>Q5XTN6_DANRE (178 residues) MGKVIFYEDRNFQGRNYECMSDCSDISSYLGRVGSIRVESGCFIVYERNGFMGNQFFLRR GEYHDIQRMMSMGMMFDTIRSCRMIPSYRGSFRMRIYERDNFGGQMYELMDDCESIQERY RMSDCQSCHVMDGHWLMFEQPHYRGRMIYFRPGEYRSFRDMGFSNMRFISMRRITDMC |
Sequence |
20 40 60 80 100 120 140 160 | | | | | | | | MGKVIFYEDRNFQGRNYECMSDCSDISSYLGRVGSIRVESGCFIVYERNGFMGNQFFLRRGEYHDIQRMMSMGMMFDTIRSCRMIPSYRGSFRMRIYERDNFGGQMYELMDDCESIQERYRMSDCQSCHVMDGHWLMFEQPHYRGRMIYFRPGEYRSFRDMGFSNMRFISMRRITDMC |
Prediction | CCSSSSSSCCCCCSSSSSSCCCCCCCHHHCCCCCSSSSSCCCSSSSSCCCCCCSSSSSCCCCCCCHHHHCCCCCCCCCSSSSSSCCCCCCCCSSSSSSCCCCCCCSSSSCCCCCCHHHCCCCCCCCSSSSCCCCSSSSCCCCCCSSSSSSCCCCCCCHHHHCCCCCCSSSSSSCCCCC |
Confidence | 9779998379981237994688876111117301299926127998389997348997588788857733689988833464202577887369999579998506998257987688167887437998269488970799833689975776799788278998145677633579 |
H:Helix; S:Strand; C:Coil | |
Sequence |
20 40 60 80 100 120 140 160 | | | | | | | | MGKVIFYEDRNFQGRNYECMSDCSDISSYLGRVGSIRVESGCFIVYERNGFMGNQFFLRRGEYHDIQRMMSMGMMFDTIRSCRMIPSYRGSFRMRIYERDNFGGQMYELMDDCESIQERYRMSDCQSCHVMDGHWLMFEQPHYRGRMIYFRPGEYRSFRDMGFSNMRFISMRRITDMC |
Prediction | 7320100036605123221444134035205301002035431000133614021000341414324302442433210201322434444120101137615333220343142046333344020020351320012245140210103425143254122533301002313768 |
Values range from 0 (buried residue) to 8 (highly exposed residue) | |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | 20 40 60 80 100 120 140 160 | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SS Seq | CCSSSSSSCCCCCSSSSSSCCCCCCCHHHCCCCCSSSSSCCCSSSSSCCCCCCSSSSSCCCCCCCHHHHCCCCCCCCCSSSSSSCCCCCCCCSSSSSSCCCCCCCSSSSCCCCCCHHHCCCCCCCCSSSSCCCCSSSSCCCCCCSSSSSSCCCCCCCHHHHCCCCCCSSSSSSCCCCC MGKVIFYEDRNFQGRNYECMSDCSDISSYLGRVGSIRVESGCFIVYERNGFMGNQFFLRRGEYHDIQRMMSMGMMFDTIRSCRMIPSYRGSFRMRIYERDNFGGQMYELMDDCESIQERYRMSDCQSCHVMDGHWLMFEQPHYRGRMIYFRPGEYRSFRDMGFSNMRFISMRRITDMC | |||||||||||||||||||
1 | 1zwmA | 0.44 | 0.42 | 12.34 | 1.33 | DEthreader | GGKISFYEDRNFQGRRYDCDCDCADFRSYLSRCNSIRVEGGTWAVYERPFSGHMY-ILPQGEYPEYQRW--M-GLNDRLGSCRAVHLSSGQAKIQVFEKGDFNGQMYETTEDCPSIMEQFHLREIHSCKVVEGTWIFYELPNYRGRQYLLDKKEYRKPVDWGAASPAIQSFRRIV-E- | |||||||||||||
2 | 1zwmA | 0.42 | 0.41 | 12.04 | 1.17 | DEthreader | GGKISFYEDRNFQGRRYDCDCDCADFRSYLSRCNSIRVEGGTWAVYERPNFSGHMYILPQGEYPEY-QRWMGLN-D-RLGSCRAVHLSSGQAKIQVFEKGDFNGQMYETTEDCPSIMEQFHLREIHSCKVVEGTWIFYELPNYRGRQYLLDKKEYRKPVDGAASPA-IQSFRRIV--E | |||||||||||||
