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Article

Synthesis and Antimicrobial Activity of Some New Pyrimidinone and Oxazinone Derivatives Fused with Thiophene Rings Using 2-Chloro-6-ethoxy-4-acetylpyridine as Starting Material

by
Aisha S. M. Hossan
1,*,
Hanaa M. A. Abu-Melha
1,
Mohamed A. Al-Omar
2,3 and
Abd El-Galil E. Amr
3,4
1
Chemistry Department, Girls College of Science, King Khalid University, Abha 9004, Saudi Arabia
2
Pharmaceutical Chemistry Department, College of Pharmacy, King Saud University, Riyadh 11451, Saudi Arabia
3
Pharmaceutical Chemistry Department, Drug Exploration & Development Chair, College of Pharmacy, King Saud University, Riyadh 11451, Saudi Arabia
4
Applied Organic Chemistry Department, National Research Center, Cairo, Dokki 12622, Egypt
*
Author to whom correspondence should be addressed.
Molecules 2012, 17(11), 13642-13655; https://doi.org/10.3390/molecules171113642
Submission received: 19 September 2012 / Revised: 9 November 2012 / Accepted: 12 November 2012 / Published: 19 November 2012

Abstract

:
A series of pyridines, pyrimidinones, oxazinones and their derivatives were synthesized as antimicrobial agents using citrazinic acid (2,6-dihydroxyisonicotinic acid) as a starting material. α,β-Unsaturated ketones 3ac were condensed with cyanothio-acetamide in the presence of ammonium acetate to give 2-cyanopyridinethiones 4ac, which were reacted with ethyl chloroacetate to yield the corresponding cyano esters 5ac. The esters 5ac were cyclized by action of sodium methoxide to aminoesters 6ac, which were aminolyzed with ammonia to corresponding aminoamide derivatives 7a-c. Also, the esters 6ac were hydrolyzed with NaOH to the corresponding sodium salt 8ac, which were treated with acetic anhydride to afford 2-methyloxazinones 9ac. The latter compounds were treated with ammonium acetate to afford 2-methylpyrimidinones 10ac, followed by methylation with methyl iodide to yield 2,3-dimethyl-pyrimidinones 11ac. The antimicrobial screening showed that many of these compounds have good antibacterial and antifungal activities comparable to streptomycin and fusidic acid used as reference drugs.

1. Introduction

In previous work, we have found that certain substituted pyridines and their derivatives showed antimicrobial, analgesic, anticonvulsant, antiparkinsonian [1,2,3,4] and antitumor activities [5,6,7]. In addition, the biological and analgesic activities of many heterocyclic compounds containing a sulfur atom have been reviewed [8,9,10]. On the other hand, thienopyrimidine and thioxopyrimidine derivatives have promising biological [11,12] and anticancer activity [13]. Recently, some new oxazinones, thienopyrimidinones and their derivatives have been synthesized as anti-inflammatory, antimicrobial and anti-HIV agents [14,15,16,17,18]. In view of these observations and in continuation of our previous work in pyridine chemistry, we have now synthesized some novel heterocyclic compounds containing the thieno[2,3-b]pyridine moiety fused with a pyridine, oxazinone, or pyrimidinone, nucleus and tested their antimicrobial activities.

2. Results and Discussion

2.1. Synthesis

The starting materials 3ac (Table 1) were prepared from 2,6-dihydroxyisonicotinic acid (1) via the corresponding 2-chloro-6-ethoxy-4-acetylpyridine 2 according to literature methods [1,19]. Acryloyl derivatives 3ac were condensed with 2-cyanothioacetamide in the presence of ammonium acetate to give the corresponding cyanopyridine thione derivatives 4ac (Table 1). Treatment of 4ac with ethyl chloroacetate in the presence of anhydrous K2CO3 gave the corresponding ethyl ester derivative 5ac (Table 1), which were cyclized by sodium methoxide in methanol to give the amino ester derivatives 6ac (Table 1). Aminolysis of compounds 6ac by action of ammonia gas afforded the corresponding aminoamide derivatives 7ac (Scheme 1, Table 1). The IR spectra of 6ac showed the absence of ν (C≡N) for 5ac and the presence of broad band corresponding to ν (NH2). Also, the IR spectra of 7ac showed the absence of ν(C=O, ester) for 6ac and the presence of a broad band corresponding to ν(NH2).
Compounds 6ac were hydrolyzed by refluxing with ethanolic sodium hydroxide (NaOH) to the corresponding sodium salts 8ac, which was treated in situ with refluxing acetic anhydride to give the corresponding oxazinone derivatives 9ac (Table 2). Reaction of 9ac with ammonium acetate in refluxing acetic acid afforded the corresponding pyrimidinone derivatives 10ac (Table 2), which were treated with methyl iodide in N,N-dimethylformamide in the presence of anhydrous K2CO3 to yield the corresponding 3-methyl-pyrimidinone derivatives 11ac (Scheme 2, Table 2).

2.2. Antimicrobial Activity

The antimicrobial activities of some of the synthesized compounds were determined by the agar diffusion method as recommended by the National Committee for Clinical Laboratory Standards (NCCLS) [20]. The compounds were evaluated for antimicrobial activity against bacteria, viz. Streptomyces sp., Bacillus subtilis, Streptococcus lactis, Escherichia coli, and Pseudomonas sp. and antifungal activity against various fungi, viz. Aspergillus niger, Penicillium sp and yeast Candida albican and Rhodotorula ingeniosa.
The concentrations of the tested compounds (10 µg/mL) were used according to a modified Kirby-Bauer’s disk diffusion method. The sterile discs were impregnated with 10 µg/disc of the tested compound. Each tested compound was performed in triplicate. The solvent DMSO was used as a negative control and streptomycin/fusidic acid were used as standard calculated average diameters (for triplicates) of the zone of inhibition (in mm) for tested samples with that produced by the standard drugs. Four of the synthesized compounds 5a, 7b, 9b and 10b exhibited potent antibacterial and antifungal bioactivity compared with the standard drug used. The other tested compounds were found to exhibit a moderate to low antibacterial activity (Table 3).
On the other hand, when different concentrations of compound 9a were used, it was exhibited a moderate antibacterial activity, but it exhibited very good antibacterial activity at higher concentrations (3× and 4×) (Table 4), while different concentrations of compounds 5a and 10a exhibited very good antifungal activities (2× and 3×) (Table 5).

