>Q5XTM9_DANRE (174 residues) MGKIIFYEDRNFQGRSYECSTDCADMSTYLSRCNSCRVESGCFVVYDRPNFMGNQFFMRR GEYADYMRMGMSDGIRSCRVVPQYRGPYRMRIYERDNFGGQMYELTDDCDSFMDRYRISD CQSCHVMDGHWLMYEQPHYRGRMIYFRPGEYRSFRDMGYSNVRFSSVRRIVDLC |
Sequence |
20 40 60 80 100 120 140 160 | | | | | | | | MGKIIFYEDRNFQGRSYECSTDCADMSTYLSRCNSCRVESGCFVVYDRPNFMGNQFFMRRGEYADYMRMGMSDGIRSCRVVPQYRGPYRMRIYERDNFGGQMYELTDDCDSFMDRYRISDCQSCHVMDGHWLMYEQPHYRGRMIYFRPGEYRSFRDMGYSNVRFSSVRRIVDLC |
Prediction | CCSSSSSSCCCCCSSSSSSCCCCCCCCCCCCSSSSSSSSCCCSSSSSCCCCCCSSSSSCCCCCCCHHHCCCCCSSCSSSSCCCCCCCCSSSSSSCCCCCCCSSSSCCCCCCHHHHCCCCCCCSSSSCCCCSSSSCCCCCCSSSSSSCCCCCCCHHHHCCCCCCSSSSSSHHHCC |
Confidence | 987999937998123799568987620234702079993731899847998334899769757765446899803125740578987469999558988637998168875688448887318998178299972899834689976886799789478999446677611169 |
H:Helix; S:Strand; C:Coil | |
Sequence |
20 40 60 80 100 120 140 160 | | | | | | | | MGKIIFYEDRNFQGRSYECSTDCADMSTYLSRCNSCRVESGCFVVYDRPNFMGNQFFMRRGEYADYMRMGMSDGIRSCRVVPQYRGPYRMRIYERDNFGGQMYELTDDCDSFMDRYRISDCQSCHVMDGHWLMYEQPHYRGRMIYFRPGEYRSFRDMGYSNVRFSSVRRIVDLC |
Prediction | 742000003660402322144313303521430100203623000012271412111044331331431333220102212444444120101236625343230323222045333344020020361300001226041211103435143243132423301002213748 |
Values range from 0 (buried residue) to 8 (highly exposed residue) | |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | 20 40 60 80 100 120 140 160 | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SS Seq | CCSSSSSSCCCCCSSSSSSCCCCCCCCCCCCSSSSSSSSCCCSSSSSCCCCCCSSSSSCCCCCCCHHHCCCCCSSCSSSSCCCCCCCCSSSSSSCCCCCCCSSSSCCCCCCHHHHCCCCCCCSSSSCCCCSSSSCCCCCCSSSSSSCCCCCCCHHHHCCCCCCSSSSSSHHHCC MGKIIFYEDRNFQGRSYECSTDCADMSTYLSRCNSCRVESGCFVVYDRPNFMGNQFFMRRGEYADYMRMGMSDGIRSCRVVPQYRGPYRMRIYERDNFGGQMYELTDDCDSFMDRYRISDCQSCHVMDGHWLMYEQPHYRGRMIYFRPGEYRSFRDMGYSNVRFSSVRRIVDLC | |||||||||||||||||||
1 | 1zwmA | 0.48 | 0.47 | 13.71 | 1.33 | DEthreader | GGKISFYEDRNFQGRRYDCDCDCADFRSYLSRCNSIRVEGGTWAVYERPNFSGHMYILPQGEYPEYQRWMGNDRLGSCRAVHLSSGQAKIQVFEKGDFNGQMYETTEDCPSIMEQFHLREIHSCKVVEGTWIFYELPNYRGRQYLLDKKEYRKPVDWGAASPAIQSFRRIVE-- | |||||||||||||
2 | 1zwmA | 0.49 | 0.48 | 13.86 | 1.33 | DEthreader | GGKISFYEDRNFQGRRYDCDCDCADFRSYLSRCNSIRVEGGTWAVYERPNFSGHMYILPQGEYPEYQRWGLNDRLGSCRAVHLSSGQAKIQVFEKGDFNGQMYETTEDCPSIMEQFHLREIHSCKVVEGTWIFYELPNYRGRQYLLDKKEYRKPVDWAASPA-IQSFRRIV-E- | |||||||||||||
