>B0S6M3_DANRE (175 residues) MMGKVIFYEDRNFQGRSYECMGDCGDFSSYMNRCHSCRVESGCWMMYDQPNYMGSGYFFR RGEYADYMSMFGMNNCIRSCRMIPMYRGSYRMRIYERDNFMGQMYEMMDDCDSIQDRYRM SHCQSCHVMDGHWLFYDQPHYRGRMWHFGPGQYRNFSNYGGMRFMSMRRIMDSWY |
Sequence |
20 40 60 80 100 120 140 160 | | | | | | | | MMGKVIFYEDRNFQGRSYECMGDCGDFSSYMNRCHSCRVESGCWMMYDQPNYMGSGYFFRRGEYADYMSMFGMNNCIRSCRMIPMYRGSYRMRIYERDNFMGQMYEMMDDCDSIQDRYRMSHCQSCHVMDGHWLFYDQPHYRGRMWHFGPGQYRNFSNYGGMRFMSMRRIMDSWY |
Prediction | CCCSSSSSSCCCCCSSSSSSCCCCCCCCCCCCCSSSSSSSCCCSSSSSCCCCSSSSSSSCCCCCCCHHHHCCCCCCSSSSSCCCCCCCCCSSSSSSCCCCCCCSSSSCCCCCCHHHCCCCCCCCSSSSCCCCSSSSSCCCCCSSSSSSCCCCCCCHHHCCCCCSSSSSSCCCCCC |
Confidence | 9965999947998122799668887644567722279994731899837998035899758858775773688882344220367788756999956898851799836886578706778741799827929997379983268997477679977728986236876010259 |
H:Helix; S:Strand; C:Coil | |
Sequence |
20 40 60 80 100 120 140 160 | | | | | | | | MMGKVIFYEDRNFQGRSYECMGDCGDFSSYMNRCHSCRVESGCWMMYDQPNYMGSGYFFRRGEYADYMSMFGMNNCIRSCRMIPMYRGSYRMRIYERDNFMGQMYEMMDDCDSIQDRYRMSHCQSCHVMDGHWLFYDQPHYRGRMWHFGPGQYRNFSNYGGMRFMSMRRIMDSWY |
Prediction | 7512010003660412322034314403531430100303523000013361402101044341332441243322012132245444423020123662633323034314202432335402002036320000223614021110342515326514233020012036438 |
Values range from 0 (buried residue) to 8 (highly exposed residue) | |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | 20 40 60 80 100 120 140 160 | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SS Seq | CCCSSSSSSCCCCCSSSSSSCCCCCCCCCCCCCSSSSSSSCCCSSSSSCCCCSSSSSSSCCCCCCCHHHHCCCCCCSSSSSCCCCCCCCCSSSSSSCCCCCCCSSSSCCCCCCHHHCCCCCCCCSSSSCCCCSSSSSCCCCCSSSSSSCCCCCCCHHHCCCCCSSSSSSCCCCCC MMGKVIFYEDRNFQGRSYECMGDCGDFSSYMNRCHSCRVESGCWMMYDQPNYMGSGYFFRRGEYADYMSMFGMNNCIRSCRMIPMYRGSYRMRIYERDNFMGQMYEMMDDCDSIQDRYRMSHCQSCHVMDGHWLFYDQPHYRGRMWHFGPGQYRNFSNYGGMRFMSMRRIMDSWY | |||||||||||||||||||
1 | 1zwmA | 0.42 | 0.41 | 12.09 | 1.33 | DEthreader | TGGKISFYEDRNFQGRRYDCDCDCADFRSYLSRCNSIRVEGGTWAVYERPNFSGHMYILPQGEYPEYQRWMGLNDRLGSCRAVHLSSGQAKIQVFEKGDFNGQMYETTEDCPSIMEQFHLREIHSCKVVEGTWIFYELPNYRGRQYLLDKKEYRKPVDAASPAIQSFRRIV-E-- | |||||||||||||
2 | 1zwmA | 0.38 | 0.37 | 10.85 | 1.33 | DEthreader | TGGKISFYEDRNFQGRRYDCDCDCADFRSYLSRCNSIRVEGGTWAVYERPNFSGHMYILPQGEYPEYQRWGLND-RLGSCRAVHLSSGQAKIQVFEKGDFNGQMYETTEDCPSIMEQFHLREIHSCKVVEGTWIFYELPYRGRQYLLDKKEYR-KPVDAASPAIQSFRRIVE--- | |||||||||||||