3. Experimental

3.1. Chemistry

Melting points were measured using Electrothermal 9100 digital melting point apparatus (Electrothermal, Essex, UK) and are uncorrected. IR spectra were recorded on a Perkin-Elmer 1600 FTIR (Perkin-Elmer, Downers Grove, IL, USA) in KBr discs. 1H- and 13C-NMR spectra were measured on a Jeol 5000 MHz spectrometer (Jeol, Tokyo, Japan) in DMSO-d6, and chemical shifts were recorded in δ ppm relative to the internal standard TMS. The Mass spectra were run at 70 eV with a Finnigan SSQ 7000 spectrometer (Madison, WI, USA) using EI and the values of m/z are indicated in Dalton. Elemental analyses were performed on a Perkin-Elmer 2400 analyzer (Perkin-Elmer) and were found within ±0.4% of the theoretical values. All reactions were followed by TLC (Silica gel, Aluminum Sheets 60 F254, Merck, Darmstadt, Germany). Starting material 2 was prepared from citrazinic acid (1) according to published procedures [1,19]. Antimicrobial screening was carried out in Department of Microbial Chemistry, National Research Center, Cairo, Egypt.
1-(2-Chloro-6-ethoxypyridin-4-yl)-3-(substituted phenyl)prop-2-en-1-ones 3ac. A mixture of 2-chloro-6-ethoxy-4-acetylpyridine (2) [19] (1 mmol) and an aromatic aldehyde, namely, 4-flouro-, 4-chloro- or 2,4-dichlorobenzaldehyde (1 mmol) in absolute ethanol (30 mL) was refluxed in the presence of a mixture of TEA/DEA (3 mL, 1:1 v:v) for 6 h. The reaction mixture was concentrated under reduced pressure, the obtained solid was filtered off, washed with ether, dried and crystallized from the proper solvents to afford the corresponding acryloyl derivatives 3ac, respectively.
1-(2-Chloro-6-ethoxypyridin-4-yl)-3-(4-fluorophenyl)prop-2-en-1-one (3a). IR (KBr, cm−1): ν 1679 (C=O), 1607 (C=C); 1H-NMR: δ 1.32 (t, 3H, CH3, J = 6.95 Hz), 3.81 (q, 2H, CH2, J = 6.95 Hz), 6.65 (d, 1H, CH-olefinic-H, J = 14.60 Hz), 6.98 (d, 1H, CH-olefinic-H, J = 14.60 Hz), 7.28–7.96 (m, 6H, 4 Ph-H + 2 pyr-H); 13C-NMR: 13.68, 64.32, 104.95, 109.56, 114.72, 121.30, 129.86, 130.05, 144.65, 145.84, 146.50, 160.95, 164.96, 186.50; MS, m/z (%): 306 (M+, 15), 184 (100); Elemental analysis for C16H13ClFNO2 (305.73): calcd.: C, 62.86; H, 4.29; Cl, 11.60; N, 4.58. found: C, 62.80; H, 4.26; Cl, 11.55; N, 4.52.
1-(2-Chloro-6-ethoxypyridin-4-yl)-3-(4-chlorophenyl)prop-2-en-1-one (3b). IR (KBr, cm−1): ν 1682 (C=O), 1610 (C=C); 1H-NMR: δ 1.33 (t, 3H, CH3, J = 6.95 Hz), 3.92 (q, 2H, CH2, J = 6.95 Hz), 6.58 (d, 1H, CH-olefinic-H, J = 14.60 Hz), 7.05 (d, 1H, CH-olefinic-H, J = 14.60 Hz), 7.12–7.88 (m, 6H, 4 Ph-H + 2 pyr-H); 13C-NMR: 13.86, 64.26, 105.78, 109.62, 121.12, 126.86, 128.25, 132.85, 132.96, 144.68, 145.78, 146.65, 164.84, 186.86; MS, m/z (%): 322 (M+, 8), 165 (100); Elemental analysis for C16H13Cl2NO2 (322.18): calcd.: C, 59.65; H, 4.07; Cl, 22.01; N, 4.35. found: C, 59.60; H, 4.00; Cl, 21.96; N, 4.30.
1-(2-Chloro-6-ethoxypyridin-4-yl)-3-(2,4-dichlorophenyl)prop-2-en-1-one (3c). IR (KBr, cm−1): ν 1678 (C=O), 1612 (C=C); 1H-NMR: δ 1.28 (t, 3H, CH3, J = 6.95 Hz), 3.86 (q, 2H, CH2, J = 6.95 Hz), 6.46 (d, 1H, CH-olefinic-H, J = 14.60 Hz), 7.10 (d, 1H, CH-olefinic-H, J = 14.60 Hz), 7.25–7.76 (m, 5H, 3 Ph-H + 2 pyr-H); 13C-NMR: 13.92, 64.30, 105.96, 109.46, 121.21, 125.69, 128.78, 129.56, 130.85, 132.05, 133.65, 144.86, 145.88, 146.54, 164.78, 187.05; MS, m/z (%): 356 [M+,10], 199 [100, base peak]; Elemental analysis for C16H12Cl3NO2 (356.63): calcd.: C, 53.89; H, 3.39; Cl, 29.82; N, 3.93. found: C, 53.83; H, 3.34; Cl, 29.80; N, 3.88.
6-(2-Chloro-6-ethoxypyridin-4-yl)-4-(substituted phenyl)-1,2-dihydro-2-thioxopyridine-3-carbonitriles 4ac. A mixture of 3ac (1 mmol), 2-cyanothioacetamide (0.10 g, 1 mmol) and ammonium acetate (0.6 g, 8 mmol) in absolute ethanol (30 mL) was refluxed for 5 h. After cooling, the formed product was collected by filtration, washed with ethanol, dried and crystallized from the proper solvents to give the corresponding thioxopyridine derivatives 4ac, respectively.
6-(2-Chloro-6-ethoxypyridin-4-yl)-4-(4-fluorophenyl)-1,2-dihydro-2-thioxopyridine-3-carbonitrile (4a). IR (KBr, cm−1): ν 3330 (NH), 2210 (CN), 1218 (C=S); 1H-NMR: δ 1.30 (t, 3H, CH3, J = 6.95 Hz), 3.90 (q, 2H, CH2, J = 6.95 Hz), 6.95–7.78 (m, 6H, 4 Ph-H + 2 pyr-H), 8.46 (s, 1H, pyr-5'-H), 9.24 (s, 1H, NH exchangeable with D2O); 13C-NMR: 13.66, 63.98, 103.66, 103.88, 107.89, 108.55, 114.58, 116.02, 127.50, 128.04, 145.48, 148.60, 160.56, 161.76, 164.65, 167.47, 168.05; MS, m/z (%): 386 [M+,24], 135 [100, base peak]; Elemental analysis for C19H13ClFN3OS (385.84): calcd.: C, 59.14; H, 3.40; Cl, 9.19; N, 10.89; S, 8.31. found: C, 59.10; H, 3.35; Cl, 9.14; N, 10.85; S, 8.28.
