Database and Motifs High-scoring Motif Occurences Debugging Information Results in TSV Format Results in GFF3 Format



FIMO - Motif search tool

FIMO version 5.2.0, (Release date: Wed Oct 14 12:02:54 2020 -0700)

For further information on how to interpret these results please access http://meme-suite.org//doc/fimo-output-format.html.
To get a copy of the FIMO software please access http://meme-suite.org

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]


DATABASE AND MOTIFS

DATABASE ./bZIP_intersect_summits.fasta
Database contains 5670 sequences, 2835000 residues

MOTIFS db/ARABD/ArabidopsisDAPv1.meme (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
ABI3VP1_tnt.AT5G18090_col_a_m1 15 GATGATGAAGAAAAG
ABI3VP1_tnt.AT5G25475_col_a_m1 6 CAAGCA
ABI3VP1_tnt.AT5G60130_col_a_m1 19 AAGCAAAAAATAAGCAAAA
ABI3VP1_tnt.AT5G60130_colamp_a_m1 21 TTTTTGCTTATTTTTTGCTTA
ABI3VP1_tnt.FUS3_col_a_m1 15 ATATACATGCATGCA
ABI3VP1_tnt.NGA4_col_a_m1 16 CCTGTTCAGGTGATTT
ABI3VP1_tnt.REM16_col_a_m1 21 TTTACGTTTTTGGCGGGAAAA
ABI3VP1_tnt.VRN1_col_a_m1 29 TTTTTTTTTTTTTTTTTTTTTTTTTTTTC
ABI3VP1_tnt.VRN1_colamp_a_m1 19 CTGTTTTTTTTTTTTTTTT
AP2EREBP_tnt.ABR1_col_a_m1 19 GGCGGAAATGGCGGCGGCG
AP2EREBP_tnt.ABR1_colamp_a_m1 21 CACCGCCGCCGCCATTTCCGC
AP2EREBP_tnt.AIL7_col_a_m1 11 CGATTCCCGAG
AP2EREBP_tnt.AIL7_colamp_a_m1 12 ACGAATCCCGAG
AP2EREBP_tnt.AT1G01250_col_a_m1 15 GATATTGTCGGTGGT
AP2EREBP_tnt.AT1G01250_colamp_a_m1 15 TGTCGGTGGAGATGA
AP2EREBP_tnt.AT1G12630_col_a_m1 21 CGCCGCCGCCTTCGCCGACAA
AP2EREBP_tnt.AT1G12630_colamp_a_m1 16 GATTTTGTCGGCAAAA
AP2EREBP_tnt.AT1G28160_col_a_m1 15 TGGCGGCGGCGGTGG
AP2EREBP_tnt.AT1G28160_colamp_a_m1 14 CGCCGCCGCCGCCA
AP2EREBP_tnt.AT1G44830_col_a_m1 15 CCACCTCCACCGCCA
AP2EREBP_tnt.AT1G71450_col_a_m1 20 CACCGCCGCCGCCACCGCCA
AP2EREBP_tnt.AT1G71450_colamp_a_m1 13 CCTCCACCGTCAC
AP2EREBP_tnt.AT1G77200_col_a_m1 14 CCACCGACAAATTC
AP2EREBP_tnt.AT1G77200_colamp_a_m1 12 ATTGTCGGTGAA
AP2EREBP_tnt.AT3G16280_col_a_m1 14 TATTGTCGGTGGAG
AP2EREBP_tnt.AT3G16280_colamp_a_m1 14 CCACCGACAATTTT
AP2EREBP_tnt.AT3G57600_col_a_m1 11 CCGCCACCGCC
AP2EREBP_tnt.AT3G60490_col_a_m1 14 AATATTGTCGGTGG
AP2EREBP_tnt.AT3G60490_colamp_a_m1 16 AAAATTGTCGGTGGAG
AP2EREBP_tnt.AT4G18450_col_a_m1 17 GCGGCGGCGGCGGCGGC
AP2EREBP_tnt.At1g19210_col_a_m1 14 ATGGACGGTGGAGG
