>Q5XJ63_DANRE (177 residues) MGKIIFYEDRNFQGRNFESSGDCPELTAYLSRCCSCRVESGCFMVYEHSNFIGHQMLVRR GDYHDNKRIMGMSTSDCIKSCKMIPMHKGTFRMRIFEKENFVGQKYELMDDCESIQERFY MSDCQSCNVTHGHWLLYERPNFEGRMIYIRPGEYSTFSDMGLGSLKIASVRRIMESC |
Sequence |
20 40 60 80 100 120 140 160 | | | | | | | | MGKIIFYEDRNFQGRNFESSGDCPELTAYLSRCCSCRVESGCFMVYEHSNFIGHQMLVRRGDYHDNKRIMGMSTSDCIKSCKMIPMHKGTFRMRIFEKENFVGQKYELMDDCESIQERFYMSDCQSCNVTHGHWLLYERPNFEGRMIYIRPGEYSTFSDMGLGSLKIASVRRIMESC |
Prediction | CCSSSSSSCCCCCSSSSSSCCCCCCCCCCCCCSSSSSSSCCCSSSSSCCCCCCSSSSSCCCCCCCHHHHCCCCCCCSSSSCCCCCCCCCCCSSSSSSCCCCCCSSSSSCCCCCCHHHHCCCCCCCSSSSSCCCSSSSSCCCCCCSSSSSCCCCCCCHHHHCCCCCCSSSSSSCCCCC |
Confidence | 976999957998221799557842122556731279994742899847998444887679767775774368888822111455788887559999569997407998467865787267787427998238289981899960589975886699788379998256677645689 |
H:Helix; S:Strand; C:Coil | |
Sequence |
20 40 60 80 100 120 140 160 | | | | | | | | MGKIIFYEDRNFQGRNFESSGDCPELTAYLSRCCSCRVESGCFMVYEHSNFIGHQMLVRRGDYHDNKRIMGMSTSDCIKSCKMIPMHKGTFRMRIFEKENFVGQKYELMDDCESIQERFYMSDCQSCNVTHGHWLLYERPNFEGRMIYIRPGEYSTFSDMGLGSLKIASVRRIMESC |
Prediction | 732000003660412322043304403521430100203623000003261402111044141431431243333220221322444344120100136615343231343142036313344020020353200002337141220103425143244132533301002334568 |
Values range from 0 (buried residue) to 8 (highly exposed residue) | |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | 20 40 60 80 100 120 140 160 | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SS Seq | CCSSSSSSCCCCCSSSSSSCCCCCCCCCCCCCSSSSSSSCCCSSSSSCCCCCCSSSSSCCCCCCCHHHHCCCCCCCSSSSCCCCCCCCCCCSSSSSSCCCCCCSSSSSCCCCCCHHHHCCCCCCCSSSSSCCCSSSSSCCCCCCSSSSSCCCCCCCHHHHCCCCCCSSSSSSCCCCC MGKIIFYEDRNFQGRNFESSGDCPELTAYLSRCCSCRVESGCFMVYEHSNFIGHQMLVRRGDYHDNKRIMGMSTSDCIKSCKMIPMHKGTFRMRIFEKENFVGQKYELMDDCESIQERFYMSDCQSCNVTHGHWLLYERPNFEGRMIYIRPGEYSTFSDMGLGSLKIASVRRIMESC | |||||||||||||||||||
1 | 2jdfA | 0.52 | 0.51 | 14.71 | 3.82 | SPARKS-K | -GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMG--LSDSIRSCCLIPPHSGAYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDWGAPNAKVGSLRRVMDLY | |||||||||||||
2 | 2m3cA | 0.55 | 0.54 | 15.47 | 2.88 | HHsearch | MGKIIFYEDRNFGGRYHECMSDCADLHSYFNRCHSIRVESGCFMVYDRTNFMGRQYFLRRGEYPDYMRTMGM--NDCVRSCRMIPLHHGSFKMRLYEHSDMGGRMMELMDDCPNLMDRFNMSDFHSCHVMDGHWLVYEQPNYTGRQFYLRPGEYRSYNDWGGVTSRMGSIRRITDL- | |||||||||||||