6-(2-Chloro-6-ethoxypyridin-4-yl)-4-(4-chlorophenyl)-1,2-dihydro-2-thioxopyridine-3-carbonitrile (4b). IR (KBr, cm−1): ν 3356 (NH), 2215 (CN), 1210 (C=S); 1H-NMR: δ 1.34 (t, 3H, CH3, J = 6.95 Hz), 3.86 (q, 2H, CH2, J = 6.95 Hz), 7.12–7.80 (m, 6H, 4 Ph-H + 2 pyr-H), 8.52 (s, 1H, pyr-5'-H), 9.18 (s, 1H, NH exchangeable with D2O); 13C-NMR: 13.92, 64.12, 103.96, 104.04, 108.14, 108.86, 115.82, 127.66, 128.10, 129.68, 132.67, 145.56, 148.72, 160.77, 164.58, 167.55, 167.86; MS, m/z (%): 402 [M+,32], 211 [100, base peak]; Elemental analysis for C19H13Cl2N3OS (402.29): calcd.: C, 56.73; H, 3.26; Cl, 17.63; N, 10.45; S, 7.97. found: C, 56.68; H, 3.20; Cl, 17.60; N, 10.40; S, 7.92.
6-(2-Chloro-6-ethoxypyridin-4-yl)-4-(2,4-dichlorophenyl)-1,2-dihydro-2-thioxopyridine-3-carbonitrile (4c). ν 3348 (NH), 2218 (CN), 1212 (C=S); 1H-NMR: δ 1.32 (t, 3H, CH3, J = 6.95 Hz), 3.78 (q, 2H, CH2, J = 6.95 Hz), 6.98–7.68 (m, 5H, 3 Ph-H + 2 pyr-H), 8.64 (s, 1H, pyr-5'-H), 9.34 (s, 1H, NH exchangeable with D2O); 13C-NMR: 14.14, 64.18, 103.88, 104.08, 108.22, 108.92, 115.76, 125.98, 128.56, 129.16, 131.86, 132.15, 134.86, 145.64, 148.80, 161.24, 164.32, 167.45, 168.18; MS, m/z (%): 436 [M+,14], 279 [100, base peak]; Elemental analysis for C19H12Cl3N3OS (436.74): calcd.: C, 52.25; H, 2.77; Cl, 24.35; N, 9.62; S, 7.34. found: C, 52.20; H, 2.71; Cl, 24.30; N, 9.57; S, 7.28.
Ethyl 2-(6-(2-chloro-6-ethoxypyridin-4-yl)-3-cyano-4-(substituted phenyl)pyridin-2-ylthio)acetates 5ac. To a mixture of 4ac (1 mmol) and anhydrous K2CO3 (0.18 g, 1 mmol) in N-dimethylformamide (25 mL) was stirred at room temperature for 2 h, ethyl chloroacetate (0.18 g, 1.5 mmol) was added with stirring. The reaction mixture was heated at 60 °C for 2 h and after cooling poured into ice. The solid formed was collected by filtration, washed with water, dried and crystallized from the proper solvents to afford the corresponding pyridinethioacetate derivatives 5ac, respectively.
Ethyl 2-(6-(2-chloro-6-ethoxypyridin-4-yl)-3-cyano-4-(4-fluorophenyl)pyridin-2-ylthio)acetate (5a). IR (KBr, cm−1): ν 2219 (CN), 1735 (C=O, ester); 1H-NMR: δ 1.28, 1.32 (2t, 6H, 2 CH3), 3.68, 3.86 (2q, 4H, 2 CH2), 4.38 (s, 2H, S–CH2), 7.16–7.82 (m, 6H, 4 Ph-H + 2 pyr-H), 8.18 (s, 1H, pyr-5'-H); 13C-NMR: 13.65, 14.05, 32.04, 59.86, 64.08, 101.36, 101.57, 102.85, 115.02, 116.75, 117.02, 128.74, 132.58, 145.65, 151.56, 153.65, 157.08, 162.15, 163.56, 163.94, 168.90; MS, m/z (%): 472 [M+,12], 426 [100, base peak]; Elemental analysis for C23H19ClFN3O3S (471.93): calcd.: C, 58.54; H, 4.06; Cl, 7.51; N, 8.90; 17; S, 6.79. found: C, 58.48; H, 4.00; Cl, 7.45; N, 8.84; 17; S, 6.72.
Ethyl 2-(6-(2-chloro-6-ethoxypyridin-4-yl)-3-cyano-4-(4-chlorophenyl)pyridin-2-ylthio)acetate (5b). IR (KBr, cm−1): ν 2222 (CN), 1732 (C=O, ester); 1H-NMR: δ 1.29, 1.32 (2t, 6H, 2 CH3), 3.56, 3.84 (2q, 4H, 2 CH2), 4.42 (s, 2H, S–CH2), 7.10–7.72 (m, 6H, 4 Ph-H + 2 pyr-H), 8.64 (s, 1H, pyr-5'-H); 13C-NMR: 13.78, 14.15, 32.18, 60.05, 64.18, 101.48, 101.68, 102.74, 116.88, 117.02, 127.54, 128.12, 129.57, 133.45, 145.56, 150.96, 153.64, 157.18, 163.72, 164.05, 170.04; MS, m/z (%): 488 [M+,32], 120 [100, base peak]; Elemental analysis for C23H19Cl2N3O3S (488.38): calcd.: C, 56.56; H, 3.92; Cl, 14.52; N, 8.60; S, 6.57. found: C, 56.50; H, 3.88; Cl, 14.47; N, 8.55; S, 6.51.
Ethyl 2-(6-(2-chloro-6-ethoxypyridin-4-yl)-3-cyano-4-(2,4-dichlorophenyl)pyridin-2-ylthio)acetate (5c). IR (KBr, cm−1): ν 2218 (CN), 1735 (C=O, ester); 1H-NMR: δ 1.26, 1.30 (2t, 6H, 2 CH3), 3.58, 3.78 (2q, 4H, 2 CH2), 4.36 (s, 2H, S–CH2), 7.12–7.65 (m, 5H, 3 Ph-H + 2 pyr-H), 8.56 (s, 1H, pyr-5'-H); 13C-NMR: 13.84, 14.18, 32.18, 59.92, 64.18, 100.98, 101.59, 102.66, 116.82, 117.06, 125.86, 128.48, 129.24, 131.92, 132.24, 134.74, 145.58, 151.08, 153.72, 157.22, 163.88, 164.15, 168.84; MS, m/z (%): 523 [M+,8], 247 [100, base peak]; Elemental analysis for C23H18Cl3N3O3S (522.83): C, 52.84; H, 3.47; Cl, 20.34; N, 8.04; S, 6.13. found: C, 52.78; H, 3.40; Cl, 20.28; N, 8.00; S, 6.07.