AP2EREBP_tnt.At1g19210_colamp_a_m1 15 CATCTCCACCGTCCA
AP2EREBP_tnt.At1g22810_col_m1 15 GGCGGTGGCGGTGGA
AP2EREBP_tnt.At1g22810_colamp_a_m1 15 CGCCACCGACACAGC
AP2EREBP_tnt.At1g36060_col_a_m1 14 ATGGTCGGTGGAGG
AP2EREBP_tnt.At1g36060_colamp_a_m1 14 CCTCCACCGACCAT
AP2EREBP_tnt.At1g75490_col_a_m1 15 CCACCTCCACCGCCA
AP2EREBP_tnt.At1g75490_colamp_a_m1 15 CACCTCCACCGCCAC
AP2EREBP_tnt.At1g77640_col_a_m1 21 GGTGGTGGTGGTGTCGGTGGA
AP2EREBP_tnt.At2g33710_col_m1 15 CCTCCGCCGCCGCCA
AP2EREBP_tnt.At2g33710_colamp_a_m1 18 TCCGCCGCCGCCACCTCC
AP2EREBP_tnt.At2g44940_col_a_m1 15 AATTGTCGGTGGAGT
AP2EREBP_tnt.At2g44940_colamp_a_m1 13 ATTGTCGGTGGAG
AP2EREBP_tnt.At4g16750_col_a_m1 15 CACCGCCACCGACAC
AP2EREBP_tnt.At4g16750_colamp_a_m1 17 AGTGTCGGTGGAAATAA
AP2EREBP_tnt.At4g28140_col_a_m1 20 GGCGGTGGAGGCGGTGGTGG
AP2EREBP_tnt.At4g28140_colamp_a_m1 15 GGTCGGTGGAGGTGG
AP2EREBP_tnt.At4g31060_col_a_m1 20 CCACCGACAAAACCACCACC
AP2EREBP_tnt.At4g31060_colamp_a_m1 15 ATTTTGTCGGTGGAG
AP2EREBP_tnt.At4g32800_col_m1 16 CTCCACCGACAATTTC
AP2EREBP_tnt.At4g32800_colamp_a_m1 16 AATTTTGTCGGTGGAT
AP2EREBP_tnt.At5g18450_col_a_m1 15 GGTGGAGGCGGTGGA
AP2EREBP_tnt.At5g65130_col_a_m1 15 CCACCGCCGCCGCCA
AP2EREBP_tnt.At5g65130_colamp_a_m1 19 CCACCACCTCCACCGACAA
AP2EREBP_tnt.At5g67000_col_a_m1 15 CTGTTGCGGCGGCGG
AP2EREBP_tnt.CBF1_col_a_m1 12 TTCGCCGACATC
AP2EREBP_tnt.CBF1_colamp_a_m1 15 TGATGTCGGCGAAGA
AP2EREBP_tnt.CBF2_col_a_m1 15 TCTTTGCCGACATCA
AP2EREBP_tnt.CBF2_colamp_a_m1 13 TTATGTCGGCAAA
AP2EREBP_tnt.CBF3_col_a_m1 14 CTTCACCGACATAA
AP2EREBP_tnt.CBF3_colamp_a_m1 11 TATGTCGGTAA
AP2EREBP_tnt.CBF4_col_a_m1 13 TGATGTCGGCGAA
AP2EREBP_tnt.CBF4_colamp_a_m1 12 TGATGTCGGCAA
AP2EREBP_tnt.CEJ1_col_a_m1 15 CCACCTCCACCGACA
AP2EREBP_tnt.CEJ1_colamp_a_m1 13 AATCACCGACAAT
AP2EREBP_tnt.CRF10_col100_a_m1 15 CCGCCGCCGCCGCCA
AP2EREBP_tnt.CRF10_colamp_a_m1 17 ATAGAATCTTAGATTCT
AP2EREBP_tnt.CRF4_col_a_m1 21 CCTCCGCCGCCGCCGCCGCCG
AP2EREBP_tnt.CRF4_colamp_a_m1 15 TGGCGGCGGCGGCGG
AP2EREBP_tnt.DDF1_col_a_m1 15 TGATGTCGGCGACGA
AP2EREBP_tnt.DDF1_colamp_a_m1 13 TCTTCGCCGACAT
AP2EREBP_tnt.DDF2_col_a_m1 15 TGATGTCGGCGAAGA
AP2EREBP_tnt.DEAR2_col_a_m1 15 CCACCGCCACCGACA
AP2EREBP_tnt.DEAR2_colamp_a_m1 15 ATGTCGGTGGCGGTG
AP2EREBP_tnt.DEAR3_col_a_m1 17 AATTGTCGGTGGTGGCA
AP2EREBP_tnt.DEAR3_colamp_a_m1 13 ATTGTCGGTGATT
