>Q5XTN4_DANRE (177 residues) MAIGKIIFFEDRNFQGRHHECSSDSADLHPYFTQCNSIRVESGCFMVYEHPNYMGQQFFL RRGDYSDCQRMIGFSNSIRSCRLIPMYNGNYKMRLYDQADMGGQMIEVTEDCPNIMDRFH TSDIHSCQVMDGHWLLYEQPNYRGRMFYLGPGEYRKYSDWGGMAPRIGSLRRITSFN |
Sequence |
20 40 60 80 100 120 140 160 | | | | | | | | MAIGKIIFFEDRNFQGRHHECSSDSADLHPYFTQCNSIRVESGCFMVYEHPNYMGQQFFLRRGDYSDCQRMIGFSNSIRSCRLIPMYNGNYKMRLYDQADMGGQMIEVTEDCPNIMDRFHTSDIHSCQVMDGHWLLYEQPNYRGRMFYLGPGEYRKYSDWGGMAPRIGSLRRITSFN |
Prediction | CCCCSSSSSSCCCCCSSSSSSCCCCCCCCCCCCCCCSSSSSCCSSSSSSCCCCCCSSSSSCCCCCCCHHHHCCCCCCSSSSSSCCCCCCCCSSSSSSCCCCCCCSSSSCCCCCCHHHHCCCCCCCSSSSSCCCSSSSSCCCCCSSSSSSCCCCCCCHHHHCCCCCCSSSSSSSCCCC |
Confidence | 998839999689981327996478774324457531699947729999479996548986797686556616889905454312678887569999668988517998367865787077886427998278389985799833689965775699788368899245688724589 |
H:Helix; S:Strand; C:Coil | |
Sequence |
20 40 60 80 100 120 140 160 | | | | | | | | MAIGKIIFFEDRNFQGRHHECSSDSADLHPYFTQCNSIRVESGCFMVYEHPNYMGQQFFLRRGDYSDCQRMIGFSNSIRSCRLIPMYNGNYKMRLYDQADMGGQMIEVTEDCPNIMDRFHTSDIHSCQVMDGHWLLYEQPNYRGRMFYLGPGEYRKYSDWGGMAPRIGSLRRITSFN |
Prediction | 864320000036604123221433034035214301002035230000122714121110442414324412333230102222444445120200137625333230343132024323344020020351201012336141321103415153244133533301002203538 |
Values range from 0 (buried residue) to 8 (highly exposed residue) | |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | 20 40 60 80 100 120 140 160 | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SS Seq | CCCCSSSSSSCCCCCSSSSSSCCCCCCCCCCCCCCCSSSSSCCSSSSSSCCCCCCSSSSSCCCCCCCHHHHCCCCCCSSSSSSCCCCCCCCSSSSSSCCCCCCCSSSSCCCCCCHHHHCCCCCCCSSSSSCCCSSSSSCCCCCSSSSSSCCCCCCCHHHHCCCCCCSSSSSSSCCCC MAIGKIIFFEDRNFQGRHHECSSDSADLHPYFTQCNSIRVESGCFMVYEHPNYMGQQFFLRRGDYSDCQRMIGFSNSIRSCRLIPMYNGNYKMRLYDQADMGGQMIEVTEDCPNIMDRFHTSDIHSCQVMDGHWLLYEQPNYRGRMFYLGPGEYRKYSDWGGMAPRIGSLRRITSFN | |||||||||||||||||||
1 | 2jdfA | 0.57 | 0.56 | 16.08 | 3.78 | SPARKS-K | ---GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGLSDSIRSCCLIPPHSGAYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDWGAPNAKVGSLRRVMDLY | |||||||||||||
2 | 2m3cA | 0.66 | 0.65 | 18.53 | 2.85 | HHsearch | --MGKIIFYEDRNFGGRYHECMSDCADLHSYFNRCHSIRVESGCFMVYDRTNFMGRQYFLRRGEYPDYMRTMGMNDCVRSCRMIPLHHGSFKMRLYEHSDMGGRMMELMDDCPNLMDRFNMSDFHSCHVMDGHWLVYEQPNYTGRQFYLRPGEYRSYNDWGGVTSRMGSIRRITDL- | |||||||||||||
