>Q5XTN7_DANRE (183 residues) MKLAKNMDRMGKIVFYEDRNFQGRSFECSLDCPELSSHFTRCNSIRVENGAWVLYERPNY MGFQYILTRGEYPDYQRWMGYNDTIRSCRMVRNHTGSFRIRLYERPDFQGQTMESSEDWP SLYDRFRQREVHSCNVLDGAWIFFEHPNYRGRQYLLEKGEYRCFTDWNAMHPTVGSIRRI QDF |
Sequence |
20 40 60 80 100 120 140 160 180 | | | | | | | | | MKLAKNMDRMGKIVFYEDRNFQGRSFECSLDCPELSSHFTRCNSIRVENGAWVLYERPNYMGFQYILTRGEYPDYQRWMGYNDTIRSCRMVRNHTGSFRIRLYERPDFQGQTMESSEDWPSLYDRFRQREVHSCNVLDGAWIFFEHPNYRGRQYLLEKGEYRCFTDWNAMHPTVGSIRRIQDF |
Prediction | CCCCCCCCCCCSSSSSSCCCCCSSSSSSCCCCCCCCCCCCSSSSSSSSCCSSSSSSCCCCCCSSSSSCCCCCCCHHHHCCCCCCCSSSSSSSCCCCCCSSSSSSCCCCCCCSSSSCCCCCCHHHHCCCCCSSSSSSCCCCSSSSSCCCCCSSSSSSCCCCCCCHHHCCCCCCCSSSSSSCCCC |
Confidence | 987689999975999957998142699678886510246703059993711899827998104898689877676774589996126667514799746999947999750699847786778837889505899827948998189981468997578569967807899824568870479 |
H:Helix; S:Strand; C:Coil | |
Sequence |
20 40 60 80 100 120 140 160 180 | | | | | | | | | MKLAKNMDRMGKIVFYEDRNFQGRSFECSLDCPELSSHFTRCNSIRVENGAWVLYERPNYMGFQYILTRGEYPDYQRWMGYNDTIRSCRMVRNHTGSFRIRLYERPDFQGQTMESSEDWPSLYDRFRQREVHSCNVLDGAWIFFEHPNYRGRQYLLEKGEYRCFTDWNAMHPTVGSIRRIQDF |
Prediction | 554355474311000003650402322142313404531430100203513000013261412112044331332441243422010021033454412010013661534323032312202433334301002036320000223713021010342515324413343330100232476 |
Values range from 0 (buried residue) to 8 (highly exposed residue) | |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | 20 40 60 80 100 120 140 160 180 | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SS Seq | CCCCCCCCCCCSSSSSSCCCCCSSSSSSCCCCCCCCCCCCSSSSSSSSCCSSSSSSCCCCCCSSSSSCCCCCCCHHHHCCCCCCCSSSSSSSCCCCCCSSSSSSCCCCCCCSSSSCCCCCCHHHHCCCCCSSSSSSCCCCSSSSSCCCCCSSSSSSCCCCCCCHHHCCCCCCCSSSSSSCCCC MKLAKNMDRMGKIVFYEDRNFQGRSFECSLDCPELSSHFTRCNSIRVENGAWVLYERPNYMGFQYILTRGEYPDYQRWMGYNDTIRSCRMVRNHTGSFRIRLYERPDFQGQTMESSEDWPSLYDRFRQREVHSCNVLDGAWIFFEHPNYRGRQYLLEKGEYRCFTDWNAMHPTVGSIRRIQDF | |||||||||||||||||||
1 | 1zwmA | 0.52 | 0.49 | 14.22 | 1.33 | DEthreader | -------KTGGKISFYEDRNFQGRRYDCDCDCADFRSYLSRCNSIRVEGGTWAVYERPFSGH-MYILPQGEYPEYQRWMGLNDRLGSCRAVHLSSGQAKIQVFEKGDFNGQMYETTEDCPSIMEQFHLREIHSCKVVEGTWIFYELPYRGR-QYLLDKKEYRKPVDWGAASPAIQSFRR-IVE | |||||||||||||
2 | 1zwmA | 0.54 | 0.52 | 14.97 | 1.33 | DEthreader | ----S--KTGGKISFYEDRNFQGRRYDCDCDCADFRSYLSRCNSIRVEGGTWAVYERPFSGH-MYILPQGEYPEYQRWMGLNDRLGSCRAVHLSSGQAKIQVFEKGDFNGQMYETTEDCPSIMEQFHLREIHSCKVVEGTWIFYELPNYRGRQYLLDKKEYRKPVDWGAASPAIQSFRR-IVE | |||||||||||||
3 | 2jdfA | 0.60 | 0.56 | 16.14 | 3.62 | SPARKS-K | ----------GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGLSDSIRSCCLIPPHSGAYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDWGAPNAKVGSLRRVMDL | |||||||||||||
4 | 2jdfA | 0.60 | 0.56 | 16.14 | 0.90 | CEthreader | ----------GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGLSDSIRSCCLIPPHSGAYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDWGAPNAKVGSLRRVMDL | |||||||||||||
5 | 2jdfA | 0.60 | 0.56 | 16.14 | 3.02 | MUSTER | ----------GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGLSDSIRSCCLIPPHSGAYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDWGAPNAKVGSLRRVMDL | |||||||||||||
6 | 2m3cA | 0.57 | 0.54 | 15.56 | 2.80 | HHsearch | ---------MGKIIFYEDRNFGGRYHECMSDCADLHSYFNRCHSIRVESGCFMVYDRTNFMGRQYFLRRGEYPDYMRTMGMNDCVRSCRMIPLHHGSFKMRLYEHSDMGGRMMELMDDCPNLMDRFNMSDFHSCHVMDGHWLVYEQPNYTGRQFYLRPGEYRSYNDWGGVTSRMGSIRRITDL | |||||||||||||
7 | 2jdfA | 0.59 | 0.56 | 15.99 | 2.41 | FFAS-3D | -----------KITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGLSDSIRSCCLIPPHSGAYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDWGAPNAKVGSLRRVMDL | |||||||||||||
8 | 2nbrA | 0.60 | 0.57 | 16.28 | 3.92 | CNFpred | ----------GKITFYEDRAFQGRSYETTTDCPNLQPYFSRCNSIRVESGCWMLYERPNYQGQQYLLRRGEYPDYQQWMGLSDSIRSCCLIPQT-VSHRLRLYEREDHKGLMMELSEDCPSIQDRFHLSEIRSLHVLEGCWVLYELPNYRGRQYLLRPQEYRRCQDWGAMDAKAGSLRRVVDL | |||||||||||||
9 | 2jdfA | 0.46 | 0.43 | 12.43 | 1.17 | DEthreader | ----------GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGLSDSIRSCCLIPPHSGAYRMKIYDRDELRGQMSELDDCLSVQDRFHLT-EIHSLNVLEGSWILY-EMPRGRQYLLRP-G-EYRRFLDWGAPNAKVGLRRVMDL | |||||||||||||
10 | 2jdfA | 0.50 | 0.46 | 13.47 | 1.17 | DEthreader | ----------GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIY-ERPQGHQYFLRR-G-EYPDYQQWGLSDSIRSCCLIPPHSGAYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDWGAPNAKVGSLRRVMDL | |||||||||||||
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References: | |
1. | Wei Zheng, Qiqige Wuyun, Yang Li, Quancheng Liu, Xiaogen Zhou, Yiheng Zhu, P. Lydia Freddolino, Yang Zhang. Integrating deep learning potentials with I-TASSER for single- and multi-domain protein structure prediction. Submitted. 2023. |