Ethyl 3-amino-6-(2-chloro-6-ethoxypyridin-4-yl)-4-(substituted phenyl)thieno[2,3-b]pyridine-2-carboxylates 6ac. A mixture of 5ac (1 mmol) in sodium methoxide solution (20 mL, 2%) was refluxed for 1 h on a water bath at 70 °C with stirring. The reaction mixture was evaporated under reduced pressure, the obtained residue was dissolved in CH2Cl2, washed with H2O, 10 mL 1 N HCl and then with water. The solvent was dried over anhydrous CaCl2, evaporated under reduced pressure, and the obtained product was crystallized to afford from the proper solvents to afford the corresponding ethyl thienopyridinecarboxylates 6ac, respectively.
Ethyl 3-amino-6-(2-chloro-6-ethoxypyridin-4-yl)-4-(4-fluorophenyl)thieno[2,3-b]pyridine-2-carboxyl-ate (6a). IR (KBr, cm−1): ν 3443 (NH2), 1742 (C=O, ester); 1H-NMR: δ 1.30, 1.34 (2t, 6H, 2 CH3), 3.72, 4.06 (2q, 4H, 2 CH2), 4.36 (s, 2H, NH2 exchangeable with D2O), 7.24–7.75 (m, 6H, 4 Ph-H + 2 pyr-H), 8.35 (s, 1H, pyr-5'-H); 13C-NMR: 13.95, 14.16, 60.24, 64.18, 101.58, 103.02, 115.16, 118.35, 120.76, 122.15, 128.66, 132.64, 134.12, 145.72, 149.65, 151.64, 154.57, 155.75, 160.12, 162.65, 164.12; MS, m/z (%): 472 [M+,26], 317 [100, base peak]; Elemental analysis for C23H19ClFN3O3S (471.93): calcd.: C, 58.54; H, 4.06; Cl, 7.51; N, 8.90; S, 6.79. found: C, 58.48; H, 4.00; Cl, 7.45; N, 8.86; S, 6.71.
Ethyl 3-amino-6-(2-chloro-6-ethoxypyridin-4-yl)-4-(4-chlorophenyl)thieno[2,3-b]pyridine-2-carboxyl-ate (6b). IR (KBr, cm−1): ν 3452 (NH2), 1737 (C=O, ester); 1H-NMR: δ 1.26, 1.31 (2t, 6H, 2 CH3), 3.78, 4.10 (2q, 4H, 2 CH2), 4.48 (s, 2H, NH2 exchangeable with D2O), 7.24–7.82 (m, 6H, 4 Ph-H + 2 pyr-H), 8.72 (s, 1H, pyr-5'-H); 13C-NMR: 14.08, 14.25, 60.15, 64.10, 100.42, 103.64, 118.05, 121.16, 122.25, 127.66, 128.44, 133.45, 133.95, 134.50, 146.02, 149.75, 151.18, 154.65, 156.05, 159.64, 164.15; MS, m/z (%): 488 [M+,8], 332 [100, base peak]; Elemental analysis for C23H19Cl2N3O3S (488.38): calcd.: C, 56.56; H, 3.92; Cl, 14.52; N, 8.60; S, 6.57. found: C, 56.50; H, 3.88; Cl, 14.46; N, 8.55; S, 6.50.
Ethyl 3-amino-6-(2-chloro-6-ethoxypyridin-4-yl)-4-(2,4-dichlorophenyl)thieno[2,3-b]pyridine-2-carboxylate (6c). IR (KBr, cm−1): ν 3456 (NH2), 1735 (C=O, ester); 1H-NMR: δ 1.30, 1.33 (2t, 6H, 2 CH3), 3.82, 4.15 (2q, 4H, 2 CH2), 4.56 (s, 2H, NH2 exchangeable with D2O), 7.08–7.68 (m, 5H, 3 Ph-H + 2 pyr-H), 8.62 (s, 1H, pyr-5'-H); 13C-NMR: 14.12, 14.26, 59.98, 64.32, 100.86, 102.72, 118.02, 121.06, 122.00, 126.16, 128.87, 129.36, 132.18, 134.05, 135.44, 136.74, 145.64, 149.85, 151.38, 154.72, 155.43, 160.04, 164.25; MS, m/z (%): 523 [M+,6], 177 [100, base peak]; Elemental analysis for C23H18Cl3N3O3S (522.83): calcd.: C, 52.84; H, 3.47; Cl, 20.34; N, 8.04; S, 6.13. found: C, 52.77; H, 3.42; Cl, 20.30; N, 7.97; S, 6.08.
3-Amino-6-(2-chloro-6-ethoxypyridin-4-yl)-4-(substituted-phenyl)thieno[2,3-b]pyridine-2-carbox-amides 7ac. A current of ammonia gas was passed through a suspension of 6ac (1 mmol) in absolute ethanol (100 mL), at 0 °C till saturation. The reaction mixture was left overnight at −4 °C, evaporated under reduced pressure, the residue obtained was triturated with n-hexane, the formed solid was filtered off, washed with water and crystallized from the proper solvents to give the corresponding thienopyridine carboxamides 7ac, respectively.
3-Amino-6-(2-chloro-6-ethoxypyridin-4-yl)-4-(4-fluorophenyl)thieno[2,3-b]pyridine-2-carboxamide (7a). IR (KBr, cm−1): ν 3460–3380 (NH2), 1675 (C=O, amide); 1H-NMR: δ 1.32 (t, 3H, CH3), 3.85 (q, 2H, CH2), 4.46, 6.85 (2s, 4H, 2 NH2 exchangeable with D2O), 7.12–7.68 (m, 6H, 4 Ph-H + 2 pyr-H), 8.56 (s, 1H, pyr-5'-H); 13C-NMR: 14.06, 64.28, 100.96, 102.22, 115.36, 120.82, 122.45, 128.37, 128.46, 132.84, 137.15, 145.82, 149.65, 152.00, 154.74, 157.75, 161.55, 162.76, 164.30; MS, m/z (%): 443 [M+,8], 332 [100, base peak]; Elemental analysis for C21H16ClFN4O2S (442.89): calcd.: C, 56.95; H, 3.64; Cl, 8.00; N, 12.65; S, 7.24. found: C, 56.90; H, 3.60; Cl, 7.940; N, 12.60; S, 7.19.
3-Amino-6-(2-chloro-6-ethoxypyridin-4-yl)-4-(4-chlorophenyl)thieno[2,3-b]pyridine-2-carboxamide (7b). ν 3456–3378 (NH2), 1672 (C=O, amide); 1H-NMR: δ 1.30 (t, 3H, CH3), 3.82 (q, 2H, CH2), 4.44, 6.88 (2s, 4H, 2 NH2 exchangeable with D2O), 7.32–7.68 (m, 6H, 4 Ph-H + 2 pyr-H), 8.68 (s, 1H, pyr-5'-H); 13C-NMR: 13.68, 64.12, 100.00, 102.04, 121.24, 122.12, 127.85, 128.38, 128.55, 134.05, 135.15, 137.05, 146.12, 149.65, 151.00, 154.36, 156.14, 161.42, 164.04; MS, m/z (%): 459 [M+,25], 287 [100, base peak]; Elemental analysis for C21H16Cl2N4O2S (459.34): calcd.: C, 54.91; H, 3.51; Cl, 15.44; N, 12.20; S, 6.98. found: C, 54.86; H, 3.45; Cl, 15.39; N, 12.16; S, 6.92.