3 | 2jdfA | 0.57 | 0.57 | 16.36 | 3.76 | SPARKS-K | -GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWGLSDSIRSCCLIPPHSGAYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDWGAPNAKVGSLRRVMDLY | |||||||||||||
4 | 1blbC | 0.32 | 0.32 | 9.53 | 0.89 | CEthreader | NPKIIIFEQENFQGHSHELNGPCPNLKEGVEKAGSVLVQAGPWVGYEQANCKGEQFVFEKGEYPRWDSWTRTDSLSSLRPIKVDSQEHKITLYENPNFTGKKMEVIDDVPSFHAHGYQEKVSSVRVQSGTWVGYQYPGYRGLQYLLEKGDYKDSGDFGAPQPQVQSVRRIRDMQ | |||||||||||||
5 | 2jdfA | 0.57 | 0.56 | 16.20 | 3.24 | MUSTER | -GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMLSDSIRSCCLIPPHSGAYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDWGAPNAKVGSLRRVMDLY | |||||||||||||
6 | 2m3cA | 0.64 | 0.63 | 18.06 | 2.86 | HHsearch | MGKIIFYEDRNFGGRYHECMSDCADLHSYFNRCHSIRVESGCFMVYDRTNFMGRQYFLRRGEYPDYMRTGMNDCVRSCRMIPLHHGSFKMRLYEHSDMGGRMMELMDDCPNLMDRFNMSDFHSCHVMDGHWLVYEQPNYTGRQFYLRPGEYRSYNDWGGVTSRMGSIRRITDL- | |||||||||||||
7 | 2jdfA | 0.57 | 0.56 | 16.20 | 2.43 | FFAS-3D | -GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGSDSIRSCCLIPPHSGAYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDWGAPNAKVGSLRRVMDL- | |||||||||||||
8 | 2v2uA | 0.53 | 0.52 | 15.11 | 4.00 | CNFpred | -GKITFFEDRSFQGRCYECSSDCPNLQTYFSRCNSVRVDSGCWMLYERPNYQGHQYFLRRGEYPDYQQWMGSDSIRSCRLIPH-AGSHRMRLYEKEDHKGVMMELSEDCSCIQDRFHLSEVRSLQVLEGCWVLYEMPNYRGRQYLLRPQEYRRFQDWGSVDAKAGSLRRVVDLY | |||||||||||||
9 | 2jdfA | 0.53 | 0.52 | 15.10 | 1.17 | DEthreader | -GKITFYEDRAFQGRSYECTTDCPNLQPFSR-CNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGSDSIRSCCLIPPHSGAYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNRGR-QYLLRPGEYRRFLDWGAPNAKVGSLRRVMDLY | |||||||||||||
10 | 2m3cA | 0.60 | 0.60 | 17.13 | 1.17 | DEthreader | MGKIIFYEDRNFGGRYHECMSDCADLHSYFNRCHSIRVESGCFMVYDRTNFMGRQYFLRRGEYPDYMRTMMNDCVRSCRMIPLHHGSFKMRLYEHSDMGGRMMELMDDCPNLMDRFNMSDFHSCHVMDGHWLVYEQPNYTGRQFYLRPGEY-RSYNDGGVTSRMGSIRRIT-DL | |||||||||||||
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References: | |
1. | Wei Zheng, Qiqige Wuyun, Yang Li, Quancheng Liu, Xiaogen Zhou, Yiheng Zhu, P. Lydia Freddolino, Yang Zhang. Integrating deep learning potentials with I-TASSER for single- and multi-domain protein structure prediction. Submitted. 2023. |