AP2EREBP_tnt.DEAR5_col_a_m1 19 CTTCATCACCACCGACAAT
AP2EREBP_tnt.DEAR5_colamp_a_m1 11 ATTGTCGGTGA
AP2EREBP_tnt.DREB19_col_a_m1 17 CACCTCCACCGACATTA
AP2EREBP_tnt.DREB19_colamp_a_m1 14 TTAAACCGACATTA
AP2EREBP_tnt.DREB26_col_a_m1 20 CCACCACCACCTCCACCGAC
AP2EREBP_tnt.DREB2_col_a_m1 21 TGGTTATGTCGGTGGAGGTGG
AP2EREBP_tnt.DREB2_colamp_a_m1 15 TCTCCACCGACATAA
AP2EREBP_tnt.ERF104_col_a_m1 19 CGCCGCCGCCGCCGCCGCC
AP2EREBP_tnt.ERF104_colamp_a_m1 15 TGGCGGCGGCGGCGG
AP2EREBP_tnt.ERF105_col_m1 15 GTGGCGGCGGCGGAG
AP2EREBP_tnt.ERF105_colamp_a_m1 24 CCGCCGCCGCCGCCGCCGCCGCCG
AP2EREBP_tnt.ERF10_col_a_m1 21 TCCACCGCCTCCGCCGCCGCC
AP2EREBP_tnt.ERF10_colamp_a_m1 20 CGGCGGAAATGGCGGCGGAG
AP2EREBP_tnt.ERF115_col_a_m1 15 CCGCCGCCACCGCCG
AP2EREBP_tnt.ERF115_colamp_a_m1 15 GCGATGGCGGCGGCG
AP2EREBP_tnt.ERF11_col_b_m1 15 CCACCGCCGCCGCCA
AP2EREBP_tnt.ERF11_colamp_a_m1 20 GGAAATGGCGGCGGCGGAGG
AP2EREBP_tnt.ERF13_col_b_m1 15 CTCCGCCGCCATTTC
AP2EREBP_tnt.ERF13_colamp_a_m1 15 AAATGGCGGCGGAGG
AP2EREBP_tnt.ERF15_col_m1 15 CGCCTCCGCCGCCGC
AP2EREBP_tnt.ERF15_colamp_a_m1 18 CGCCGCCTCAGCCGCCAT
AP2EREBP_tnt.ERF1_col_a_m1 28 CCGCCTCCGCCGCCACCACCGCCGCCGC
AP2EREBP_tnt.ERF1_colamp_a_d1 8 CGGCGGCG
AP2EREBP_tnt.ERF2_col_a_m1 21 CCGCCGCCTCCGCCGCCGCCA
AP2EREBP_tnt.ERF2_colamp_a_m1 21 CCGCCGCCGCCTCCGCCGCCA
AP2EREBP_tnt.ERF38_col_a_m1 15 TGTCGGTGGAGGTGG
AP2EREBP_tnt.ERF3_col_a_m1 15 TGGCGGCGGCGGTGG
AP2EREBP_tnt.ERF3_colamp_a_m1 20 TGGCGGCGGCGGCGGCGGCG
AP2EREBP_tnt.ERF48_col_a_m1 21 GGCGGTGGTGGTGGCGGTGGA
AP2EREBP_tnt.ERF4_col_a_m1 15 CCTCCGCCGCCATTT
AP2EREBP_tnt.ERF4_colamp_a_m1 20 GGAAATGGCGGCGGAGGTGG
AP2EREBP_tnt.ERF5_col_a_m1 15 CCACCGCCGCCGCCA
AP2EREBP_tnt.ERF5_colamp_a_m1 21 CCGCCGCCGCCGCCGCCGCCG
AP2EREBP_tnt.ERF6_col_m1 21 CCGCCGCCGCCGCCGCCACCG
AP2EREBP_tnt.ERF73_col_a_m1 21 CCACCGCCGCCGCCATTTCCG
AP2EREBP_tnt.ERF73_colamp_a_m1 21 ATGGCGGCGGCGGCGGCGGCG
AP2EREBP_tnt.ERF7_col_a_m1 21 CCACCGCCTCCGCCGCCGCCA
AP2EREBP_tnt.ERF7_colamp_a_m1 21 ATGGCGGCGGAGGTGGCGGAG
AP2EREBP_tnt.ERF8_col_a_m1 15 TCCTCCGCCGCCGCC
AP2EREBP_tnt.ERF8_colamp_a_m1 18 AAAATGGCGGCGGAGGTG
AP2EREBP_tnt.ERF9_col_a_m1 21 CGGCGGCGGTGGCGGCGGCGG
AP2EREBP_tnt.ERF9_colamp_a_m1 17 TCCTCCGCCGCCATTTT
AP2EREBP_tnt.ESE1_col_a_m1 15 CGGCGGCGGCGGCGG
AP2EREBP_tnt.ESE1_colamp_a_m1 20 GGCGGCGGCGGCGGCGGCGG