3-Amino-6-(2-chloro-6-ethoxypyridin-4-yl)-4-(2,4-dichlorophenyl)thieno[2,3-b]pyridine-2-carboxamide (7c). IR (KBr, cm−1): ν 3456 (NH2), 1735 (C=O, ester); 1H-NMR: δ 1.28 (t, 3H, CH3), 3.86 (q, 2H, CH2), 4.54, 6.76 (2s, 4H, 2 NH2 exchangeable with D2O), 7.12–7.73 (m, 5H, 3 Ph-H + 2 pyr-H), 8.48 (s, 1H, pyr-5'-H); 13C-NMR: 14.12, 64.33, 101.04, 102.84, 121.32, 122.40, 126.24, 128.65, 128.75, 129.72, 132.32, 135.12, 136.66, 137.22, 145.56, 149.55, 151.22, 154.44, 157.12, 161.26, 164.57; MS, m/z (%): 494 [M+,12], 320 [100, base peak]; Elemental analysis for C21H15Cl3N4O2S (493.79): calcd.: C, 51.08; H, 3.06; Cl, 21.54; N, 11.35; S, 6.49. found: C, 51.00; H, 3.00; Cl, 21.50; N, 11.30; S, 6.44.
7-(2-Chloro-6-ethoxypyridin-4-yl)-9-(substituted-phenyl)-2-methyl-4H-pyrido[3',2':4,5]thieno[3,2-d]-[1,3]-oxazin-4-ones 9ac. A mixture of 6ac (1 mmol) in ethanolic NaOH (100 mL, 5%) was heated under reflux for 4 h. The solvent was evaporated under reduced pressure, the obtained sodium salt 8ac was dissolved in acetic anhydride (100 mL) and refluxed it for 6 h. The reaction mixture was concentrated and allowed to cool, poured onto ice water, the obtained solid was collected by filtration, washed with water, dried and crystallized from the proper solvents to afford the corresponding thienooxazinopyridine derivatives 9ac, respectively.
7-(2-Chloro-6-ethoxypyridin-4-yl)-9-(4-fluorophenyl)-2-methyl-4H-pyrido[3',2':4,5]thieno[3,2-d]-[1,3]oxazin-4-one (9a). IR (KBr, cm−1): ν 1750 (C=O); 1H-NMR: δ 1.30 (t, 3H, CH3), 2.03 (s, 3H, CH3), 3.78 (q, 2H, CH2), 7.04–7.58 (m, 6H, 4 Ph-H + 2 pyr-H), 8.62 (s, 1H, pyr-5'-H); 13C-NMR: 14.10, 18.98, 64.30, 100.86, 101.68, 116.02, 120.80, 125.85, 128.42, 132.78, 134.46, 135.35, 145.72, 150.05, 151.75, 154.90, 155.25 158.62, 162.70, 164.08, 165.25; MS, m/z (%): 468 [M+,6], 217 [100, base peak]; Elemental analysis for C23H15ClFN3O3S (467.89): calcd.: C, 59.04; H, 3.23; Cl, 7.58; N, 8.98; S, 6.85. found: C, 58.96; H, 3.18; Cl, 7.52; N, 8.90; S, 6.80.
7-(2-Chloro-6-ethoxypyridin-4-yl)-9-(4-chlorophenyl)-2-methyl-4H-pyrido[3',2':4,5]thieno[3,2-d]-[1,3]oxazin-4-one (9b). IR (KBr, cm−1): ν 1745 (C=O); 1H-NMR: δ 1.28 (t, 3H, CH3), 2.01 (s, 3H, CH3), 3.89 (q, 2H, CH2), 7.23–7.65 (m, 6H, 4 Ph-H + 2 pyr-H), 8.42 (s, 1H, pyr-5'-H); 13C-NMR: 14.08, 21.60, 64.18, 100.55, 101.45, 121.12, 125.68, 128.12, 128.96, 133.05, 134.58, 135.32, 135.72, 145.92, 149.75, 151.84, 154.86, 155.14, 158.70, 164.12, 165.18; MS, m/z (%): 484 [M+,15], 156 [100, base peak]; Elemental analysis for C23H15Cl2N3O3S (484.35): calcd.: C, 57.03; H, 3.12; Cl, 14.64; N, 8.68; S, 6.62. found: C, 56.95; H, 3.10; Cl, 14.60; N, 8.63; S, 6.58.
7-(2-Chloro-6-ethoxypyridin-4-yl)-9-(2,4-dichlorophenyl)-2-methyl-4H-pyrido[3',2':4,5]thieno[3,2-d]-[1,3]oxazin-4-one (9c). IR (KBr, cm−1): ν 1750 (C=O); 1H-NMR: δ 1.30 (t, 3H, CH3), 2.00 (s, 3H, CH3), 3.82 (q, 2H, CH2), 7.21–7.68 (m, 5H, 3 Ph-H + 2 pyr-H), 8.54 (s, 1H, pyr-5'-H); 13C-NMR: 14.10, 19.18, 64.22, 100.28, 101.15, 121.16, 125.56, 126.46, 128.58, 129.80, 132.44, 134.34, 135.18, 135.45, 136.73, 145.88, 149.72, 151.69, 154.78, 155.18, 159.06, 164.18, 165.32; MS, m/z (%): 519 [M+,8], 320 [100, base peak]; Elemental analysis for C23H14Cl3N3O3S (518.79): calcd.: C, 53.25; H, 2.72; Cl, 20.50; N, 8.10; S, 6.18. found: C, 53.18; H, 2.68; Cl, 20.45; N, 8.00; S, 6.12.
7-(2-Chloro-6-ethoxypyridin-4-yl)-9-(substituted-phenyl)-2-methylpyrido[3',2':4,5]thieno[3,2-d]-pyrimidin-4(3H)-ones 10ac
A mixture of 9ac (1 mmol) and ammonium acetate (0.6 g, 8 mmol) in glacial acetic acid (100 mL) was heated under reflux for 6 h. The reaction mixture was evaporated under reduced pressure, the residue was triturated with cooled water, the solid formed was collected by filtration, washed with water, dried and crystallized from the proper solvents to afford the corresponding thienopyrimidino-pyridine 0.30 g (70%) 10ac, respectively.
7-(2-Chloro-6-ethoxypyridin-4-yl)-9-(4-fluorophenyl)-2-methylpyrido[3',2':4,5]thieno[3,2-d]-pyrimidin-4(3H)-one (10a). IR (KBr, cm−1): ν 3420 (NH), 1650 (C=O); 1H-NMR: δ 1.28 (t, 3H, CH3), 2.32 (s, 3H, CH3), 3.86 (q, 2H, CH2), 7.12–7.64 (m, 6H, 4 Ph-H + 2 pyr-H), 8.58 (s, 1H, pyr-5'-H), 9.26 (s, 1H, NH exchangeable with D2O); 13C-NMR: 14.08, 24.98, 64.42, 101.02, 102.54, 116.15, 121.04, 126.14, 128.85, 132.86, 136.76, 137.05, 145.88, 150.15, 151.98, 154.10, 154.86, 157.25, 160.03, 162.99, 164.28; MS, m/z (%): 467 [M+,18], 156 [100, base peak]; Elemental analysis for C23H16ClFN4O2S (466.91): calcd.: C, 59.16; H, 3.45; Cl, 7.59; N, 12.00; S, 6.87. found: C, 59.10; H, 3.38; Cl, 7.52; N, 11.94; S, 6.83.
