>Q5XTP2_DANRE (175 residues) MHGKVIFYEDRKFQGRSYECMSDCADMSSYLSRCHSCRIESGCFMMYDRPNYMGNQYFFR KGDYADYMSMFGMNDCIRSCRMIPMHRGSYRLKIYERENFGGQMYELMDDCDNIMDRYRM SHCQSCHVMDGHWLMYEQPQYRGRMMYLRPGEYRSFREMGGTRFMSMRRIIDSMY |
Sequence |
20 40 60 80 100 120 140 160 | | | | | | | | MHGKVIFYEDRKFQGRSYECMSDCADMSSYLSRCHSCRIESGCFMMYDRPNYMGNQYFFRKGDYADYMSMFGMNDCIRSCRMIPMHRGSYRLKIYERENFGGQMYELMDDCDNIMDRYRMSHCQSCHVMDGHWLMYEQPQYRGRMMYLRPGEYRSFREMGGTRFMSMRRIIDSMY |
Prediction | CCCSSSSSSCCCCCSSSSSSCCCCCCCCCCCCCCSSSSSSCCCSSSSSCCCCCCSSSSSCCCCCCCHHHHCCCCCCSSSSCCCCCCCCCCSSSSSSCCCCCCSSSSSCCCCCCHHHCCCCCCCCSSSSCCCCSSSSSCCCCCSSSSSSCCCCCCCHHHCCCCCCSSSSSCCCCCC |
Confidence | 9974999967998122799668886744566730169994632899857999515898658867545663688881433012256778754999955999841799837897678727889741899837928997189995368997578779977728886025776033679 |
H:Helix; S:Strand; C:Coil | |
Sequence |
20 40 60 80 100 120 140 160 | | | | | | | | MHGKVIFYEDRKFQGRSYECMSDCADMSSYLSRCHSCRIESGCFMMYDRPNYMGNQYFFRKGDYADYMSMFGMNDCIRSCRMIPMHRGSYRLKIYERENFGGQMYELMDDCDNIMDRYRMSHCQSCHVMDGHWLMYEQPQYRGRMMYLRPGEYRSFREMGGTRFMSMRRIIDSMY |
Prediction | 7522010003660402322044314404631530200303633000013261402101044141332441243321012221233444523020113661533322024312103433335302002035420000123604021000342514325514243010013036548 |
Values range from 0 (buried residue) to 8 (highly exposed residue) | |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | 20 40 60 80 100 120 140 160 | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SS Seq | CCCSSSSSSCCCCCSSSSSSCCCCCCCCCCCCCCSSSSSSCCCSSSSSCCCCCCSSSSSCCCCCCCHHHHCCCCCCSSSSCCCCCCCCCCSSSSSSCCCCCCSSSSSCCCCCCHHHCCCCCCCCSSSSCCCCSSSSSCCCCCSSSSSSCCCCCCCHHHCCCCCCSSSSSCCCCCC MHGKVIFYEDRKFQGRSYECMSDCADMSSYLSRCHSCRIESGCFMMYDRPNYMGNQYFFRKGDYADYMSMFGMNDCIRSCRMIPMHRGSYRLKIYERENFGGQMYELMDDCDNIMDRYRMSHCQSCHVMDGHWLMYEQPQYRGRMMYLRPGEYRSFREMGGTRFMSMRRIIDSMY | |||||||||||||||||||
1 | 1zwmA | 0.43 | 0.42 | 12.40 | 1.33 | DEthreader | TGGKISFYEDRNFQGRRYDCDCDCADFRSYLSRCNSIRVEGGTWAVYERPNFSGHMYILPQGEYPEYQRWMGLNDRLGSCRAVHLSSGQAKIQVFEKGDFNGQMYETTEDCPSIMEQFHLREIHSCKVVEGTWIFYELPNYRGRQYLLDKKEYRKPVDAASPAIQSFRRIV-E-- | |||||||||||||
2 | 1zwmA | 0.42 | 0.41 | 11.93 | 1.33 | DEthreader | TGGKISFYEDRNFQGRRYDCDCDCADFRSYLSRCNSIRVEGGTWAVYERPNFSGHMYILPQGEYPEYQRWGLND-RLGSCRAVHLSSGQAKIQVFEKGDFNGQMYETTEDCPSIMEQFHLREIHSCKVVEGTWIFYELPNYRGRQYLLDKKEYRKPVAASPA-IQSFRR-IVE-- | |||||||||||||