AP2EREBP_tnt.ESE3_col_a_m1 19 CGGAGGTGGCGGCGGAGGA
AP2EREBP_tnt.ESE3_colamp_a_m1 15 GTGGCGGCGGCGGAG
AP2EREBP_tnt.LEP_col_a_m1 21 TCCGCCGCCGCCACCGCCGCC
AP2EREBP_tnt.PLT1_col_a_m1 19 GGCACGGATCCCGAGGAAA
AP2EREBP_tnt.PLT1_colamp_a_m1 14 GCACGAATCCCGAG
AP2EREBP_tnt.PLT3_col_a_m1 15 CCTCGGGATTCGTGC
AP2EREBP_tnt.PUCHI_col_a_m1 15 CCGCCGCCGCCGCCA
AP2EREBP_tnt.PUCHI_colamp_a_m1 25 GCGGCGGTGGCGGCGGCGGCGGAGG
AP2EREBP_tnt.RAP211_col_a_m1 15 CCGCCGCCGCCGGCG
AP2EREBP_tnt.RAP211_colamp_a_m1 15 TTTTGGCCGGCTATT
AP2EREBP_tnt.RAP212_col_a_m1 21 CGGCGGAAATGGCGGCGGAGG
AP2EREBP_tnt.RAP21_col_a_m1 13 GTGTCGGTGGTGG
AP2EREBP_tnt.RAP21_colamp_a_m1 20 CCTCCACCGACATTTCCACC
AP2EREBP_tnt.RAP26_col_a_m1 15 TGGCGGCGGCGGAGG
AP2EREBP_tnt.RAP26_colamp_a_d1 6 CGCCGC
AP2EREBP_tnt.RRTF1_col_a_m1 15 GAAATTGCGGCGGCG
AP2EREBP_tnt.RRTF1_colamp_a_m1 19 GGAAATTGCGGCGGCGGTG
AP2EREBP_tnt.Rap210_col_a_m1 15 TTTTGTCGGCAAAGG
AP2EREBP_tnt.Rap210_colamp_a_m1 14 TTTGTCGGCAAAAA
AP2EREBP_tnt.SHN3_col_a_m1 21 TCCGCCGCCGCCGCCGCCGCC
AP2EREBP_tnt.TINY_col_a_m1 15 CTCCACCGACAAAAT
ARF_ecoli.MP_col_m1 10 GCCGACAAAA
ARF_tnt.ARF16_col_b_m1 21 TTTACGTTTTTGGCGGGAAAA
ARF_tnt.ARF2_col_v31_m1 10 ATCCGACAAA
ARID_tnt.AT1G04880_col_a_m1 16 TATATTATATAGTTTT
ARID_tnt.AT1G04880_colamp_a_m1 15 AAACTATATAATATA
ARID_tnt.AT1G20910_col_a_m1 11 AAATTTAATTT
ARID_tnt.AT2G17410_col_a_m1 15 AAATTAAAATTAAAT
ARID_tnt.At1g76110_col_a_m1 11 ATAATTTAATT
ARID_tnt.At1g76110_colamp_a_m1 15 ATTAATAATTTAATT
ARID_tnt.At3g13350_col_a_d1 6 TTATTA
BBRBPC_tnt.BPC1_col_a_m1 24 GAGAGAGAGAGAGAGAGAGAGAGA
BBRBPC_tnt.BPC1_colamp_a_m1 15 CTCTCTCTCTCTCTC
BBRBPC_tnt.BPC5_col_a_m1 30 AGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
BBRBPC_tnt.BPC5_colamp_a_m1 29 GAGAGAGAGAGAGAGAGAGAGAGAGAGAG
BBRBPC_tnt.BPC6_col_a_m1 21 CTCTCTCTCTCTCTCTCTCTC
BES1_tnt.BAM8_col_a_m1 15 TCACACGTGTGAACT
BES1_tnt.BAM8_colamp_a_m1 15 AGTTCACACGTGTGA
BSD_tnt.AT1G10720_col_a_m1 14 AGAAGCTTCTAGAA
BZR_tnt.At1g78700_col_a_m1 11 CGCACGTGTGG
BZR_tnt.At1g78700_colamp_a_m1 15 CCGCACGTGTGTATT
BZR_tnt.At4g18890_col_a_m1 11 CGCACGTGTGA
BZR_tnt.At4g18890_colamp_a_m1 11 CGCACGTGTGA
BZR_tnt.At4g36780_col_a_m1 11 TCACACGTGCG
BZR_tnt.At4g36780_colamp_a_m1 14 TCACACGTGTGCAT
BZR_tnt.BZR1_col_a_m1 20 CCACACGTGCGACTTTTTTT
C2C2COlike_tnt.AT4G27900_col_a_m1 22 AATCAACGGTTGAGATTTATTC
