>A0A8N7TEM3_DANRE (174 residues) MGRIIFYEDRNFQGRSYECMGDCADMSSYMSRCHSCRIESGCWMMYDRPNYMGNQYFFRR GDYADYMAMFGMNDCIRSCRMIPMHRGSFRMRIYERENFGGQMHEMLDDCDNIQDRYRMS HCQSCHVMDGHWLMYEQARYRGKMMYFRPGEYRNFSNMGGTRFMSMRRINDSYF |
Sequence |
20 40 60 80 100 120 140 160 | | | | | | | | MGRIIFYEDRNFQGRSYECMGDCADMSSYMSRCHSCRIESGCWMMYDRPNYMGNQYFFRRGDYADYMAMFGMNDCIRSCRMIPMHRGSFRMRIYERENFGGQMHEMLDDCDNIQDRYRMSHCQSCHVMDGHWLMYEQARYRGKMMYFRPGEYRNFSNMGGTRFMSMRRINDSYF |
Prediction | CCSSSSSSCCCCCSSSSSSCCCCCCCCCCCCCCCSSSSSCCSSSSSSCCCCSSSSSSSCCCCCCCHHHHCCCCCCSSSCSCCCCCCCCCSSSSSSCCCCCCCSSSSCCCCCCHHHCCCCCCCCSSSSCCCCSSSSSCCCCCSSSSSSCCCCCCCHHHHCCCCSSSSSSCCCCCC |
Confidence | 985999947998123799768988643556731069993730899957998025898669858776773688882332100025688854999954898851799847896578726788730799827928998279983468997578549978808984356887032459 |
H:Helix; S:Strand; C:Coil | |
Sequence |
20 40 60 80 100 120 140 160 | | | | | | | | MGRIIFYEDRNFQGRSYECMGDCADMSSYMSRCHSCRIESGCWMMYDRPNYMGNQYFFRRGDYADYMAMFGMNDCIRSCRMIPMHRGSFRMRIYERENFGGQMHEMLDDCDNIQDRYRMSHCQSCHVMDGHWLMYEQARYRGKMMYFRPGEYRNFSNMGGTRFMSMRRINDSYF |
Prediction | 742000003650402322134314404531530200304623000002271402101044141332441243422012132244454423020123662634323034312102332334302002035420000224614020010343514314514243010012246438 |
Values range from 0 (buried residue) to 8 (highly exposed residue) | |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | 20 40 60 80 100 120 140 160 | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SS Seq | CCSSSSSSCCCCCSSSSSSCCCCCCCCCCCCCCCSSSSSCCSSSSSSCCCCSSSSSSSCCCCCCCHHHHCCCCCCSSSCSCCCCCCCCCSSSSSSCCCCCCCSSSSCCCCCCHHHCCCCCCCCSSSSCCCCSSSSSCCCCCSSSSSSCCCCCCCHHHHCCCCSSSSSSCCCCCC MGRIIFYEDRNFQGRSYECMGDCADMSSYMSRCHSCRIESGCWMMYDRPNYMGNQYFFRRGDYADYMAMFGMNDCIRSCRMIPMHRGSFRMRIYERENFGGQMHEMLDDCDNIQDRYRMSHCQSCHVMDGHWLMYEQARYRGKMMYFRPGEYRNFSNMGGTRFMSMRRINDSYF | |||||||||||||||||||
1 | 1zwmA | 0.35 | 0.34 | 10.12 | 1.33 | DEthreader | GGKISFYEDRNFQGRRYDCDCDCADFRSYLSRCNSIRVEGGTWAVY-ERFSGHMYILPQG--EYPEYQRWMGLNDRLSCRAVHLSSGQAKIQVFEKGDFNGQMYETTEDCPSIMEQFHLREIHSCKVVEGTWIFYELPNYRGRQYLLDKKEYRKPVDAASPAIQSFRRIV-E-- | |||||||||||||
2 | 1zwmA | 0.39 | 0.38 | 11.22 | 1.33 | DEthreader | GGKISFYEDRNFQGRRYDCDCDCADFRSYLSRCNSIRVEGGTWAVYERPNFSGHMYILPQGEYPEYQRWGLND-RLGSCRAVHLSSGQAKIQVFEKGDFNGQMYETTEDCPSIMEQFHLREIHSCKVVEGTWIFYELPNYRGRQYLLDKKEYRKPVDAASPAIQSFRR-IVE-- | |||||||||||||
