>Q5XTP1_DANRE (174 residues) MGKIVFFEDKNFQGRRYECDSDCSDFHTYLSRCNSIRVESGAWVVYERPNYTGNRYLLTR GEYPEYLGWMGLNDCLSSCKIIRFTSGMQYKVQLYDKPDFTGQAIESIEDCPSVQERFRL REVNSCKVLDGYWIFYEHPNYRGHQYFLEKGNYRKPVDWGAICPSVQSFRRFTE |
Sequence |
20 40 60 80 100 120 140 160 | | | | | | | | MGKIVFFEDKNFQGRRYECDSDCSDFHTYLSRCNSIRVESGAWVVYERPNYTGNRYLLTRGEYPEYLGWMGLNDCLSSCKIIRFTSGMQYKVQLYDKPDFTGQAIESIEDCPSVQERFRLREVNSCKVLDGYWIFYEHPNYRGHQYFLEKGNYRKPVDWGAICPSVQSFRRFTE |
Prediction | CCSSSSSSCCCCSSSSSSSCCCCCCCCCCCCCSSSSSSSCCCSSSSSCCCCCCSSSSSCCCCCCCHHHHCCCCCCCCSCCSSCCCCCCCCSSSSSSCCCCCCSSSSSCCCCCCHHHHCCCCCCCSSSSCCCCSSSSSCCCCCSSSSSSCCCCCCCHHHHCCCCCCSSSSSSCCC |
Confidence | 984999837998145899767887521234723379992611899837999534899769868665661678897421100115689873599981799984179983778777880788973079981792899847998347999757867997883678995334787369 |
H:Helix; S:Strand; C:Coil | |
Sequence |
20 40 60 80 100 120 140 160 | | | | | | | | MGKIVFFEDKNFQGRRYECDSDCSDFHTYLSRCNSIRVESGAWVVYERPNYTGNRYLLTRGEYPEYLGWMGLNDCLSSCKIIRFTSGMQYKVQLYDKPDFTGQAIESIEDCPSVQERFRLREVNSCKVLDGYWIFYEHPNYRGHQYFLEKGNYRKPVDWGAICPSVQSFRRFTE |
Prediction | 732010003660512322044314404521530100203513000013271413111044341432440233343121231133443442201002376153432313431310243333430100203532000012450302100034351532441224343020133348 |
Values range from 0 (buried residue) to 8 (highly exposed residue) | |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | 20 40 60 80 100 120 140 160 | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SS Seq | CCSSSSSSCCCCSSSSSSSCCCCCCCCCCCCCSSSSSSSCCCSSSSSCCCCCCSSSSSCCCCCCCHHHHCCCCCCCCSCCSSCCCCCCCCSSSSSSCCCCCCSSSSSCCCCCCHHHHCCCCCCCSSSSCCCCSSSSSCCCCCSSSSSSCCCCCCCHHHHCCCCCCSSSSSSCCC MGKIVFFEDKNFQGRRYECDSDCSDFHTYLSRCNSIRVESGAWVVYERPNYTGNRYLLTRGEYPEYLGWMGLNDCLSSCKIIRFTSGMQYKVQLYDKPDFTGQAIESIEDCPSVQERFRLREVNSCKVLDGYWIFYEHPNYRGHQYFLEKGNYRKPVDWGAICPSVQSFRRFTE | |||||||||||||||||||
1 | 1zwmA | 0.64 | 0.64 | 18.38 | 1.50 | DEthreader | GGKISFYEDRNFQGRRYDCDCDCADFRSYLSRCNSIRVEGGTWAVYERPNFSGHMYILPQGEYPEYQRWMGLNDRLGSCRAVHLSSGGQAKIQVFEKGDFNGQMYETTEDCPSIMEQFHLREIHSCKVVEGTWIFYELPNYRGRQYLLDKKEYRKPVDWGAASPAIQSFRRIVE | |||||||||||||
2 | 1zwmA | 0.62 | 0.61 | 17.60 | 1.33 | DEthreader | GGKISFYEDRNFQGRRYDCDCDCADFRSYLSRCNSIRVEGGTWAVYERPNFSGHMYILPQGEYPEYQRWGLND-RLGSCRAVHLSSGGQAKIQVFEKGDFNGQMYETTEDCPSIMEQFHLREIHSCKVVEGTWIFYELPNYRGRQYLLDKKEYRKPVDWGAASPAIQSFRRIVE | |||||||||||||