C2C2COlike_tnt.AT5G59990_col_a_m1 21 ATAAAATGGACGGTTGAGATT
C2C2COlike_tnt.AT5G59990_colamp_a_m1 15 AATCTCAACCGTTCA
C2C2YABBY_tnt.CRC_col_a_m1 8 TATGATTA
C2C2YABBY_tnt.CRC_colamp_a_m1 30 CAAGTCATATTCGACTCCAAAACACTAACC
C2C2dof_tnt.AT1G47655_col_a_m1 11 AGAAAAAGTAA
C2C2dof_tnt.AT1G47655_colamp_a_m1 15 TTTTTTTCTTTTTTT
C2C2dof_tnt.AT1G69570_col_a_m1 27 TTTTCACTTTTTCTTTTTTTTTTTTTT
C2C2dof_tnt.AT1G69570_colamp_a_m1 21 AAAAAAAAAAAAGAAAAAGTG
C2C2dof_tnt.AT2G28810_col_a_m1 21 TTTTTTTTTTTTTACTTTTTT
C2C2dof_tnt.AT2G28810_colamp_a_m1 15 TTTACTTTTTGTTTT
C2C2dof_tnt.AT3G52440_col_a_m1 11 CAAAAAGTTAA
C2C2dof_tnt.AT3G52440_colamp_a_m1 21 AATTTTACTTTTTGTTTTTTT
C2C2dof_tnt.AT5G02460_col_a_m1 21 AAAAAAGTAAAAAAAAAAAAA
C2C2dof_tnt.AT5G02460_colamp_a_m1 19 TTTTTACTTTTTTTTTTTT
C2C2dof_tnt.AT5G66940_col_a_m1 29 TTTTTTTTTTTTTTTACTTTTTTTTTTTT
C2C2dof_tnt.AT5G66940_colamp_a_m1 21 TTTTTTTACTTTTTCTTTTTT
C2C2dof_tnt.Adof1_col_a_m1 21 AAAAAGAAAAAGTAAAAAAAA
C2C2dof_tnt.Adof1_colamp_a_m1 21 AAAAAAGAAAAAGTAAAAAAA
C2C2dof_tnt.At1g64620_100ng20cy_b_m1 19 AAAAAAAAAAAAGTTAAAA
C2C2dof_tnt.At1g64620_colamp_a_m1 11 CAAAAAGTAAA
C2C2dof_tnt.At3g45610_col_a_m1 19 TTTACTTTTTGCTTTTTTT
C2C2dof_tnt.At3g45610_colamp_a_m1 15 TTTTTTTACTTTTTG
C2C2dof_tnt.At4g38000_col_a_m1 28 TTTTTTTTTTTTTTTTTTTTACTTTTTT
C2C2dof_tnt.At4g38000_colamp_a_m1 11 GAAAAAGTTAA
C2C2dof_tnt.At5g62940_col_a_m1 21 AAAAAAAAGAAAAAGTAAAAA
C2C2dof_tnt.CDF3_col_a_m1 19 AAAAAAGAAAAAGTGAAAA
C2C2dof_tnt.CDF3_colamp_a_m1 18 TTCACTTTTTCTTTTTTT
C2C2dof_tnt.COG1_col_a_m1 21 AAAAAAAAGAAAAAGTGAAAA
C2C2dof_tnt.COG1_colamp_a_m1 15 TTTTTTCACTTTTTT
C2C2dof_tnt.DAG2_col_a_m1 11 CAAAAAGTAAA
C2C2dof_tnt.DAG2_colamp_a_m1 13 CAAAAAGTTAAAT
C2C2dof_tnt.OBP1_col_a_m1 21 TTTTTTTTTTTTTTACTTTTT
C2C2dof_tnt.OBP3_col_a_m1 21 TTTACTTTTTTTTTTTTTTTT
C2C2dof_tnt.OBP3_colamp_a_m1 19 TTTTTTTTTTTACTTTTTT
C2C2dof_tnt.OBP4_col_a_m1 14 CAAAAAGTTAAAAA
C2C2dof_tnt.OBP4_colamp_a_m1 19 AAAAAACAAAAAGTAAAAA
C2C2dof_tnt.dof24_col_a_m1 15 TTTTTTTACTTTTTG
C2C2dof_tnt.dof24_colamp_a_m1 15 AAAAACAAAAAGTAA
C2C2dof_tnt.dof42_col_a_m1 19 AAAAAAAAAAGGCAAAAAA
C2C2dof_tnt.dof43_col_a_m1 11 AAAGCTACTTT
C2C2dof_tnt.dof43_colamp_a_m1 14 AAAAGCTACTTTTT
C2C2dof_tnt.dof45_col_a_m1 14 GAAAAAGTAACTTT
C2C2dof_tnt.dof45_colamp_a_m1 15 AAAAAAGTAGCTTTT
