>E9QE97_DANRE (178 residues) MGRVSTKIIFFEDKNFQGRRHECDSDCSDFHTYLNRCNSIRVESGAWVVYERPNFIGYQY VLTRGEYPDYQRWMGLNDRLCSCKMIHFVSGSEHKIQLYDKGDFAGQVYETTEDCPSVVE RFRTREVHSCKVLDGIWIFYEHPNYRGRQYLLQKGEYRKPVDWGAVCPTVQSFKRLTE |
Sequence |
20 40 60 80 100 120 140 160 | | | | | | | | MGRVSTKIIFFEDKNFQGRRHECDSDCSDFHTYLNRCNSIRVESGAWVVYERPNFIGYQYVLTRGEYPDYQRWMGLNDRLCSCKMIHFVSGSEHKIQLYDKGDFAGQVYETTEDCPSVVERFRTREVHSCKVLDGIWIFYEHPNYRGRQYLLQKGEYRKPVDWGAVCPTVQSFKRLTE |
Prediction | CCCCCCSSSSSSCCCCSSSSSSSCCCCCCCCCCCCSSSSSSSSCCCSSSSSCCCCCCSSSSSCCCCCCCHHHHCCCCCCSSSSSSCCCCCCCCCSSSSSSCCCCCCCSSSSSCCCCCHHHCCCCCCCCSSSSCCCCSSSSSCCCCCSSSSSSCCCCCCCHHHHCCCCCCSSSSSSCCC |
Confidence | 9989974999967998045899668887633445704589992872999947998224898679868886772689994367877057789985699993799985179981688766762688875379983782999827998236899758767997882788994212787469 |
H:Helix; S:Strand; C:Coil | |
Sequence |
20 40 60 80 100 120 140 160 | | | | | | | | MGRVSTKIIFFEDKNFQGRRHECDSDCSDFHTYLNRCNSIRVESGAWVVYERPNFIGYQYVLTRGEYPDYQRWMGLNDRLCSCKMIHFVSGSEHKIQLYDKGDFAGQVYETTEDCPSVVERFRTREVHSCKVLDGIWIFYEHPNYRGRQYLLQKGEYRKPVDWGAVCPTVQSFKRLTE |
Prediction | 8753522000003660402322033314404531530100303513000012271402101044141432541244423010011043444451201001366153332202231220244333430200213411000022371402111034351432431224333010133258 |
Values range from 0 (buried residue) to 8 (highly exposed residue) | |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | 20 40 60 80 100 120 140 160 | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SS Seq | CCCCCCSSSSSSCCCCSSSSSSSCCCCCCCCCCCCSSSSSSSSCCCSSSSSCCCCCCSSSSSCCCCCCCHHHHCCCCCCSSSSSSCCCCCCCCCSSSSSSCCCCCCCSSSSSCCCCCHHHCCCCCCCCSSSSCCCCSSSSSCCCCCSSSSSSCCCCCCCHHHHCCCCCCSSSSSSCCC MGRVSTKIIFFEDKNFQGRRHECDSDCSDFHTYLNRCNSIRVESGAWVVYERPNFIGYQYVLTRGEYPDYQRWMGLNDRLCSCKMIHFVSGSEHKIQLYDKGDFAGQVYETTEDCPSVVERFRTREVHSCKVLDGIWIFYEHPNYRGRQYLLQKGEYRKPVDWGAVCPTVQSFKRLTE | |||||||||||||||||||
1 | 1zwmA | 0.67 | 0.67 | 19.04 | 1.33 | DEthreader | -SKTGGKISFYEDRNFQGRRYDCDCDCADFRSYLSRCNSIRVEGGTWAVYERPNFSGHMYILPQGEYPEYQRWMGLNDRLGSCRAVHLSSGGQAKIQVFEKGDFNGQMYETTEDCPSIMEQFHLREIHSCKVVEGTWIFYELPNYRGRQYLLDKKEYRKPVDWGAASPAIQSFRRIVE | |||||||||||||
2 | 1zwmA | 0.67 | 0.66 | 18.72 | 1.33 | DEthreader | ---TGGKISFYEDRNFQGRRYDCDCDCADFRSYLSRCNSIRVEGGTWAVYERPNSGH-MYILPQGEYPEYQRWMGLNDRLGSCRAVHLSSGGQAKIQVFEKGDFNGQMYETTEDCPSIMEQFHLREIHSCKVVEGTWIFYELPNYRGRQYLLDKKEYRKPVDWGAASPAIQSFRRIVE | |||||||||||||