3 | 2jdfA | 0.52 | 0.51 | 14.63 | 3.73 | SPARKS-K | -GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGL---SDSIRSCCLIPPHSGAYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDWGAPNAKVGSLRRVMDLY | |||||||||||||
4 | 1blbC | 0.30 | 0.30 | 9.03 | 0.90 | CEthreader | NPKIIIFEQENFQGHSHELNGPCPNLKETVEKAGSVLVQAGPWVGYEQANCKGEQFVFEKGEYPRWDSWTS-SRRTDSLSSLRPIKVDSQEHKITLYENPNFTGKKMEVIDDVPSFHAHGYQEKVSSVRVQSGTWVGYQYPGYRGLQYLLEKGDYKDSGDFGAPQPQVQSVRRIRDMQ | |||||||||||||
5 | 2jdfA | 0.52 | 0.51 | 14.63 | 3.27 | MUSTER | -GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGL---SDSIRSCCLIPPHSGAYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDWGAPNAKVGSLRRVMDLY | |||||||||||||
6 | 2m3cA | 0.64 | 0.62 | 17.81 | 2.87 | HHsearch | MGKIIFYEDRNFGGRYHECMSDCADLHSYFNRCHSIRVESGCFMVYDRTNFMGRQYFLRRGEYPDYMRTMGM---NDCVRSCRMIPLHHGSFKMRLYEHSDMGGRMMELMDDCPNLMDRFNMSDFHSCHVMDGHWLVYEQPNYTGRQFYLRPGEYRSYNDWGGVTSRMGSIRRITDL- | |||||||||||||
7 | 2jdfA | 0.50 | 0.49 | 14.17 | 2.46 | FFAS-3D | -GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGLSDSIR---SCCLIPPHSGAYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDWGAPNAKVGSLRRVMDL- | |||||||||||||
8 | 1i5iA | 0.52 | 0.51 | 14.62 | 3.85 | CNFpred | -GKITFYEDRGFQGHCYESSSDCPNLQPYFSRCNSIRVDSGCWMLYERPNYQGHQYFLRRGDYPDYQQWMGF---NDSIRSCRLIPQHTGTFRMRIYERDDFRGQMSEITDDCPSLQDRFHLTEVHSLNVLEGSWVLYEMPSYRGRQYLLRPGEYRRYLDWGAMNAKVGSLRRVMDF- | |||||||||||||
9 | 2jdfA | 0.46 | 0.44 | 12.95 | 1.17 | DEthreader | -GKITFYEDRAFQGRSYECTTDCPNLQPYFSRCNSIRVESGCWMIY-ERPQGHQYFLRR-G-E-YPD-YQQWMGLSDSIRSCCLIPPHSGAYRMKIYDRDELRGQMSELTDDCLSVQDRFHLTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDWGAPNAKVGSLRRVMDLY | |||||||||||||
10 | 2m3cA | 0.61 | 0.60 | 17.05 | 1.17 | DEthreader | MGKIIFYEDRNFGGRYHECMSDCADLHSYFNRCHSIRVESGCFMVYDRTNFMGRQYFLRRGEY-P--DYMRTGMND-CVRSCRMIPLHHGSFKMRLYEHSDMGGRMMELMDDCPNLMDRFNMSDFHSCHVMDGHWLVYEQPNYTGRQFYLRPGEYRSYNDWGGVTSRMGSIRR-ITDL | |||||||||||||
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References: | |
1. | Wei Zheng, Qiqige Wuyun, Yang Li, Quancheng Liu, Xiaogen Zhou, Yiheng Zhu, P. Lydia Freddolino, Yang Zhang. Integrating deep learning potentials with I-TASSER for single- and multi-domain protein structure prediction. Submitted. 2023. |