3 | 2m3cA | 0.66 | 0.65 | 18.53 | 2.46 | FFAS-3D | --MGKIIFYEDRNFGGRYHECMSDCADLHSYFNRCHSIRVESGCFMVYDRTNFMGRQYFLRRGEYPDYMRTMGMNDCVRSCRMIPLHHGSFKMRLYEHSDMGGRMMELMDDCPNLMDRFNMSDFHSCHVMDGHWLVYEQPNYTGRQFYLRPGEYRSYNDWGGVTSRMGSIRRITDL- | |||||||||||||
4 | 2nbrA | 0.57 | 0.55 | 15.93 | 3.86 | CNFpred | ---GKITFYEDRAFQGRSYETTTDCPNLQPYFSRCNSIRVESGCWMLYERPNYQGQQYLLRRGEYPDYQQWMGLSDSIRSCCLIPQT-VSHRLRLYEREDHKGLMMELSEDCPSIQDRFHLSEIRSLHVLEGCWVLYELPNYRGRQYLLRPQEYRRCQDWGAMDAKAGSLRRVVDLY | |||||||||||||
5 | 8gn5A | 0.01 | 0.01 | 0.77 | 0.67 | DEthreader | --------------------------PMAQKA---------------A-MAAMGSLVITSPDAIGTNFVADAIMFTSYFFLPVLTKS-TATGITVSG----------------------A-QSTVTLATTGMDKISFAGVKQDATFSVVRVVGTH-V-EITPKPVSLAMVNILNVKD | |||||||||||||
6 | 8xpcA | 0.07 | 0.05 | 1.92 | 0.67 | DEthreader | YRFSIAWPFAK---GQYNGMTIYHW-DLPQWADLIEWYYALWITLPSSSYPGHDAVSLLHGKAVEI----------------GITLN---LNEVFP--A-SDSD----------------DDKVAAQAD---QNRWPMVEYFGAK--NYYTRAVVQKGN-LLDA------RLEYTMP | |||||||||||||
7 | 2m3cA | 0.66 | 0.65 | 18.53 | 3.68 | SPARKS-K | --MGKIIFYEDRNFGGRYHECMSDCADLHSYFNRCHSIRVESGCFMVYDRTNFMGRQYFLRRGEYPDYMRTMGMNDCVRSCRMIPLHHGSFKMRLYEHSDMGGRMMELMDDCPNLMDRFNMSDFHSCHVMDGHWLVYEQPNYTGRQFYLRPGEYRSYNDWGGVTSRMGSIRRITDL- | |||||||||||||
8 | 3qk3A | 0.31 | 0.31 | 9.21 | 0.90 | CEthreader | --SYKVILYELENFQGKRCELSAECPSLT-LLEKVGSIQVESGPWLAFESRAFRGEQFVLEKGDYPRWDAWSNDSDSLLSLRPLNIDSPHHKLHLFENPAFSGRKMEIVDDVPSLWAHGFQDRVASVRAINGTWVGYEFPGYRGRQYVFERGEYRHWNEWDASQPQLQSVRRIRD-- | |||||||||||||
9 | 1zwmA | 0.49 | 0.48 | 13.95 | 2.80 | HHsearch | KTGGKISFYEDRNFQGRRYDCDCDCADFRSYLSRCNSIRVEGGTWAVYERPNFSGHMYILPQGEYPEYQRWMGLNDRLGSCRAVHLSGGQAKIQVFEKGDFNGQMYETTEDCPSIMEQFHLREIHSCKVVEGTWIFYELPNYRGRQYLLDKKEYRKPVDWGAASPAIQSFRRIVE-- | |||||||||||||
10 | 2jdfA | 0.57 | 0.56 | 16.08 | 2.46 | FFAS-3D | ---GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGLSDSIRSCCLIPPHSGAYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDWGAPNAKVGSLRRVMDL- | |||||||||||||
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References: | |
1. | Wei Zheng, Qiqige Wuyun, Yang Li, Quancheng Liu, Xiaogen Zhou, Yiheng Zhu, P. Lydia Freddolino, Yang Zhang. Integrating deep learning potentials with I-TASSER for single- and multi-domain protein structure prediction. Submitted. 2023. |