>S4REP0_PETMA (176 residues) TLGCAPQIIFFEERDFKGRRFEYSQDCMNMASNLSRCNSIRVEGGAWVIYERPDFKGNMY IMEPGEYPEYQRWMGYNDHIGSCRSIRGVSIPTCGQCTGGGEEEGAERKEDCPHLHDRFN MREVRSVRVHDGAWVAYEEPHYRGRQYLLEKGDYRKCSEYGAMSPTMQSVRCIRRF |
Sequence |
20 40 60 80 100 120 140 160 | | | | | | | | TLGCAPQIIFFEERDFKGRRFEYSQDCMNMASNLSRCNSIRVEGGAWVIYERPDFKGNMYIMEPGEYPEYQRWMGYNDHIGSCRSIRGVSIPTCGQCTGGGEEEGAERKEDCPHLHDRFNMREVRSVRVHDGAWVAYEEPHYRGRQYLLEKGDYRKCSEYGAMSPTMQSVRCIRRF |
Prediction | CCCCCCSSSSSSCCCCCSSSSSSCCCCCCCCCCCCCSSSSSSSCCCSSSSSCCCCCSSSSSSCCCCCCCHHHHCCCCCCSSSSSSSCCCCCCCCSSSCCCCCCCCSSSCCCCCCHHHHCCCCCCSSSSSCCCCSSSSSCCCCCSSSSSSCCCCCCCHHHHCCCCCCSSSSSSSCCC |
Confidence | 99999659999679980468996688865104567132799957418998289980158997488488978826899851668873587764112541356766336635687668827889731789746819997089983048997477569978826889841238871369 |
H:Helix; S:Strand; C:Coil | |
Sequence |
20 40 60 80 100 120 140 160 | | | | | | | | TLGCAPQIIFFEERDFKGRRFEYSQDCMNMASNLSRCNSIRVEGGAWVIYERPDFKGNMYIMEPGEYPEYQRWMGYNDHIGSCRSIRGVSIPTCGQCTGGGEEEGAERKEDCPHLHDRFNMREVRSVRVHDGAWVAYEEPHYRGRQYLLEKGDYRKCSEYGAMSPTMQSVRCIRRF |
Prediction | 85634230000036604023221443154046315301002034230000033614121110442413324413434230100110334435434332345634234144423203432334302002034120000233604121010332515324413343430201333476 |
Values range from 0 (buried residue) to 8 (highly exposed residue) | |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | 20 40 60 80 100 120 140 160 | | | | | | | | | |||||||||||||
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SS Seq | CCCCCCSSSSSSCCCCCSSSSSSCCCCCCCCCCCCCSSSSSSSCCCSSSSSCCCCCSSSSSSCCCCCCCHHHHCCCCCCSSSSSSSCCCCCCCCSSSCCCCCCCCSSSCCCCCCHHHHCCCCCCSSSSSCCCCSSSSSCCCCCSSSSSSCCCCCCCHHHHCCCCCCSSSSSSSCCC TLGCAPQIIFFEERDFKGRRFEYSQDCMNMASNLSRCNSIRVEGGAWVIYERPDFKGNMYIMEPGEYPEYQRWMGYNDHIGSCRSIRGVSIPTCGQCTGGGEEEGAERKEDCPHLHDRFNMREVRSVRVHDGAWVAYEEPHYRGRQYLLEKGDYRKCSEYGAMSPTMQSVRCIRRF | |||||||||||||||||||
1 | 1zwmA | 0.46 | 0.44 | 12.93 | 1.17 | DEthreader | -SKTGGKISFYEDRNFQGRRYDCDCDCADFRSYLSRCNSIRVEGGTWAVYERPNFSGHMYILPQGEYPEYQRWMGLNDRLGSCRAVHLSAKIQVFEK--FNGQMYETTED-CPSIMEQFHLREIHSCKVVEGTWIFYELPYRGR-QYLLDKKEYRKPVDWGAASPAIQSFRRIV-E | |||||||||||||
2 | 1zwmA | 0.40 | 0.27 | 8.04 | 0.83 | DEthreader | --KTGGKISFYEDRNFQGRRYDCDCDCADFRSYLSRCNSIRVEGGTWAVYERPNFSGHMYILPQGEYPEYQRMGLND-RLGSCRAVHLSSQAKI---------TTEDC------PSIMEQFH-----------------IHSC--K-VVEG-------------------LDKKEY | |||||||||||||
