>S4REP4_PETMA (158 residues) DYKGRRFESSQDCMNLASNLSRCNSIRVEGGAWVIYERPDHKGNMYIMEPGEYPEYQRWM GYNDHIGSCRNIRGVSIPTCGQCTGGGEEEGAERKHQVDDCSHLHDRFSMREVHSVRVHD GAWVAYEEPHYRGRQYLLEKGDYRKCSEYGAMSPTMQS |
Sequence |
20 40 60 80 100 120 140 | | | | | | | DYKGRRFESSQDCMNLASNLSRCNSIRVEGGAWVIYERPDHKGNMYIMEPGEYPEYQRWMGYNDHIGSCRNIRGVSIPTCGQCTGGGEEEGAERKHQVDDCSHLHDRFSMREVHSVRVHDGAWVAYEEPHYRGRQYLLEKGDYRKCSEYGAMSPTMQS |
Prediction | CCCCCSSSSCCCCCCCCCCCCCCCSSSSSSCCSSSSSCCCCCCSSSSSCCCCCCCHHHCCCCCCCCSSSSSSCCCCCCCCSSSSSSCCCCCCCSSSSCCCCCCHHHHCCCCCCCSSSSCCCCSSSSSCCCCCSSSSSSCCCCCCCHHHHCCCCCCCCC |
Confidence | 99873898478887511322440159997312899937999631787668768883551688874124576426778862589982268888268961678756771688874179983681999837999405788747767996771789985469 |
H:Helix; S:Strand; C:Coil | |
Sequence |
20 40 60 80 100 120 140 | | | | | | | DYKGRRFESSQDCMNLASNLSRCNSIRVEGGAWVIYERPDHKGNMYIMEPGEYPEYQRWMGYNDHIGSCRNIRGVSIPTCGQCTGGGEEEGAERKHQVDDCSHLHDRFSMREVHSVRVHDGAWVAYEEPHYRGRQYLLEKGDYRKCSEYGAMSPTMQS |
Prediction | 83643423044314403631530200203411000013271422111044141332541233432010021034443643223024464443333323431320363243530100203413000113261412212044351532441226344348 |
Values range from 0 (buried residue) to 8 (highly exposed residue) | |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | 20 40 60 80 100 120 140 | | | | | | | | |||||||||||||
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SS Seq | CCCCCSSSSCCCCCCCCCCCCCCCSSSSSSCCSSSSSCCCCCCSSSSSCCCCCCCHHHCCCCCCCCSSSSSSCCCCCCCCSSSSSSCCCCCCCSSSSCCCCCCHHHHCCCCCCCSSSSCCCCSSSSSCCCCCSSSSSSCCCCCCCHHHHCCCCCCCCC DYKGRRFESSQDCMNLASNLSRCNSIRVEGGAWVIYERPDHKGNMYIMEPGEYPEYQRWMGYNDHIGSCRNIRGVSIPTCGQCTGGGEEEGAERKHQVDDCSHLHDRFSMREVHSVRVHDGAWVAYEEPHYRGRQYLLEKGDYRKCSEYGAMSPTMQS | |||||||||||||||||||
1 | 1zwmA | 0.35 | 0.33 | 9.82 | 1.00 | DEthreader | NFQGRRYDCDCDCADFRSYLSRCNSIRVEGGTWAVYERPNFSGHMYILPQGEYPEYQRWMGLNDRLGSCRAVHLSSGGQAKIQVFGDFNGQMYETTEDCPS--IMEQLREIHSCKVVE--GTWIFY-ELGRQ--YLLD--K-KEYRKPVDWGASPAIF | |||||||||||||
2 | 1zwmA | 0.45 | 0.44 | 12.75 | 1.17 | DEthreader | NFQRRYDCDCD-CADFRSYLSRCNSIRVEGGTWAVYERPFSGH-MYILPQGEYPEYQRWMGLNDRLGSCRAVHLSSGQAKIQVFEKGDFNGQMYETTED-CPSIMEQFHLREIHSCKVVEGTWIFYELPNRGR-QYLLDKKEYRKPVDWGAASPAI-- | |||||||||||||
3 | 2jdfA | 0.45 | 0.44 | 12.96 | 4.03 | SPARKS-K | AFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGLSDSIRSCCLIPPHSGAYRMKIYDRD-ELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDWGAPNAKVGS | |||||||||||||
4 | 2jdfA | 0.45 | 0.44 | 12.96 | 0.92 | CEthreader | AFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGLSDSIRSCCLIPPHSGAYRMKIY-DRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDWGAPNAKVGS | |||||||||||||
5 | 2jdfA | 0.45 | 0.44 | 12.96 | 3.12 | MUSTER | AFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGLSDSIRSCCLIPPHSGAY-RMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDWGAPNAKVGS | |||||||||||||
6 | 1zwmA | 0.48 | 0.48 | 13.98 | 2.79 | HHsearch | NFQGRRYDCDCDCADFRSYLSRCNSIRVEGGTWAVYERPNFSGHMYILPQGEYPEYQRWMGLNDRLGSCRAVHLSGGQAKIQV-FEKGDFNGQMYETTEDCPSIMEQFHLREIHSCKVVEGTWIFYELPNYRGRQYLLDKKEYRKPVDWGAASPAIQS | |||||||||||||
7 | 2jdfA | 0.45 | 0.44 | 12.96 | 2.13 | FFAS-3D | AFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGLSDSIRSCCLIPPHSGAY-RMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDWGAPNAKVGS | |||||||||||||
8 | 2jdgA | 0.43 | 0.42 | 12.44 | 3.79 | CNFpred | AFQGRIYGCTTDCPNLQPYFSRCNSIVVQSGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGLSDSIRSCCLIPPHSGAYRMKIYD-RDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDWGAPNAKVGS | |||||||||||||
9 | 3lwkA | 0.21 | 0.19 | 6.04 | 1.00 | DEthreader | GFQGRRHEFTAECPSVLEGFETVRSLKVLSGAWVGFEHAGFQGQQYILERGEYPSWDAWGGAE-RLTSFRPAACANHRSRLTIFEENFL-GKKGELDYPSL----WEGNEV-GSFHVHS-GAWVCSQ--GFQ--YVLECDH-SGDYKHFREWPTFQVI | |||||||||||||
10 | 2jdfA | 0.21 | 0.20 | 6.25 | 1.00 | DEthreader | AFQGRSYECTDCPNLQPYFSRCNSIRVES-GCWMIY-ERPQGH-QYFLR-RGEYPDYQQWMGLSDSIRSCCLIPPHSAYRMKIYDRDELR-GQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNRGR-QYLLRPGEYRRFL-DWGAPNAKV- | |||||||||||||
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Top 10 structural analogs in PDB (as identified by
TM-align)
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Top 5 enzyme homologs in PDB
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Template proteins with similar binding site:
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References: | |
1. | Wei Zheng, Qiqige Wuyun, Yang Li, Quancheng Liu, Xiaogen Zhou, Yiheng Zhu, P. Lydia Freddolino, Yang Zhang. Integrating deep learning potentials with I-TASSER for single- and multi-domain protein structure prediction. Submitted. 2023. |