>CRGM1_CHIID (175 residues) MGKIIFYEDRNFQGRSYECMSDCSDITTYMSRCQSCRVESGCFMVYERPNFMGMQFFLRR GEYHDMQRMMSMGMMFDSIRSCRYPYRAFRMRIYEREYFGGQMSELMGDCDSIMDRFRMS DCMYCHVMDGHWLMYEQAHYRGKMMYLRPGEYRSFRDMGMSGMRFMSMRRITDMC |
Sequence |
20 40 60 80 100 120 140 160 | | | | | | | | MGKIIFYEDRNFQGRSYECMSDCSDITTYMSRCQSCRVESGCFMVYERPNFMGMQFFLRRGEYHDMQRMMSMGMMFDSIRSCRYPYRAFRMRIYEREYFGGQMSELMGDCDSIMDRFRMSDCMYCHVMDGHWLMYEQAHYRGKMMYLRPGEYRSFRDMGMSGMRFMSMRRITDMC |
Prediction | CCSSSSSSCCCCCCSSSSSCCCCCCCCCCCCCCSSSSSSCCCSSSSSCCCCCCSSSSSCCCCCCCHHHHCCCCCCCCCSSSSCCCCCCCSSSSSSCCCCCCSSSSSCCCCCCHHHHCCCCCCSSSSSCCCCSSSSSCCCCCSSSSSSCCCCCCCHHHHCCCCCCSSSSSSCCCCC |
Confidence | 9869998079981018995688876434457411699947518998379981048997698686767734899876515772068986479999469998507998278876688448788418998148189981899942589974776799788378999145687633489 |
H:Helix; S:Strand; C:Coil | |
Sequence |
20 40 60 80 100 120 140 160 | | | | | | | | MGKIIFYEDRNFQGRSYECMSDCSDITTYMSRCQSCRVESGCFMVYERPNFMGMQFFLRRGEYHDMQRMMSMGMMFDSIRSCRYPYRAFRMRIYEREYFGGQMSELMGDCDSIMDRFRMSDCMYCHVMDGHWLMYEQAHYRGKMMYLRPGEYRSFRDMGMSGMRFMSMRRITDMC |
Prediction | 7420000036604123220343134035214301003036320000122614021110440313324412434430200110334454220101237515343231343122036323344020020343200001236041221103325153244132533301002313758 |
Values range from 0 (buried residue) to 8 (highly exposed residue) | |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | 20 40 60 80 100 120 140 160 | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SS Seq | CCSSSSSSCCCCCCSSSSSCCCCCCCCCCCCCCSSSSSSCCCSSSSSCCCCCCSSSSSCCCCCCCHHHHCCCCCCCCCSSSSCCCCCCCSSSSSSCCCCCCSSSSSCCCCCCHHHHCCCCCCSSSSSCCCCSSSSSCCCCCSSSSSSCCCCCCCHHHHCCCCCCSSSSSSCCCCC MGKIIFYEDRNFQGRSYECMSDCSDITTYMSRCQSCRVESGCFMVYERPNFMGMQFFLRRGEYHDMQRMMSMGMMFDSIRSCRYPYRAFRMRIYEREYFGGQMSELMGDCDSIMDRFRMSDCMYCHVMDGHWLMYEQAHYRGKMMYLRPGEYRSFRDMGMSGMRFMSMRRITDMC | |||||||||||||||||||
1 | 1ytqA | 0.25 | 0.17 | 5.14 | 0.83 | DEthreader | NPKIIIFEQENFQGHSHELNGPCPNLKETVEKAGSVLVQAGPWVGYEQANCKGEQFVFEKGEYPRWDSWTS-SRRTDSLSSLRPIKVDSQEHK---------------EIIDDDVRVTWVLLEK------------SVRR----R--------DMQW------------------ | |||||||||||||
2 | 5hp5A | 0.06 | 0.05 | 2.05 | 0.83 | DEthreader | --VQLS--------LKMPTHAAHVDIHSDVANSFRVSGSSGVEVFMVY-NRTRVKEPI----GKARW-------PLDTDADMVVSVTDISLEVDT-----TGKVKRSQGDKKTWRYGAILLMSPMLLSCNKLVLNVPF-SDSLSYEVRQEIKFYVE---GLTGLVSLSVSLVDL- | |||||||||||||