3 | 2jdfA | 0.43 | 0.41 | 12.01 | 3.68 | SPARKS-K | -----GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGLSDSIRSCCLIPPHRMKIYDRDEL--RGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDWGAPNAKVGSLRRVMDL | |||||||||||||
4 | 2jdfA | 0.43 | 0.41 | 12.01 | 0.89 | CEthreader | -----GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGLSDSIRSCCLIPPYRMKIYDRDEL--RGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDWGAPNAKVGSLRRVMDL | |||||||||||||
5 | 2jdfA | 0.44 | 0.42 | 12.31 | 3.04 | MUSTER | -----GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGLSDSIRSCCLIPPHSMKIYDRDELRG--QMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDWGAPNAKVGSLRRVMDL | |||||||||||||
6 | 1zwmA | 0.51 | 0.49 | 14.32 | 2.80 | HHsearch | -SKTGGKISFYEDRNFQGRRYDCDCDCADFRSYLSRCNSIRVEGGTWAVYERPNFSGHMYILPQGEYPEYQRWMGLNDRLGSCRAVHLQKIQVFEKGDFNG--QMYETTEDCPSIMEQFHLREIHSCKVVEGTWIFYELPNYRGRQYLLDKKEYRKPVDWGAASPAIQSFRRIVE- | |||||||||||||
7 | 1zwmA | 0.50 | 0.49 | 14.18 | 2.20 | FFAS-3D | --KTGGKISFYEDRNFQGRRYDCDCDCADFRSYLSRCNSIRVEGGTWAVYERPNFSGHMYILPQGEYPEYQRWMGLNDRLGSCRAVHLSQAKIQVFEKGDFNGQMYETTEDCPSIMEQFHLREIHSCKVVEGTWIFYELPNYRGRQYLLDKKEYRKPVDWGAASPAIQSFRRIVE- | |||||||||||||
8 | 5vh1A | 0.48 | 0.47 | 13.55 | 4.09 | CNFpred | --RAGPKVTFYEDKNFLGRRYECDADCPDFHTYLNRCNSIRVEGGTWVAYERPNYSGNMYVLRRGEYPDYHHWMGLNDRLGSCKAVH-GHIQVFEKGDFG--GQMFEATEDCPSILEECHFREVHACRVLEGIWVFYEHPNYRGRQYLLPKGEYRQPVEWGAVTPAVQSFRSIAE- | |||||||||||||
9 | 2jdfA | 0.35 | 0.32 | 9.67 | 1.17 | DEthreader | -----GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGLSDSIRSCCLIPHAYRMKIYDR--LRGQMSELTDDCL-SVQDRFHLTEIHSLNVLEGSWILY-EMRGRQ-YLLRP-G-E-YRRFLDWGANAKVGLRRVMDL | |||||||||||||
10 | 4ag4A | 0.05 | 0.04 | 1.92 | 0.83 | DEthreader | ----PSDISAS---SSWSTAARH-----RLESSDGAWCYLQVDLQLHVLVGTQ-VVLKDLMARLVRF-YPRA----VCLRVELYGCLWLLSYTAPV-----GGLQYLGADGVVGFGYDYVGWSYVEMEFEFDAMQVHCNNMRARAVSVPLRFLQCRFL---FAGWLLFSEISFIS- | |||||||||||||
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Top 10 structural analogs in PDB (as identified by
TM-align)
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Top 5 enzyme homologs in PDB
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Template proteins with similar binding site:
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References: | |
1. | Wei Zheng, Qiqige Wuyun, Yang Li, Quancheng Liu, Xiaogen Zhou, Yiheng Zhu, P. Lydia Freddolino, Yang Zhang. Integrating deep learning potentials with I-TASSER for single- and multi-domain protein structure prediction. Submitted. 2023. |