3 | 2jdfA | 0.55 | 0.53 | 15.38 | 3.69 | SPARKS-K | -----GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGLSDSIRSCCLIPPHSG-AYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDWGAPNAKVGSLRRVMD | |||||||||||||
4 | 2jdfA | 0.54 | 0.52 | 15.07 | 0.90 | CEthreader | -----GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGLSDSIRSCCLIPPH-SGAYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDWGAPNAKVGSLRRVMD | |||||||||||||
5 | 1zwmA | 0.67 | 0.67 | 19.04 | 3.11 | MUSTER | -SKTGGKISFYEDRNFQGRRYDCDCDCADFRSYLSRCNSIRVEGGTWAVYERPNFSGHMYILPQGEYPEYQRWMGLNDRLGSCRAVHLSSGGQAKIQVFEKGDFNGQMYETTEDCPSIMEQFHLREIHSCKVVEGTWIFYELPNYRGRQYLLDKKEYRKPVDWGAASPAIQSFRRIVE | |||||||||||||
6 | 1zwmA | 0.67 | 0.67 | 19.04 | 2.84 | HHsearch | -SKTGGKISFYEDRNFQGRRYDCDCDCADFRSYLSRCNSIRVEGGTWAVYERPNFSGHMYILPQGEYPEYQRWMGLNDRLGSCRAVHLSSGGQAKIQVFEKGDFNGQMYETTEDCPSIMEQFHLREIHSCKVVEGTWIFYELPNYRGRQYLLDKKEYRKPVDWGAASPAIQSFRRIVE | |||||||||||||
7 | 1zwmA | 0.67 | 0.67 | 19.04 | 2.57 | FFAS-3D | -SKTGGKISFYEDRNFQGRRYDCDCDCADFRSYLSRCNSIRVEGGTWAVYERPNFSGHMYILPQGEYPEYQRWMGLNDRLGSCRAVHLSSGGQAKIQVFEKGDFNGQMYETTEDCPSIMEQFHLREIHSCKVVEGTWIFYELPNYRGRQYLLDKKEYRKPVDWGAASPAIQSFRRIVE | |||||||||||||
8 | 5vh1A | 0.69 | 0.68 | 19.34 | 4.17 | CNFpred | --RAGPKVTFYEDKNFLGRRYECDADCPDFHTYLNRCNSIRVEGGTWVAYERPNYSGNMYVLRRGEYPDYHHWMGLNDRLGSCKAVHIPSGAQGHIQVFEKGDFGGQMFEATEDCPSILEECHFREVHACRVLEGIWVFYEHPNYRGRQYLLPKGEYRQPVEWGAVTPAVQSFRSIAE | |||||||||||||
9 | 2jdfA | 0.41 | 0.39 | 11.40 | 1.17 | DEthreader | -----GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGLSDSIRSCCLIPPHSG-AYRMKIYDRDELRGQMSELDDCLSVQDFHLT--EIHSLNVLEGSWILY-EMPRGRQYLLRP-G-EYRRFLDWGAPNAKVGLRRVMD | |||||||||||||
10 | 2jdfA | 0.41 | 0.39 | 11.57 | 1.17 | DEthreader | -----GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIY-ERPQGHQYFLRR-G-EYPDYQQWMGLSDSIRSCCLIPPHSGAYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDWGAPNAKVGSLRRVMD | |||||||||||||
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References: | |
1. | Wei Zheng, Qiqige Wuyun, Yang Li, Quancheng Liu, Xiaogen Zhou, Yiheng Zhu, P. Lydia Freddolino, Yang Zhang. Integrating deep learning potentials with I-TASSER for single- and multi-domain protein structure prediction. Submitted. 2023. |