7-(2-Chloro-6-ethoxypyridin-4-yl)-9-(4-chlorophenyl)-2-methylpyrido[3',2':4,5]thieno[3,2-d]-pyrimidin-4(3H)-one (10b). IR (KBr, cm−1): ν 3438 (NH), 1649 (C=O); 1H-NMR: δ 1.31 (t, 3H, CH3), 2.24 (s, 3H, CH3), 3.78 (q, 2H, CH2), 7.33–7.72 (m, 6H, 4 Ph-H + 2 pyr-H), 8.62 (s, 1H, pyr-5'-H), 9.32 (s, 1H, NH exchangeable with D2O); 13C-NMR: 13.98, 25.04, 64.53, 100.12, 101.36, 121.13, 126.45, 128.15, 129.05, 133.76, 135.99, 136.88, 145.76, 146.05, 149.85, 151.90, 154.16, 154.92, 157.48, 159.73, 164.36; MS, m/z (%): 483 [M+,18], 326 [100, base peak]; Elemental analysis for C23H16Cl2N4O2S (483.36): calcd.: C, 57.15; H, 3.34; Cl, 14.67; N, 11.59; S, 6.63. found: C, 57.10; H, 3.28; Cl, 14.62; N, 11.53; S, 6.58.
7-(2-Chloro-6-ethoxypyridin-4-yl)-9-(2,4-dichlorophenyl)-2-methylpyrido[3',2':4,5]thieno[3,2-d]-pyrimidin-4(3H)-one (10c). IR (KBr, cm−1): ν 3465 (NH), 1653 (C=O); 1H-NMR: δ 1.26 (t, 3H, CH3), 2.12 (s, 3H, CH3), 3.80 (q, 2H, CH2), 7.21–7.70 (m, 5H, 3 Ph-H + 2 pyr-H), 8.72 (s, 1H, pyr-5'-H), 9.48 (s, 1H, NH exchangeable with D2O); 13C-NMR: 13.92, 24.87, 64.42, 99.96, 101.02, 120.33, 126.32, 126.64, 128.36, 129.72, 132.88, 135.09, 136.64, 136.84, 145.86, 146.13, 149.77, 151.92, 153.96, 154.66, 157.68, 160.02, 164.48; MS, m/z (%): 518 [M+,5], 145 [100, base peak]; Elemental analysis for C23H15Cl3N4O2S (517.81): calcd.: C, 53.35; H, 2.92; Cl, 20.54; N, 10.82; S, 6.19. found: C, 53.30; H, 2.87; Cl, 20.50; N, 10.79; S, 6.14.
7-(2-Chloro-6-ethoxypyridin-4-yl)-9-(4-fluorophenyl)-2,3-dimethylpyrido[3',2':4,5]thieno[3,2-d]pyrimidin-4(3H)-ones 11ac. A solution of 10ac (1 mmol) in DMF (20 mL) was stirred with anhydrous K2CO3 (0.19 g, 1 mmol) for 10 min at room temperature, then methyl iodide (0.28 g, 2 mmol) in DMF (5 mL) were added. The reaction mixture was heated at 60 °C for 4 h, after cooling, poured into ice water, and the formed precipitate was filtered off, washed with water, dried and crystallized from the proper solvents to afford the corresponding thieno-N-methylpyrimidinopyridines 11ac, respectively.
7-(2-Chloro-6-ethoxypyridin-4-yl)-9-(4-fluorophenyl)-2,3-dimethylpyrido[3',2':4,5]thieno[3,2-d]pyrimidin-4(3H)-one (11a). IR (KBr, cm−1): ν 1668 (C=O); 1H-NMR: δ 1.28 (t, 3H, CH3), 2.32, 3.10 (2s, 6H, 2 CH3), 3.78 (q, 2H, CH2), 7.08–7.68 (m, 6H, 4 Ph-H + 2 pyr-H), 8.62 (s, 1H, pyr-5'-H); 13C-NMR: 14.00, 22.14, 26.06, 64.15, 100.10, 101.32, 116.18, 120.34, 126.34, 128.95, 132.90, 136.42, 145.76, 146.15, 149.85, 151.80, 154.02, 154.77, 157.36, 159.63, 162.76, 164.30; MS, m/z (%): 481 [M+,4], 98 [100, base peak]; Elemental analysis for C24H18ClFN4O2S (480.94): calcd.: C, 59.94; H, 3.77; Cl, 7.37; N, 11.65; S, 6.67. found: C, 59.88; H, 3.72; Cl, 7.33; N, 11.60; S, 6.61.
7-(2-Chloro-6-ethoxypyridin-4-yl)-9-(4-chlorophenyl)-2,3-dimethylpyrido[3',2':4,5]thieno[3,2-d]-pyrimidin-4(3H)-one (11b). IR (KBr, cm−1): ν 1670 (C=O); 1H-NMR: δ 1.29 (t, 3H, CH3), 2.18, 3.06 (2s, 6H, 2 CH3), 3.82 (q, 2H, CH2), 7.28–7.68 (m, 6H, 4 Ph-H + 2 pyr-H), 8.78 (s, 1H, pyr-5'-H); 13C-NMR: 13.86, 22.00, 26.28, 64.14, 99.58, 100.12, 120.56, 126.76, 128.00, 128.95, 133.45, 135.85, 136.56, 145.32, 146.75, 149.80, 150.87, 153.78, 154.65, 157.45, 160.02, 164.28; MS, m/z (%): 497 [M+,19], 162 [100, base peak]; Elemental analysis for C24H18Cl2N4O2S (497.39): calcd.: C, 57.95; H, 3.65; Cl, 14.26; N, 11.26; S, 6.45. found: C, 57.90; H, 3.59; Cl, 14.22; N, 11.20; S, 6.40.
7-(2-Chloro-6-ethoxypyridin-4-yl)-9-(2,4-dichlorophenyl)-2,3-dimethylpyrido[3',2':4,5]thieno[3,2-d]-pyrimidin-4(3H)-one (11c). IR (KBr, cm−1): ν 1667 (C=O); 1H-NMR: δ 1.28 (t, 3H, CH3), 2.22, 2.96 (2s, 6H, 2 CH3), 3.80 (q, 2H, CH2), 7.24–7.70 (m, 5H, 3 Ph-H + 2 pyr-H), 8.65 (s, 1H, pyr-5'-H); 13C-NMR: 13.90, 22.01, 26.48, 64.08, 99.86, 100.09, 120.60, 126.45, 126.58, 128.25, 129.52, 132.66, 135.14, 136.60, 136.78, 145.42, 146.78, 149.82, 151.14, 153.88, 154.72, 157.48, 159.72, 164.20; MS, m/z (%): 532 [M+,19], 252 [100, base peak]; Elemental analysis for C24H17Cl3N4O2S (531.84): calcd.: C, 54.20; H, 3.22; Cl, 20.00; N, 10.53; S, 6.03. found: C, 54.15; H, 3.16; Cl, 19.85; N, 10.48; S, 6.00.

