>Q5XTN5_DANRE (174 residues) MNKIVFYEDRNFQGRSYETSSDCPELSQFLSRCSSCRVENGCFMIYDRSNFMGNQFFLRR GEYADCKRMGLSDSIRSCRTIPQHRGAFRMRIYEKENFGGMSYELTEDCESTADRFRLSE MRSCHVMDGHWLLYEQPHYRSRMLYLRPGEYRSFRDMGISFRFSSLRRIMEPCN |
Sequence |
20 40 60 80 100 120 140 160 | | | | | | | | MNKIVFYEDRNFQGRSYETSSDCPELSQFLSRCSSCRVENGCFMIYDRSNFMGNQFFLRRGEYADCKRMGLSDSIRSCRTIPQHRGAFRMRIYEKENFGGMSYELTEDCESTADRFRLSEMRSCHVMDGHWLLYEQPHYRSRMLYLRPGEYRSFRDMGISFRFSSLRRIMEPCN |
Prediction | CCSSSSSSCCCCSSSSSSSCCCCCCCCCCCCCCSSSSSSCCCSSSSSCCCCCCSSSSSCCCCCCCHHHCCCCCCSCCCCCCCCCCCCCSSSSSSCCCCCCCSSSSCCCCCCHHHHCCCCCCSSSSSCCCCSSSSCCCCCCSSSSSSCCCCCCCHHHHCCCCCSSSSSSCCCCCC |
Confidence | 985999817998023799768864401104542079994772899837998214898779878864446999813211224777887459999558988517997268976787267897218998268379971899953689973786699788189982025786345679 |
H:Helix; S:Strand; C:Coil | |
Sequence |
20 40 60 80 100 120 140 160 | | | | | | | | MNKIVFYEDRNFQGRSYETSSDCPELSQFLSRCSSCRVENGCFMIYDRSNFMGNQFFLRRGEYADCKRMGLSDSIRSCRTIPQHRGAFRMRIYEKENFGGMSYELTEDCESTADRFRLSEMRSCHVMDGHWLLYEQPHYRSRMLYLRPGEYRSFRDMGISFRFSSLRRIMEPCN |
Prediction | 742010003660402321034313403521530100303513000002371412212044241232432323120212332454444230201137626333230343132024323343020020363200002336041210103425153154222333010022234518 |
Values range from 0 (buried residue) to 8 (highly exposed residue) | |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | 20 40 60 80 100 120 140 160 | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SS Seq | CCSSSSSSCCCCSSSSSSSCCCCCCCCCCCCCCSSSSSSCCCSSSSSCCCCCCSSSSSCCCCCCCHHHCCCCCCSCCCCCCCCCCCCCSSSSSSCCCCCCCSSSSCCCCCCHHHHCCCCCCSSSSSCCCCSSSSCCCCCCSSSSSSCCCCCCCHHHHCCCCCSSSSSSCCCCCC MNKIVFYEDRNFQGRSYETSSDCPELSQFLSRCSSCRVENGCFMIYDRSNFMGNQFFLRRGEYADCKRMGLSDSIRSCRTIPQHRGAFRMRIYEKENFGGMSYELTEDCESTADRFRLSEMRSCHVMDGHWLLYEQPHYRSRMLYLRPGEYRSFRDMGISFRFSSLRRIMEPCN | |||||||||||||||||||
1 | 2jdfA | 0.55 | 0.55 | 15.89 | 3.79 | SPARKS-K | -GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGSDSIRSCCLIPPHSGAYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDWGANAKVGSLRRVMDLYL | |||||||||||||
2 | 1blbC | 0.30 | 0.30 | 9.22 | 0.89 | CEthreader | NPKIIIFEQENFQGHSHELNGPCPNLKETVEKAGSVLVQAGPWVGYEQANCKGEQFVFEKGEYPRWDSWTRTDSLSSLRPIKVDSQEHKITLYENPNFTGKKMEVIDDVPSFHAHGYQEKVSSVRVQSGTWVGYQYPGYRGLQYLLEKGDYKDSGDFGAPQQVQSVRRIRDMQW | |||||||||||||