3 | 2m3cA | 0.53 | 0.53 | 15.17 | 2.46 | FFAS-3D | MGKIIFYEDRNFGGRYHECMSDCADLHSYFNRCHSIRVESGCFMVYDRTNFMGRQYFLRRGEYPDYMRTMGMNDC--VRSCRMIPLHHGSFKMRLYEHSDMGGRMMELMDDCPNLMDRFNMSDFHSCHVMDGHWLVYEQPNYTGRQFYLRPGEYRSYNDWGGVTSRMGSIRRITDL- | |||||||||||||
4 | 2v2uA | 0.50 | 0.49 | 14.25 | 3.82 | CNFpred | -GKITFFEDRSFQGRCYECSSDCPNLQTYFSRCNSVRVDSGCWMLYERPNYQGHQYFLRRGEYPDYQQWMGF--SDSIRSCRLIPHA-GSHRMRLYEKEDHKGVMMELSEDCSCIQDRFHLSEVRSLQVLEGCWVLYEMPNYRGRQYLLRPQEYRRFQDWGSVDAKAGSLRRVVDLY | |||||||||||||
5 | 7yqhE | 0.06 | 0.04 | 1.74 | 0.67 | DEthreader | ---------ELTEKHLAENCLEYDHVLLFLCQLAVIPFDIILVLFL-TSELRRKLLQY----ELLRCQFF-----------TINRLKEPGEF---------------INMILTLSNS---LQESTPL-------SSHEIWMPLLEI-PVYNGENTIVDTYIPTIKCKKSL------- | |||||||||||||
6 | 8xpcA | 0.07 | 0.05 | 1.91 | 0.67 | DEthreader | FSIAWPFPA---KGQYNGTIYHWD-LPQWADLGIWYGALWITLPSSSYPGHDELSLLSHGKAVE------------------GITLN---LNEVFP----ASDS---------------DDDKVAAQAD---QNRWYPQDMVEYFG--YYTRAVVQKGNGLLDA------RLEYTML | |||||||||||||
7 | 3qk3A | 0.32 | 0.31 | 9.37 | 3.78 | SPARKS-K | SYKVILYELENFQGKRCELSAECPSLT-LLEKVGSIQVESGPWLAFESRAFRGEQFVLEKGDYPRWDAWSNSRDSDSLLSLRPLNIDSPHHKLHLFENPAFSGRKMEIVDDVPSLWAHGFQDRVASVRAINGTWVGYEFPGYRGRQYVFERGEYRHWNEWDASQPQLQSVRRIRD-- | |||||||||||||
8 | 1blbC | 0.29 | 0.29 | 8.93 | 0.90 | CEthreader | NPKIIIFEQENFQGHSHELNGPCPNLKETVEKAGSVLVQAGPWVGYEQANCKGEQFVFEKGEYPRWDSWTSSRRTDSLSSLRPIKVDSQEHKITLYENPNFTGKKMEVIDDVPSFHAHGYQEKVSSVRVQSGTWVGYQYPGYRGLQYLLEKGDYKDSGDFGAPQPQVQSVRRIRDMQ | |||||||||||||
9 | 2jdfA | 0.52 | 0.51 | 14.71 | 2.84 | HHsearch | -GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGL--SDSIRSCCLIPPHSGAYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDWGAPNAKVGSLRRVMDLY | |||||||||||||
10 | 2jdfA | 0.51 | 0.50 | 14.55 | 2.43 | FFAS-3D | -GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWM--GLSDSIRSCCLIPPHSGAYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDWGAPNAKVGSLRRVMDL- | |||||||||||||
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References: | |
1. | Wei Zheng, Qiqige Wuyun, Yang Li, Quancheng Liu, Xiaogen Zhou, Yiheng Zhu, P. Lydia Freddolino, Yang Zhang. Integrating deep learning potentials with I-TASSER for single- and multi-domain protein structure prediction. Submitted. 2023. |