3 | 2jdfA | 0.54 | 0.53 | 15.17 | 3.85 | SPARKS-K | -GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGL---SDSIRSCCLIPPHYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDWGAPNAKVGSLRRVMDLY | |||||||||||||
4 | 3qk3A | 0.30 | 0.29 | 8.85 | 0.90 | CEthreader | SYKVILYELENFQGKRCELSAECPSLT-LLEKVGSIQVESGPWLAFESRAFRGEQFVLEKGDYPRWDAWSNS-RDSDSLLSLRPLSPHHKLHLFENPAFSGRKMEIVDDVPSLWAHGFQDRVASVRAINGTWVGYEFPGYRGRQYVFERGEYRHWNEWDASQPQLQSVRRIRD-- | |||||||||||||
5 | 2jdfA | 0.51 | 0.50 | 14.57 | 3.31 | MUSTER | -GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGLSDSIRSCCLIPPHSGAYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDWGAPNAKVGSLRRVMDLY | |||||||||||||
6 | 2m3cA | 0.64 | 0.63 | 17.95 | 2.88 | HHsearch | MGKIIFYEDRNFGGRYHECMSDCADLHSYFNRCHSIRVESGCFMVYDRTNFMGRQYFLRRGEYPDYMRTMGM---NDCVRSCRMPLGSFKMRLYEHSDMGGRMMELMDDCPNLMDRFNMSDFHSCHVMDGHWLVYEQPNYTGRQFYLRPGEYRSYNDWGGVTSRMGSIRRITDL- | |||||||||||||
7 | 2m3cA | 0.61 | 0.61 | 17.35 | 2.52 | FFAS-3D | MGKIIFYEDRNFGGRYHECMSDCADLHSYFNRCHSIRVESGCFMVYDRTNFMGRQYFLRRGEYPDYMRTMGMNDCVRSCRMIPLHHGSFKMRLYEHSDMGGRMMELMDDCPNLMDRFNMSDFHSCHVMDGHWLVYEQPNYTGRQFYLRPGEYRSYNDWGGVTSRMGSIRRITDL- | |||||||||||||
8 | 2v2uA | 0.54 | 0.52 | 15.01 | 3.92 | CNFpred | -GKITFFEDRSFQGRCYECSSDCPNLQTYFSRCNSVRVDSGCWMLYERPNYQGHQYFLRRGEYPDYQQWMGF---SDSIRSCRLI-GSHRMRLYEKEDHKGVMMELSEDCSCIQDRFHLSEVRSLQVLEGCWVLYEMPNYRGRQYLLRPQEYRRFQDWGSVDAKAGSLRRVVDLY | |||||||||||||
9 | 1blbC | 0.26 | 0.17 | 5.10 | 0.83 | DEthreader | NPKIIIFEQENFQGHSHELNGPCPNLKEGVEKAGSVLVQAGPWVGYEQANCKGEQFVFEKGEYPRWDSWTSSRRT-DSLSSLRPIKVDSQEH----------------IDDDGWVGLLE-----------------VRR-----R--------DMQW------------------ | |||||||||||||
10 | 7k66A | 0.05 | 0.04 | 1.91 | 0.83 | DEthreader | HIQITASGQ-------APKLARLYSINAWSTKESWIKVDLMIIKTQGARSSGIKHNIFIYIRL-HPT--H---YSIRSTLRMELMGCSMPLGMQITAS---PSKAR---L-HLQG-SNAWRPWLQVKVTGVTTQGVKSLTSMYVKEFLISSLRIH-PQSW--QIALRMEV----- | |||||||||||||
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References: | |
1. | Wei Zheng, Qiqige Wuyun, Yang Li, Quancheng Liu, Xiaogen Zhou, Yiheng Zhu, P. Lydia Freddolino, Yang Zhang. Integrating deep learning potentials with I-TASSER for single- and multi-domain protein structure prediction. Submitted. 2023. |