3 | 2jdfA | 0.51 | 0.50 | 14.56 | 3.76 | SPARKS-K | --GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGLSDSIRSCCLIPPHSGAYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRWGA-PNAKVGSLRRVMDLYL | |||||||||||||
4 | 2jdfA | 0.51 | 0.51 | 14.72 | 0.89 | CEthreader | --GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGLSDSIRSCCLIPPHSGAYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDAPNAKVGSLRRVMDLYL | |||||||||||||
5 | 2jdfA | 0.52 | 0.51 | 14.87 | 3.15 | MUSTER | --GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGLSDSIRSCCLIPPHSGAYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDWGNAKVGSLRRVMDLYL | |||||||||||||
6 | 2m3cA | 0.60 | 0.58 | 16.71 | 2.85 | HHsearch | -MGKIIFYEDRNFGGRYHECMSDCADLHSYFNRCHSIRVESGCFMVYDRTNFMGRQYFLRRGEYPDYMRTMGMNDCVRSCRMIPLHHGSFKMRLYEHSDMGGRMMELMDDCPNLMDRFNMSDFHSCHVMDGHWLVYEQPNYTGRQFYLRPGEYRSWGGV-TSRMGSIRRITDL-- | |||||||||||||
7 | 2m3cA | 0.60 | 0.59 | 17.03 | 2.46 | FFAS-3D | -MGKIIFYEDRNFGGRYHECMSDCADLHSYFNRCHSIRVESGCFMVYDRTNFMGRQYFLRRGEYPDYMRTMGMNDCVRSCRMIPLHHGSFKMRLYEHSDMGGRMMELMDDCPNLMDRFNMSDFHSCHVMDGHWLVYEQPNYTGRQFYLRPGEYRSYNDWGGSRMGSIRRITDL-- | |||||||||||||
8 | 2v2uA | 0.49 | 0.48 | 13.94 | 3.76 | CNFpred | --GKITFFEDRSFQGRCYECSSDCPNLQTYFSRCNSVRVDSGCWMLYERPNYQGHQYFLRRGEYPDYQQWMGFSDSIRSCRLIPH-AGSHRMRLYEKEDHKGVMMELSEDCSCIQDRFHLSEVRSLQVLEGCWVLYEMPNYRGRQYLLRPQEYRRFQDWGSAKAGSLRRVVDLY- | |||||||||||||
9 | 2jdfA | 0.45 | 0.43 | 12.70 | 1.17 | DEthreader | --GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGLSDSIRSCCLIPPHSGAYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILY-EMPRGRQYLLRPG-EY-RRFLDAPNAKVGSLRRVMDLL | |||||||||||||
10 | 2jdfA | 0.46 | 0.44 | 12.83 | 1.17 | DEthreader | --GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWGLSD-SIRSCCLIPPHSGAYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNV-LEGSWILYEMYRGRQYLLRPGE-YRRFLDAPNAKVGSLRRVM---- | |||||||||||||
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References: | |
1. | Wei Zheng, Qiqige Wuyun, Yang Li, Quancheng Liu, Xiaogen Zhou, Yiheng Zhu, P. Lydia Freddolino, Yang Zhang. Integrating deep learning potentials with I-TASSER for single- and multi-domain protein structure prediction. Submitted. 2023. |