3.2. Antimicrobial Screening Media

The following media were used:
  • PDA medium: this medium was used for fungi cultivation. It consists of 4 g dextrose/L potatoes extract.
  • Czapek Dox medium: it consists of 10 g glucose, 2 g KNO3, 1g K2HPO4, 0.5 g KCl, 0.5 g MgSO4, and 0.05 g ferrous sulphate/L distilled water. This medium is specialized for bacteria cultivation.
  • Medium 3: it consists of 10 glucose, 5 g peptone, 3 yeast extract, and 3 malt extract. It was used for yeast cultivation.

4. Conclusions

A series of newly compounds 311 were prepared using citrazinic acid (2,6-dihydroxyisonicotinic acid) as a starting material. The obtained derivatives were screening as antimicrobial and antifungal agents. Four of the synthesized compounds 5a, 7b, 9b and 10b exhibited potent antibacterial and antifungal bioactivity compared with streptomycin and fusidic acid used as reference drugs. The other tested compounds were found to exhibit moderate to low antibacterial activity. On the other hand when higher concentrations (3× and 4×) of compound 9a, which exhibited a moderate antibacterial activity, were used, this compound exhibited very good antibacterial activity. While different concentrations of compounds 5a and 10a exhibited a very good antifungal activity (2× and 3×).

Acknowledgments

The authors extend their appreciation to the Deanship of Scientific Research at King Saud University for funding the work through the research group project No. RGP-VPP-172.

