>A0A9J7MQ49_BRAFL (233 residues) MGSGSSTPRPKETKAKTKSKSFRFHYFDLKGRGEVVRLAFVLAGLDFDDVRHTLEEWTNM KQTGEFTGPFNQLPWLELDDGTTISQTRAILRLIAREGGFDGDTNVEAAKADEITDAVED IKDDFFKTIFEKDDEKRASLEAEFWDNKLPTRLRQLEVLLEANNGGQGFFVGKAMTHADL DMFSLLDMLESSSKERDLLGMLGAVPLVKAHKERVATNTKIAEYLQTRKDTPL |
Sequence |
20 40 60 80 100 120 140 160 180 200 220 | | | | | | | | | | | MGSGSSTPRPKETKAKTKSKSFRFHYFDLKGRGEVVRLAFVLAGLDFDDVRHTLEEWTNMKQTGEFTGPFNQLPWLELDDGTTISQTRAILRLIAREGGFDGDTNVEAAKADEITDAVEDIKDDFFKTIFEKDDEKRASLEAEFWDNKLPTRLRQLEVLLEANNGGQGFFVGKAMTHADLDMFSLLDMLESSSKERDLLGMLGAVPLVKAHKERVATNTKIAEYLQTRKDTPL |
Prediction | CCCCCCCCCCCCCCCCCCCCCSSSSSCCCCCCHHHHHHHHHHHCCCCSSSSSCHHHHHHHHHHCCCCCCCCCCCSSSSCCCSSSSHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCSSSCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHCHHHHHHHHCCCCCCC |
Confidence | 99988999852135668999728987389842599999999959997699728888887555301259877787699769959860899999997622799989999999999999999999999999836888899999999999999999999999999828999826289645589999999999998564322133442194589999999919889999970899999 |
H:Helix; S:Strand; C:Coil | |
Sequence |
20 40 60 80 100 120 140 160 180 200 220 | | | | | | | | | | | MGSGSSTPRPKETKAKTKSKSFRFHYFDLKGRGEVVRLAFVLAGLDFDDVRHTLEEWTNMKQTGEFTGPFNQLPWLELDDGTTISQTRAILRLIAREGGFDGDTNVEAAKADEITDAVEDIKDDFFKTIFEKDDEKRASLEAEFWDNKLPTRLRQLEVLLEANNGGQGFFVGKAMTHADLDMFSLLDMLESSSKERDLLGMLGAVPLVKAHKERVATNTKIAEYLQTRKDTPL |
Prediction | 76364543545554456633402011130401000000002127161433314374045134323342222200002066433010020001000543443252430201010002102301320031013434542462245214520350053015104635554300002300000000000021033123444244105614444412510461550251166357478 |
Values range from 0 (buried residue) to 8 (highly exposed residue) | |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | 20 40 60 80 100 120 140 160 180 200 220 | | | | | | | | | | | | |||||||||||||
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SS Seq | CCCCCCCCCCCCCCCCCCCCCSSSSSCCCCCCHHHHHHHHHHHCCCCSSSSSCHHHHHHHHHHCCCCCCCCCCCSSSSCCCSSSSHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCSSSCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHCHHHHHHHHCCCCCCC MGSGSSTPRPKETKAKTKSKSFRFHYFDLKGRGEVVRLAFVLAGLDFDDVRHTLEEWTNMKQTGEFTGPFNQLPWLELDDGTTISQTRAILRLIAREGGFDGDTNVEAAKADEITDAVEDIKDDFFKTIFEKDDEKRASLEAEFWDNKLPTRLRQLEVLLEANNGGQGFFVGKAMTHADLDMFSLLDMLESSSKERDLLGMLGAVPLVKAHKERVATNTKIAEYLQTRKDTPL | |||||||||||||||||||
1 | 2on7A | 0.27 | 0.24 | 7.24 | 1.00 | DEthreader | ------------------MVHYKLTYFAIRGAGECARQIFALADQEFEDVRLDKEQF-AK--VKPD-LPFGQVPVLEVD-GKQLAQSLAICRYLARQFGFAGKSTFDEAVVDSLADQYSDYRVEIKSFFYTREGD-VEQLKKEVLLPARDKFFGFITKFLKKSP--SGFLVGDSLTWVDLLVSEHNATMLTF--VP---EFLEGYPEVKEHMEKIRAIPKLKKWIETRPETLF | |||||||||||||
2 | 1g6wD | 0.13 | 0.12 | 4.16 | 1.33 | DEthreader | -------SRITKFFQEQPLEGYTLFSHRSAPNGFKVAIVLSELGFHYNTIFLDFLGEHRA-PEFVSVNPNARVPALIDHDNLSIWESGAILLHLVNYYLLWSDDLADQSQINAWLFFQTGHAPMIGQALHFFHSQKIASAVERYTD-EVRRVYGVVEMALAERRLYPVWLVGDKLTIADLAFVPWNNVVD-RI---GIN-IKIEFPEVYKWTKHMMRRPAVIKALRGE----- | |||||||||||||