C2C2gata_tnt.GATA11_col_a_m1 15 AGATCTAGATCTGAA
C2C2gata_tnt.GATA12_col_a_m1 13 GATCCAGATCTAA
C2C2gata_tnt.GATA12_colamp_a_m1 15 TAGATCTGGATCTGA
C2C2gata_tnt.GATA14_col_a_m1 15 TTTAGATCTGATTTT
C2C2gata_tnt.GATA15_col_b_m1 19 CATCATCATCATCATCATC
C2C2gata_tnt.GATA16_col_a_m1 27 CATCATCATCATCATCATCATCATCAT
C2C2gata_tnt.GATA19_col_a_m1 11 CAGATCGGATT
C2C2gata_tnt.GATA19_colamp_a_m1 11 CGGATCGGATT
C2C2gata_tnt.GATA1_col_a_m1 15 ATGGTGATGATGATG
C2C2gata_tnt.GATA1_colamp_a_m1 14 GATTCAGATCTGAA
C2C2gata_tnt.GATA20_col_a_m1 8 ATCGGATC
C2C2gata_tnt.GATA20_colamp_a_m1 13 TCGATCGGATTAG
C2C2gata_tnt.GATA4_col_a_m1 15 TTTCAGATCTGAATC
C2C2gata_tnt.GATA6_col200_a_m1 13 TAGATCTAGATCT
C2C2gata_tnt.ZIM_col_a_m1 15 TCTCAACCGTTGGAT
C2C2gata_tnt.ZML1_col_a_m1 15 TCATCATCATCATCA
C2C2gata_tnt.ZML1_colamp_a_m1 21 ATAAATCTCAACCGTTGGATT
C2C2gata_tnt.ZML2_col_a_m1 19 CATCATCATCATCATCATC
C2H2_tnt.AT2G15740_col_a_m1 11 AACGATGACGA
C2H2_tnt.AT3G46070_col_a_m1 15 TCATTTTCACTCTCC
C2H2_tnt.AT3G49930_col_a_m1 7 GAAATCT
C2H2_tnt.AT4G26030_col_a_m1 19 CAATAATTTCACCAACCTT
C2H2_tnt.AT5G22990_col_a_m1 15 TCGTCATCGTTTTCG
C2H2_tnt.AZF1_colamp_a_m1 11 AGTGTGAGTGA
C2H2_tnt.At1g14580_col_a_m1 20 TTTTTTTTTGTCGTTTTGTG
C2H2_tnt.At1g14580_colamp_a_m1 17 CACAAAACGACAAAAAA
C2H2_tnt.At2g41835_col_b_m1 7 TTGAAAA
C2H2_tnt.At2g48100_col_b_m1 6 TCACCA
C2H2_tnt.At3g60580_col_a_m1 8 TGTAGTAG
C2H2_tnt.At5g04390_col200_a_m1 11 TAGTGAAGTTG
C2H2_tnt.At5g22890_col_a_m1 18 CAGATAACACCTGCACAA
C2H2_tnt.At5g66730_col_m1 17 AAGAAAACGACAAAAAA
C2H2_tnt.At5g66730_colamp_a_m1 17 TTTTTTGTCGTTTTCTG
C2H2_tnt.AtIDD11_col_a_m1 21 TTTTTTTTTTTGTCTTTTTCT
C2H2_tnt.AtIDD11_colamp_a_m1 18 TTTTTTTGTCGTTTTGTG
C2H2_tnt.IDD2_col_a_m1 15 CACAAAACGACAAAA
C2H2_tnt.IDD2_colamp_a_m1 18 TTTTTTTGTCGTTTTCTT
C2H2_tnt.IDD4_col_a_m1 17 CACAAAACGACAAAAAA
C2H2_tnt.IDD5_col_m1 16 TTTTTGTCGTTTTGTG
C2H2_tnt.IDD5_colamp_a_m1 17 TTTTTTGTCGTTTTGTG
C2H2_tnt.IDD7_col_a_m1 18 CACAAAACGACAAAAAAA
C2H2_tnt.JGL_col_a_m1 11 ACTTTCAGTTA
C2H2_tnt.JKD_col_a_m1 20 TTTTTTTTTGTCGTTTTCTG
C2H2_tnt.MGP_col_a_m1 20 CAGAAAACGACAAAAAAAAA
C2H2_tnt.MGP_colamp_a_m1 18 TTTTTTTGTCGTTTTCTG
C2H2_tnt.NUC_col_a_m1 20 TTTTTTTTTGTCGTTTTGTG
C2H2_tnt.NUC_colamp_a_m1 17 TTTTTTGTCGTTTTGTG
C2H2_tnt.SGR5_col_a_m1 15 AAAAAAAGACAAAAA
C2H2_tnt.SGR5_colamp_a_m1 15 TTTTGTCTTTTTTTT