3 | 2jdfA | 0.56 | 0.56 | 16.05 | 3.20 | MUSTER | -GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMLSDSIRSCCLIPPHSGAYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDWGANAKVGSLRRVMDLYL | |||||||||||||
4 | 2m3cA | 0.59 | 0.58 | 16.66 | 2.85 | HHsearch | MGKIIFYEDRNFGGRYHECMSDCADLHSYFNRCHSIRVESGCFMVYDRTNFMGRQYFLRRGEYPDYMRTGMNDCVRSCRMIPLHHGSFKMRLYEHSDMGGRMMELMDDCPNLMDRFNMSDFHSCHVMDGHWLVYEQPNYTGRQFYLRPGEYRSYNDWGGTSRMGSIRRITDL-- | |||||||||||||
5 | 2jdfA | 0.56 | 0.55 | 15.88 | 2.37 | FFAS-3D | -GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGSDSIRSCCLIPPHSGAYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDWGANAKVGSLRRVMDL-- | |||||||||||||
6 | 2v2uA | 0.56 | 0.55 | 15.72 | 3.91 | CNFpred | -GKITFFEDRSFQGRCYECSSDCPNLQTYFSRCNSVRVDSGCWMLYERPNYQGHQYFLRRGEYPDYQQWMGSDSIRSCRLIPH-AGSHRMRLYEKEDHKGVMMELSEDCSCIQDRFHLSEVRSLQVLEGCWVLYEMPNYRGRQYLLRPQEYRRFQDWGSDAKAGSLRRVVDLY- | |||||||||||||
7 | 2m3cA | 0.58 | 0.57 | 16.51 | 3.69 | SPARKS-K | MGKIIFYEDRNFGGRYHECMSDCADLHSYFNRCHSIRVESGCFMVYDRTNFMGRQYFLRRGEYPDYMRTMMNDCVRSCRMIPLHHGSFKMRLYEHSDMGGRMMELMDDCPNLMDRFNMSDFHSCHVMDGHWLVYEQPNYTGRQFYLRPGEYRSYNDWGGTSRMGSIRRITDL-- | |||||||||||||
8 | 3qk3A | 0.31 | 0.30 | 9.05 | 0.89 | CEthreader | SYKVILYELENFQGKRCELSAECPSLT-LLEKVGSIQVESGPWLAFESRAFRGEQFVLEKGDYPRWDAWSDSDSLLSLRPLNIDSPHHKLHLFENPAFSGRKMEIVDDVPSLWAHGFQDRVASVRAINGTWVGYEFPGYRGRQYVFERGEYRHWNEWDAQPQLQSVRRIRD--- | |||||||||||||
9 | 2m3cA | 0.59 | 0.58 | 16.66 | 3.14 | MUSTER | MGKIIFYEDRNFGGRYHECMSDCADLHSYFNRCHSIRVESGCFMVYDRTNFMGRQYFLRRGEYPDYMRTGMNDCVRSCRMIPLHHGSFKMRLYEHSDMGGRMMELMDDCPNLMDRFNMSDFHSCHVMDGHWLVYEQPNYTGRQFYLRPGEYRSYNDWGGTSRMGSIRRITDL-- | |||||||||||||
10 | 2jdfA | 0.57 | 0.56 | 16.20 | 2.83 | HHsearch | -GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWGLSDSIRSCCLIPPHSGAYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDWGANAKVGSLRRVMDLYL | |||||||||||||
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References: | |
1. | Wei Zheng, Qiqige Wuyun, Yang Li, Quancheng Liu, Xiaogen Zhou, Yiheng Zhu, P. Lydia Freddolino, Yang Zhang. Integrating deep learning potentials with I-TASSER for single- and multi-domain protein structure prediction. Submitted. 2023. |