>Q5XTN2_DANRE (176 residues) MATESIVFYEDRNFQGRSYECKGDTSDLHSFFSRCNSARVKGGFWVLYERPNYMGYQYIL GPGEYPDYQHWIGFNDCVRSCRLVRHVIGDLKLKLFERPNFDGQTWEVTESTPSIQERFL CREINSCKVHEAPCVFFEHANYRGRQYFLEKGEYRRHTEWGAMHPTVGSIRQITTD |
Sequence |
20 40 60 80 100 120 140 160 | | | | | | | | MATESIVFYEDRNFQGRSYECKGDTSDLHSFFSRCNSARVKGGFWVLYERPNYMGYQYILGPGEYPDYQHWIGFNDCVRSCRLVRHVIGDLKLKLFERPNFDGQTWEVTESTPSIQERFLCREINSCKVHEAPCVFFEHANYRGRQYFLEKGEYRRHTEWGAMHPTVGSIRQITTD |
Prediction | CCCCSSSSSSCCCCCSSSSSSCCCCCCCCCCCCCSSSSSSSCCCSSSSSCCCCCCSSSSSCCCCCCCHHHHCCCCCCCSSSSSSCCCCCCCSSSSSSCCCCCCCSSSSCCCCCCHHHCCCCCCCSSSSSCCCCSSSSSCCCCCSSSSSSCCCCCCCHHHHCCCCCCSSSSSSSCCC |
Confidence | 99983999967998133799667865432455703179992631899967998224898679757666774588986055577147898866999956898852699826887577728888521899807938998479992368996587569967717889942327884169 |
H:Helix; S:Strand; C:Coil | |
Sequence |
20 40 60 80 100 120 140 160 | | | | | | | | MATESIVFYEDRNFQGRSYECKGDTSDLHSFFSRCNSARVKGGFWVLYERPNYMGYQYILGPGEYPDYQHWIGFNDCVRSCRLVRHVIGDLKLKLFERPNFDGQTWEVTESTPSIQERFLCREINSCKVHEAPCVFFEHANYRGRQYFLEKGEYRRHTEWGAMHPTVGSIRQITTD |
Prediction | 84532000003660412321043304404531530100203513000012271412111044241432441243422010021134434523010123662634324034313202544235402002036220000223613021110443614324312243330100332368 |
Values range from 0 (buried residue) to 8 (highly exposed residue) | |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | 20 40 60 80 100 120 140 160 | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SS Seq | CCCCSSSSSSCCCCCSSSSSSCCCCCCCCCCCCCSSSSSSSCCCSSSSSCCCCCCSSSSSCCCCCCCHHHHCCCCCCCSSSSSSCCCCCCCSSSSSSCCCCCCCSSSSCCCCCCHHHCCCCCCCSSSSSCCCCSSSSSCCCCCSSSSSSCCCCCCCHHHHCCCCCCSSSSSSSCCC MATESIVFYEDRNFQGRSYECKGDTSDLHSFFSRCNSARVKGGFWVLYERPNYMGYQYILGPGEYPDYQHWIGFNDCVRSCRLVRHVIGDLKLKLFERPNFDGQTWEVTESTPSIQERFLCREINSCKVHEAPCVFFEHANYRGRQYFLEKGEYRRHTEWGAMHPTVGSIRQITTD | |||||||||||||||||||
1 | 1zwmA | 0.52 | 0.52 | 14.95 | 1.33 | DEthreader | KTGGKISFYEDRNFQGRRYDCDCDCADFRSLSR-CNSIRVEGGTWAVYERPNFSGHMYILPQGEYPEYQRWMGLNDRLGSCRAVHLSSGQAKIQVFEKGDFNGQMYETTEDCPSIMEQFHLREIHSCKVVEGTWIFYELPNYRGRQYLLDKKEYRKPVDWGAASPAIQSFRRIV-E | |||||||||||||
2 | 1zwmA | 0.53 | 0.53 | 15.26 | 1.33 | DEthreader | KTGGKISFYEDRNFQGRRYDCDCDCADFRSYLSRCNSIRVEGGTWAVYERPNFSGHMYILPQGEYPEYQRWMGLNDRLGSCRAVHLSSGQAKIQVFEKGDFNGQMYETTEDCPSIMEQFHLREIHSCKVVEGTWIFYELPNYRGRQYLLDKKEYRKPVDWGAASPAIQSFRRI-VE | |||||||||||||