3 | 2jdfA | 0.52 | 0.51 | 14.87 | 3.73 | SPARKS-K | --GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGLSDSIRSCCLIPPHSGAYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRWGA-PNAKVGSLRRVMDLYL | |||||||||||||
4 | 2jdfA | 0.53 | 0.52 | 15.03 | 0.89 | CEthreader | --GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGLSDSIRSCCLIPPHSGAYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDAPNAKVGSLRRVMDLYL | |||||||||||||
5 | 2jdfA | 0.53 | 0.53 | 15.18 | 3.18 | MUSTER | --GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGLSDSIRSCCLIPPHSGAYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDWGNAKVGSLRRVMDLYL | |||||||||||||
6 | 2m3cA | 0.65 | 0.63 | 18.10 | 2.86 | HHsearch | -MGKIIFYEDRNFGGRYHECMSDCADLHSYFNRCHSIRVESGCFMVYDRTNFMGRQYFLRRGEYPDYMRTMGMNDCVRSCRMIPLHHGSFKMRLYEHSDMGGRMMELMDDCPNLMDRFNMSDFHSCHVMDGHWLVYEQPNYTGRQFYLRPGEYRSWGGV-TSRMGSIRRITDL-- | |||||||||||||
7 | 2m3cA | 0.66 | 0.65 | 18.41 | 2.39 | FFAS-3D | -MGKIIFYEDRNFGGRYHECMSDCADLHSYFNRCHSIRVESGCFMVYDRTNFMGRQYFLRRGEYPDYMRTMGMNDCVRSCRMIPLHHGSFKMRLYEHSDMGGRMMELMDDCPNLMDRFNMSDFHSCHVMDGHWLVYEQPNYTGRQFYLRPGEYRSYNDWGGSRMGSIRRITD--- | |||||||||||||
8 | 2v2uA | 0.51 | 0.50 | 14.55 | 3.72 | CNFpred | --GKITFFEDRSFQGRCYECSSDCPNLQTYFSRCNSVRVDSGCWMLYERPNYQGHQYFLRRGEYPDYQQWMGFSDSIRSCRLIPH-AGSHRMRLYEKEDHKGVMMELSEDCSCIQDRFHLSEVRSLQVLEGCWVLYEMPNYRGRQYLLRPQEYRRFQDWGSAKAGSLRRVVDLY- | |||||||||||||
9 | 2jdfA | 0.51 | 0.51 | 14.72 | 1.17 | DEthreader | --GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGLSDSIRSCCLIPPHSGAYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDGAPNAKVGSLRRVMDLY | |||||||||||||
10 | 2m3cA | 0.65 | 0.63 | 18.11 | 1.17 | DEthreader | M-GKIIFYEDRNFGGRYHECMSDCADLHSYFNRCHSIRVESGCFMVYDRTNFMGRQYFLRRGEYPDYMRTMGMNDCVRSCRMIPLHHGSFKMRLYEHSDMGGRMMELMDDCPNLMDRFNMSDFHSCHVMDGHWLVYEQPNYTGRQFYLRPGEYRSYNDGVTSRMGSIRR-ITDL- | |||||||||||||
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References: | |
1. | Wei Zheng, Qiqige Wuyun, Yang Li, Quancheng Liu, Xiaogen Zhou, Yiheng Zhu, P. Lydia Freddolino, Yang Zhang. Integrating deep learning potentials with I-TASSER for single- and multi-domain protein structure prediction. Submitted. 2023. |