C2H2_tnt.STOP1_col_a_m1 19 CCTTCCCCAGATAAAACCT
C2H2_tnt.STOP1_colamp_a_m1 15 ACCTTCCCCAGATAA
C2H2_tnt.STZ_col_m1 11 CACTTTCACTA
C2H2_tnt.STZ_colamp_a_m1 8 ACTTCACT
C2H2_tnt.TF3A_col_a_m1 19 CCTCCTCCTCCTCCTCCTC
C2H2_tnt.WIP5_col_a_m1 15 TACCTGGAGAACATA
C2H2_tnt.WIP5_colamp_a_m1 15 TACCTGGAGAACATA
C3H_tnt.AT3G12130_colamp_a_m1 14 AAACAAAAAGTTAA
C3H_tnt.AT5G63260_col_a_m1 11 GAAAAAGTTAA
C3H_tnt.AT5G63260_colamp_a_m1 11 CAAAAAGTAAA
C3H_tnt.At1g70910_col_a_m1 7 ATCACCA
C3H_tnt.At1g74370_col_a_m1 20 GATAGTGTTAAGGATAAGAT
C3H_tnt.At5g08750_col_a_m1 15 ACCTCAGCCGCAAAA
C3H_tnt.CDM1_colamp_a_m1 15 CCGAAAAAATCGGAA
C3H_tnt.EMB1789_col_a_m1 15 TTTTTTTTTTACCGT
C3H_tnt.TZF9_col_a_m1 6 TCAACA
C3H_tnt.U2AF35B_col_a_m1 7 TTGTTGA
CAMTA_tnt.CAMTA1_col_a_m1 12 AAAGCGCGTGAA
CAMTA_tnt.CAMTA5_col_a_m1 18 CCGTGTAAAAAACGCGTT
CCAATHAP3_tnt.HAP3_col_a_m1 9 TCCATCATC
CCAATHAP3_tnt.NFYB4_col_a_m1 7 TGAAAAC
CPP_tnt.AT2G20110_col_a_m1 15 TTTTAAATTTTTTAA
CPP_tnt.AT2G20110_colamp_a_m1 15 AATTTGAATTTTAAA
CPP_tnt.SOL1_col_m1 15 TTTTAAAATTTAAAT
CPP_tnt.SOL1_colamp_a_m1 15 AATTTAAATTTTAAA
CPP_tnt.TCX2_col_a_m1 15 ATTTAAAATTCAAAT
CPP_tnt.TCX2_colamp_a_m1 14 TTTAAAATTTAAAT
CPP_tnt.TSO1_col_a_m1 15 ATTTTAAAATTTAAA
DBP_tnt.AT3G51470_col_a_m1 15 TACGGTGCACCACCA
E2FDP_tnt.DEL1_col_a_m1 21 AAAAAAATTTTCCCGCCAAAA
E2FDP_tnt.DEL1_colamp_a_m1 15 TTTTTGGCGGGAAAA
E2FDP_tnt.DEL2_col_a_m1 20 TTATTTTTTTGGCGGGAAAA
E2FDP_tnt.DEL2_colamp_a_m1 15 TTTTTGGCGGGAAAA
E2FDP_tnt.E2FA_col_a_m1 14 ATTTGGCGCCAAAA
E2FDP_tnt.E2FA_colamp_a_m1 14 TTTTGGCGCCATTT
E2FDP_tnt.E2FC_col_a_m1 15 ATTTTGGCGCCAAAA
EIL_tnt.EIL3_col_b_m1 21 GTGTCTAGGTTCATTGTATCT
EIL_tnt.EIN3_col_a_m1 15 GTCTAGATTCAATGA
EIL_tnt.EIN3_colamp_a_d1 7 ACCGTTA
FAR1_tnt.FAR1_col_a_m1 15 ACCTCACGCGCCTCC
FAR1_tnt.FAR1_colamp_a_m1 21 AGGCGCGTGAAATTCACGCGC
FHA_tnt.FHA2_col_b_m1 21 TAACGTGTTCTACACGCTACC
G2like_tnt.AT1G49560_col_a_m1 11 ATCAAAGATTC
G2like_tnt.AT1G49560_colamp_a_m1 15 AGAATCAAAGATTCT
G2like_tnt.AT2G20400_col_a_m1 29 CGAATATTCCTTTATTTCATCTGTATAAT
G2like_tnt.AT2G20400_colamp_a_m1 15 AAAGAATATTCCAAT
G2like_tnt.AT2G38300_col_a_m1 11 AAAAGAATGTT
G2like_tnt.AT2G40260_col_a_m1 15 TTAAAATATTCTTTT
G2like_tnt.AT2G40260_colamp_a_m1 20 AAAAATTAAAAACATTCTTT
G2like_tnt.AT4G37180_col_a_m1 11 AAAAAGATTCC
G2like_tnt.AT4G37180_colamp_a_m1 11 AAAAAGATTCC