3 | 2jdfA | 0.52 | 0.51 | 14.80 | 3.83 | SPARKS-K | -GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGLSDSIRSCCLIPPHSGAYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRWGA-PNAKVGSLRRVMDLYL | |||||||||||||
4 | 1blbC | 0.28 | 0.28 | 8.45 | 0.89 | CEthreader | NPKIIIFEQENFQGHSHELNGPCPNLKETVEKAGSVLVQAGPWVGYEQANCKGEQFVFEKGEYPRWDSWTSSTDSLSSLRPIKVDSQEHKITLYENPNFTGKKMEVIDDVPSFHAHGYQEKVSSVRVQSGTWVGYQYPGYRGLQYLLEKGDYKDSGDAPQPQVQSVRRIRDMQW | |||||||||||||
5 | 2jdfA | 0.53 | 0.52 | 15.11 | 3.22 | MUSTER | -GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGLSDSIRSCCLIPPHSGAYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDWGNAKVGSLRRVMDLYL | |||||||||||||
6 | 2m3cA | 0.63 | 0.62 | 17.74 | 2.87 | HHsearch | MGKIIFYEDRNFGGRYHECMSDCADLHSYFNRCHSIRVESGCFMVYDRTNFMGRQYFLRRGEYPDYMRTMGMNDCVRSCRMIPLHHGSFKMRLYEHSDMGGRMMELMDDCPNLMDRFNMSDFHSCHVMDGHWLVYEQPNYTGRQFYLRPGEYRSWGGV-TSRMGSIRRITDL-- | |||||||||||||
7 | 2m3cA | 0.64 | 0.63 | 18.06 | 2.46 | FFAS-3D | MGKIIFYEDRNFGGRYHECMSDCADLHSYFNRCHSIRVESGCFMVYDRTNFMGRQYFLRRGEYPDYMRTMGMNDCVRSCRMIPLHHGSFKMRLYEHSDMGGRMMELMDDCPNLMDRFNMSDFHSCHVMDGHWLVYEQPNYTGRQFYLRPGEYRSYNDWGGSRMGSIRRITDL-- | |||||||||||||
8 | 2v2uA | 0.52 | 0.51 | 14.79 | 3.77 | CNFpred | -GKITFFEDRSFQGRCYECSSDCPNLQTYFSRCNSVRVDSGCWMLYERPNYQGHQYFLRRGEYPDYQQWMGFSDSIRSCRLIPH-AGSHRMRLYEKEDHKGVMMELSEDCSCIQDRFHLSEVRSLQVLEGCWVLYEMPNYRGRQYLLRPQEYRRFQDWGSAKAGSLRRVVDLY- | |||||||||||||
9 | 2jdfA | 0.41 | 0.40 | 11.68 | 1.17 | DEthreader | -GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIY-ERPQGHQYFLRRG--EYPDYQQWMGLSDSIRCCLIPPHSGAYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNRGR-QYLLRPGEYRRFLDAPNAKVGSLRRVMDLYL | |||||||||||||
10 | 2jdfA | 0.49 | 0.48 | 13.86 | 1.17 | DEthreader | -GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWGLSD-SIRSCCLIPPHSGAYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNRGRQYLLRP-GEYRRFLDAPNAKVGSLRRVMDLY- | |||||||||||||
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References: | |
1. | Wei Zheng, Qiqige Wuyun, Yang Li, Quancheng Liu, Xiaogen Zhou, Yiheng Zhu, P. Lydia Freddolino, Yang Zhang. Integrating deep learning potentials with I-TASSER for single- and multi-domain protein structure prediction. Submitted. 2023. |