3 | 4q5nA | 0.20 | 0.18 | 5.63 | 1.33 | DEthreader | --------------------PLKIGYWDVRGFAEPIRMLLKHLNIEFEETRYGRDEWLAEKF-TLG-LEFPNLPYLFDG-DFKMTESVAILKRLARANGMIATTEPALSYSEMIEAMIIDIRNRLINVVYAETPEEFEQKLADLRE-RLETSLGQLEAFFQKHGS--QWVAGDKLTYVDFLAYEYLDWYRVFV--K-STPIFEKFAKVSDYMKRFEELPSLKEYIREHRSASH | |||||||||||||
4 | 3vpqA | 0.29 | 0.25 | 7.59 | 1.82 | SPARKS-K | -------------------PNVKFYYFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFKPKT----PFGQMPVLEIDG-KQYAQSTAICRYLGRKYGLAGANDEEAFEIDQNVEFLNDIRASAASVHYEKDEAVKAKKKAELEETKYPFFFEKLNEILTKNN---GHIALGKLTWGDFVYAGMYDYLKAMLQ---KPDLEQKYPAFRKPIEAVLAIPKVKAYVDAAPRTEL | |||||||||||||
5 | 1m0uA | 0.25 | 0.22 | 6.78 | 0.33 | CEthreader | ------------------KHSYTLFYFNVKALAEPLRYLFAYGNQEYEDVRVTRDEWPALKP----TMPMGQMPVLEVDG-KRVHQSISMARFLAKTVGLCGATPWEDLQIDIVVDTINDFRLKIAVVSYEPEDEIKEKKLVTLNAEVIPFYLEKLEQTVKDN---DGHLALGKLTWADVYFAGITDYMNYMVKR----DLLEPYPALRGVVDAVNALEPIKAWIEKRPVTEV | |||||||||||||
6 | 1m0uA | 0.25 | 0.22 | 6.78 | 1.54 | MUSTER | ------------------KHSYTLFYFNVKALAEPLRYLFAYGNQEYEDVRVTRDEWPALKPT----MPMGQMPVLEVDG-KRVHQSISMARFLAKTVGLCGATPWEDLQIDIVVDTINDFRLKIAVVSYEPEDEIKEKKLVTLNAEVIPFYLEKLEQTVKDN---DGHLALGKLTWADVYFAGITDYMNYMVKR----DLLEPYPALRGVVDAVNALEPIKAWIEKRPVTEV | |||||||||||||
7 | 1m0uA | 0.25 | 0.21 | 6.66 | 0.99 | HHsearch | ------------------KHSYTLFYFNVKALAEPLRYLFAYGNQEYEDVRVTRDEWPALK----PTMPMGQMPVLEVDGK-RVHQSISMARFLAKTVGLCGATPWEDLQIDIVVDTINDFRLKIAVVSYEPEDEIKEKKLVTLNAEVIPFYLEKLEQTVKDN-D--GHLALGKLTWADVYFAGITDYMNY----MKR-DLLEPYPALRGVVDAVNALEPIKAWIEKRPVTEV | |||||||||||||
8 | 2hnlA | 0.26 | 0.23 | 7.01 | 2.80 | FFAS-3D | -----------------QMEKYTLTYFNGRGRAEVIRLLFALANVSYEDNRITRDEWKY----LKPRTPFGHVPMLN-VSGNVLGESHAIELLLGGRFGLLGTNDWEEAKIMAVVLNIDELFQKLIPWTHEKNTTKKAELFRNLSESDVMPFLGRYEKFLK--ESTTGHIVGNKVSVADLTVFNMLMTLDDEVK-------LEEYPQLASFVNKIGQMPGIKEWIKKRPKTYF | |||||||||||||
9 | 4q5rA | 0.26 | 0.22 | 6.89 | 1.54 | CNFpred | -------------------PSYKLTYCPVKALGEPIRFLLSYGEKDFEDYRFQEGDWPNLK----PSMPFGKTPVLEIDG-KQTHQSVAISRYLGKQFGLSGKDDWENLEIDMIVDTISDFRAAIANYHYDADENSKQKKWDPLKKETIPYYTKKFDEVVKAN---GGYLAAGKLTWADFYFVAILDYLNHMAKED----LVANQPNLKALREKVLGLPAIKAWVAKRPPTDL | |||||||||||||
10 | 1tw9F | 0.29 | 0.25 | 7.59 | 1.00 | DEthreader | ------------------MVHYKLTYFNGRGAGECARQVFALADQKYEDVRLTQETF-VP--LKAT-FPFGQVPVLEVD-GQQLAQSQAICRYLAKTFGFAGATPFESALIDSLADAYTDYRAEMKTYYYTFMGD-VDKPKTDVLLPARTKFLGFITKFLKKNS--SGFLVGDKISWVDLLVAEHVADMTNR--VP---EYIEGFPEVKAHMERIQQTPRIKKWIETRPETPF | |||||||||||||
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Top 10 structural analogs in PDB (as identified by
TM-align)
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Top 5 enzyme homologs in PDB
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Template proteins with similar binding site:
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References: | |
1. | Wei Zheng, Qiqige Wuyun, Yang Li, Quancheng Liu, Xiaogen Zhou, Yiheng Zhu, P. Lydia Freddolino, Yang Zhang. Integrating deep learning potentials with I-TASSER for single- and multi-domain protein structure prediction. Submitted. 2023. |