References

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Sample Availability: Samples of the compounds are available from the authors.
Scheme 1. Synthetic Pathway for Compound 37.
Scheme 1. Synthetic Pathway for Compound 37.
Molecules 17 13642 sch001
Scheme 2. Synthetic Pathway for Compound 911.
Scheme 2. Synthetic Pathway for Compound 911.
Molecules 17 13642 sch002
Table 1. Melting points, crystallization solvents, yields, molecular formulae and molecular weights of compounds 37.
Table 1. Melting points, crystallization solvents, yields, molecular formulae and molecular weights of compounds 37.
Comp. No.XYYield (%)M.p. (°C)Cryst. Solv.Molecular Formula (Mol. Wt.)
3aFH86185–187EtOHC16H13ClFNO2 (505.73)
3bClH82155–157EtOHC16H13Cl2NO2 (322.19)
3cClCl85203–205EtOHC16H12Cl3NO2 (356.63)
4aFH65192–194DMF/H2O (2:1)C19H13ClFN3OS (385.84)
4bClH58206–208AcOH/H2O (2:1)C19H13Cl2N3OS (402.30)
4cClCl70225–227DMF/H2O (2:1)C19H12Cl3N3OS (436.74)
5aFH78198–200EtOH/Ether (2:1)C23H19ClFN3O3S (471.93)
5bClH76189–191EtOH/Ether (2:1)C23H19Cl2N3O3S (488.39)
5cClCl69245–257EtOH/Ether (2:1)C23H18Cl3N3O3S (522.83)
6aFH65176–178DioxaneC23H19ClFN3O3S (471.93)
6bClH70214–216EtOHC23H19Cl2N3O3S (488.39)
6cClCl58235–237DMF/EtOH (2:1)C23H18Cl3N3O3S (522.83)
7aFH86200–202MeOHC21H16ClFN4O2S (442.89)
7bClH85228–230AcOHC21H16Cl2N4O2S (459.35)
7cClCl84256–258AcOH/H2O (2:1)C21H15Cl3N4O2S (493.79)
Table 2. Melting points, crystallization solvents, yields, molecular formulae and molecular weights of compounds 911.
Table 2. Melting points, crystallization solvents, yields, molecular formulae and molecular weights of compounds 911.
Comp. No.XYYield (%)M.p. (°C)Cryst. Solv.Molecular Formula (Mol. Wt.)
9aFH75195–197EtOHC23H15ClFN3O3S (467.90)
9bClH68214–216AcOHC23H15Cl2N3O3S (484.35)
9cClCl60282–284DMF/H2O (2:1)C23H14Cl3N3O3S (518.80)
10aFH80178–180AcOH/H2O (2:1)C23H16ClFN4O2S (466.92)
10bClH72188–190AcOH/H2O (2:1)C23H16Cl2N4O2S (483.37)
10cClCl65256–258DMF/H2O (2:1)C23H15Cl3N4O2S (517.81)
11aFH78186–188AcOH/H2O (2:1)C24H18ClFN4O2S (480.94)
11bClH66200–202AcOHC24H18Cl2N4O2S (497.40)
11cClCl72264–266DMF/H2O (2:1)C24H17Cl3N4O2S (531.84)
Table 3. Antimicrobial activities of the newly synthesized compounds 311.
Table 3. Antimicrobial activities of the newly synthesized compounds 311.
Comp. No.FungiYeast
Str. sp
Bacteria
A.nPen. spC. aR.iGram − veGram + ve
B.sS.lE.cP. sp
3a121212111314141413
3b12121011987911
3c8109111212121114
4a101211111311101211
4b111213111413111212
4c101212131312101211
5a171616172223242321
5b454378798
5c13121213111312109
6a101310112120212323
6b88671112131312
6c121313121311131213
7a13121213111312109
7b7589612131312
7c12131113128867
9a121011112020211920
9b19201919111312109
9c101111121011101211
10a151613141111121213
10b232222201123222423
10c111012111110121111
11a13121213111312109
11b101211111311101211
11c131110121110121111
Streptomycin----2122212221
Fusidic acid17171818-----
A.n: Aspergillus niger; Pen. sp: Penicillium sp; C. a: Candida albican; Str. sp: Streptomyces sp; R.i: Rhodotorula ingeniosa; B.s: Bacillus subtilis; S.l: Streptococcus lactis; E.c: Escherichia coli; P. sp: Pseudomonas sp.
Table 4. Antibacterial activity of compound 9a at different concentrations.
Table 4. Antibacterial activity of compound 9a at different concentrations.

Comp. No.

Conc.

Strep. sp
Bacteria
Gram − veGram + ve
B.sS.lE.cPs
9a2020211920
2323222322
2524242426
2525272526
Where × = 10 μg.
Table 5. Antifungal activity of compounds 5a and 10a at different concentrations.
Table 5. Antifungal activity of compounds 5a and 10a at different concentrations.
Comp. No.Conc.Fungi
A.nPen. spC. aR.i
5a17161617
18181919
19202021
20222021
10a15161314
16181817
18202020
20222021
Where × = 10 μg.

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Hossan, A.S.M.; Abu-Melha, H.M.A.; Al-Omar, M.A.; Amr, A.E.-G.E. Synthesis and Antimicrobial Activity of Some New Pyrimidinone and Oxazinone Derivatives Fused with Thiophene Rings Using 2-Chloro-6-ethoxy-4-acetylpyridine as Starting Material. Molecules 2012, 17, 13642-13655. https://doi.org/10.3390/molecules171113642

AMA Style

Hossan ASM, Abu-Melha HMA, Al-Omar MA, Amr AE-GE. Synthesis and Antimicrobial Activity of Some New Pyrimidinone and Oxazinone Derivatives Fused with Thiophene Rings Using 2-Chloro-6-ethoxy-4-acetylpyridine as Starting Material. Molecules. 2012; 17(11):13642-13655. https://doi.org/10.3390/molecules171113642

Chicago/Turabian Style

Hossan, Aisha S. M., Hanaa M. A. Abu-Melha, Mohamed A. Al-Omar, and Abd El-Galil E. Amr. 2012. "Synthesis and Antimicrobial Activity of Some New Pyrimidinone and Oxazinone Derivatives Fused with Thiophene Rings Using 2-Chloro-6-ethoxy-4-acetylpyridine as Starting Material" Molecules 17, no. 11: 13642-13655. https://doi.org/10.3390/molecules171113642

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