3 | 2jdfA | 0.54 | 0.53 | 15.42 | 3.76 | SPARKS-K | -GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGLSDSIRSCCLIP-PHSGAYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDWGAPNAKVGSLRRVMD | |||||||||||||
4 | 3qk3A | 0.34 | 0.34 | 10.14 | 0.90 | CEthreader | SYKVILYELENFQGKRCELSAECPSLT-LLEKVGSIQVESGPWLAFESRAFRGEQFVLEKGDYPRWDAWSRDSDSLLSLRPLNI-DSPHHKLHLFENPAFSGRKMEIVDDVPSLWAHGFQDRVASVRAINGTWVGYEFPGYRGRQYVFERGEYRHWNEWDASQPQLQSVRRIRD | |||||||||||||
5 | 2jdfA | 0.54 | 0.53 | 15.42 | 3.15 | MUSTER | -GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGLSDSIRSCCLIP-PHSGAYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDWGAPNAKVGSLRRVMD | |||||||||||||
6 | 2m3cA | 0.49 | 0.48 | 14.03 | 2.84 | HHsearch | MGKIIFYEDRNFGGRYHECMSDCADLHSYFNRCHSIRVESGCFMVYDRTNFMGRQYFLRRGEYPDYMRTMGMNDCVRSCRMIPL-HHGSFKMRLYEHSDMGGRMMELMDDCPNLMDRFNMSDFHSCHVMDGHWLVYEQPNYTGRQFYLRPGEYRSYNDWGGVTSRMGSIRRITD | |||||||||||||
7 | 1zwmA | 0.65 | 0.64 | 18.37 | 2.50 | FFAS-3D | -GKISFYEDRNFQGRRYDCDCDCADFRSYLSRCNSIRVEGGTWAVYERPNFSGHMYILPQGEYPEYQRWMGLNDRLGSCRAVHLSSGGQAKIQVFEKGDFNGQMYETTEDCPSIMEQFHLREIHSCKVVEGTWIFYELPNYRGRQYLLDKKEYRKPVDWGAASPAIQSFRRIVE | |||||||||||||
8 | 5vh1A | 0.64 | 0.64 | 18.22 | 4.14 | CNFpred | GPKVTFYEDKNFLGRRYECDADCPDFHTYLNRCNSIRVEGGTWVAYERPNYSGNMYVLRRGEYPDYHHWMGLNDRLGSCKAVHIPSGAQGHIQVFEKGDFGGQMFEATEDCPSILEECHFREVHACRVLEGIWVFYEHPNYRGRQYLLPKGEYRQPVEWGAVTPAVQSFRSIAE | |||||||||||||
9 | 2jdfA | 0.48 | 0.47 | 13.55 | 1.17 | DEthreader | -GKITFYEDRAFQGRSYECTTCPNLQPYFSR-CNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGLS-DSIRSCCLIPPHSGAYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNRGR-QYLLRPGEYRRFLDWGAPNAKVGSLRRVMD | |||||||||||||
10 | 2m3cA | 0.45 | 0.44 | 12.93 | 1.17 | DEthreader | MGKIIFYEDRNFGGRYHECMSDCADLHSYFNRCHSIRVESGCFMVYDRTNFMGRQYFLRRGEYPDYMRTMGMNDCVRSCRMIPLHH-GSFKMRLYEHSDMGGRMMELMDDCPNLMDRFNMSDFHSCHVMDGHWLVYEQPNTGRQFYLRPGE-Y-RSYNDGGVTSRMGSIRRITL | |||||||||||||
|
|
References: | |
1. | Wei Zheng, Qiqige Wuyun, Yang Li, Quancheng Liu, Xiaogen Zhou, Yiheng Zhu, P. Lydia Freddolino, Yang Zhang. Integrating deep learning potentials with I-TASSER for single- and multi-domain protein structure prediction. Submitted. 2023. |