3 | 2jdfA | 0.50 | 0.49 | 14.33 | 3.95 | SPARKS-K | ---GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGLSDSIRSCCLIPPHSGAYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDWGAPNAKVGSLRRVMDL | |||||||||||||
4 | 1blbC | 0.34 | 0.34 | 10.05 | 0.90 | CEthreader | PLNPKIIIFEQENFQGHSHELNGPCPNLKETVEKAGSVLVQAGPWVGYEQANCKGEQFVFEKGEYPRWDSWTSSTDSLSSLRPIKVDSQEHKITLYENPNFTGKKMEVIDDVPSFHAHGYQEKVSSVRVQSGTWVGYQYPGYRGLQYLLEKGDYKDSGDFGAPQPQVQSVRRIRDM | |||||||||||||
5 | 2jdfA | 0.50 | 0.49 | 14.33 | 3.12 | MUSTER | ---GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGLSDSIRSCCLIPPHSGAYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDWGAPNAKVGSLRRVMDL | |||||||||||||
6 | 2m3cA | 0.45 | 0.44 | 12.95 | 2.84 | HHsearch | --MGKIIFYEDRNFGGRYHECMSDCADLHSYFNRCHSIRVESGCFMVYDRTNFMGRQYFLRRGEYPDYMRTMGMNDCVRSCRMIPLHHGSFKMRLYEHSDMGGRMMELMDDCPNLMDRFNMSDFHSCHVMDGHWLVYEQPNYTGRQFYLRPGEYRSYNDWGGVTSRMGSIRRITDL | |||||||||||||
7 | 1zwmA | 0.53 | 0.53 | 15.26 | 2.41 | FFAS-3D | -TGGKISFYEDRNFQGRRYDCDCDCADFRSYLSRCNSIRVEGGTWAVYERPNFSGHMYILPQGEYPEYQRWMGLNDRLGSCRAVLSSGGQAKIQVFEKGDFNGQMYETTEDCPSIMEQFHLREIHSCKVVEGTWIFYELPNYRGRQYLLDKKEYRKPVDWGAASPAIQSFRRIVE- | |||||||||||||
8 | 5vh1A | 0.52 | 0.52 | 14.95 | 4.00 | CNFpred | RAGPKVTFYEDKNFLGRRYECDADCPDFHTYLNRCNSIRVEGGTWVAYERPNYSGNMYVLRRGEYPDYHHWMGLNDRLGSCKAVHIPGAQGHIQVFEKGDFGGQMFEATEDCPSILEECHFREVHACRVLEGIWVFYEHPNYRGRQYLLPKGEYRQPVEWGAVTPAVQSFRSIAE- | |||||||||||||
9 | 2jdfA | 0.46 | 0.44 | 12.93 | 1.17 | DEthreader | ---GKITFYEDRAFQGRSYECTTDCPNLQPFSR-CNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGLSDSIRSCCLIPPHSGAYRMKIYDRDELRGQMSELTDDCLSVQDFHLTE-IHSLNVLEGSWILYEMPYRGR-QYLLRPGEYRRFLDWGAPNAKVGSLRRVMDL | |||||||||||||
10 | 2jdfA | 0.44 | 0.43 | 12.48 | 1.17 | DEthreader | ---GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNQGHQYFLRR-G-EYPDYQQWGLSDSIRSCCLIPPHSGAYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDWGAPNAKVGSLRRVMDY | |||||||||||||
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Top 10 structural analogs in PDB (as identified by
TM-align)
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Top 5 enzyme homologs in PDB
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Template proteins with similar binding site:
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References: | |
1. | Wei Zheng, Qiqige Wuyun, Yang Li, Quancheng Liu, Xiaogen Zhou, Yiheng Zhu, P. Lydia Freddolino, Yang Zhang. Integrating deep learning potentials with I-TASSER for single- and multi-domain protein structure prediction. Submitted. 2023. |