G2like_tnt.AT5G45580_col_a_m1 14 AAAAGAATATTCTT
G2like_tnt.AT5G45580_colamp_a_m1 14 AAAAGGAATCTTCT
G2like_tnt.At1g13300_col_a_m1 15 AGAATCGAAGATTCT
G2like_tnt.At1g25550_col_m1 11 GGAATCTTCTA
G2like_tnt.At1g25550_colamp_a_m1 14 GAATAGAAGATTCC
G2like_tnt.At1g68670_col_m1 13 GAATCAAAGATTC
G2like_tnt.At1g68670_colamp_a_d1 7 AGATTCT
G2like_tnt.At2g01060_col_m1 13 AAAAGAATATTCC
G2like_tnt.At2g01060_colamp_a_m1 15 AAAAAAGAATATTCT
G2like_tnt.At2g03500_col_a_m1 11 AGAATATTCCA
G2like_tnt.At2g03500_colamp_a_m1 14 GAATCTTGGATTCC
G2like_tnt.At3g04030_col_a_m1 14 AAAAGAATCTTCTT
G2like_tnt.At3g04030_colamp_a_m1 15 AGAATATTCCTTTTT
G2like_tnt.At3g12730_col_a_m1 14 AAAGGGAATATTCC
G2like_tnt.At3g12730_colamp_a_m1 14 AAAGGAATATTCTT
G2like_tnt.At3g13040_col_b_m1 9 AAGAAAACA
G2like_tnt.At3g24120_col_a_m1 8 AGAATCTG
G2like_tnt.At3g24120_colamp_a_m1 14 AAGAATATTCCTTT
G2like_tnt.At5g29000_col_a_m1 15 AAAGAATATTCCAAT
G2like_tnt.KAN2_col_a_m1 15 ATTAGAATATTCTTT
G2like_tnt.KAN2_colamp_a_m1 11 AAAGAATATTC
GRF_tnt.AtGRF6_col_a_m1 14 GAAAATGTGTCAGA
GRF_tnt.GRF9_col_a_m1 15 TTGTCAGAAAATACA
GRF_tnt.GRF9_colamp_a_m1 8 TGTCAGAA
GeBP_tnt.AT1G66420_col_a_m1 19 AACCTTATCCATATCTTAT
GeBP_tnt.AT4G00250_col_a_m1 13 AACCTTATCCATT
HB_tnt.ANL2_col_a_m1 11 GCATTAATTAC
HB_tnt.ANL2_colamp_a_m1 11 GCATTAATTGC
HB_tnt.ATHB15_col_a_m1 15 AAAAGTAATGATTAC
HB_tnt.ATHB21_col_a_m1 14 ACACCAATAATTGG
HB_tnt.ATHB21_colamp_a_m1 20 ACACCAATAATTGAATATTA
HB_tnt.ATHB40_col_a_m1 21 AAACCAATAATTGAAAATTAT
HB_tnt.ATHB40_colamp_a_m1 14 ACACCAATAATTGG
HB_tnt.ATHB53_col_a_m1 11 CCAATAATTGA
HB_tnt.ATHB53_colamp_a_m1 15 TCCAATTATTGGTGC
HB_tnt.ATHB5_col_a_m1 11 TCAATAATTGA
HB_tnt.ATHB5_colamp_a_m1 10 CAATGATTGA
HB_tnt.HDG7_col_a_m1 11 GTAATTAATGC
HB_tnt.LMI1_col_a_m1 13 TTCAATTATTGGT
HB_tnt.LMI1_colamp_a_m1 13 TCAATTATTGGTT
HB_tnt.PHV_col_a_m1 15 GTAATCATTACTTTT
HB_tnt.WOX11_col_a_m1 11 AGTTAATTAAT
HMG_tnt.3XHMGBOX1_col_a_m1 21 ACGGCGGAGGAGGCGGCGGAG
HMG_tnt.3XHMGBOX1_colamp_a_m1 15 ACCACCACCACCACC
HSF_tnt.HSF21_col_a_m1 19 TCTAGAAGCTTCTAGAAGC
HSF_tnt.HSF3_col_a_m1 12 GAAGCTTCTAGA
HSF_tnt.HSF3_colamp_a_d1 6 CTAGAA
HSF_tnt.HSF6_col_a_m1 12 GAAGCTTCTAGA
HSF_tnt.HSF7_col_a_m1 14 TTCTAGAAGCTTCT
HSF_tnt.HSF7_colamp_a_m1 14 AGAAGCTTCTAGAA
HSF_tnt.HSFA1E_col_a_m1 13 AGAAGCTTCTAGA
HSF_tnt.HSFA1E_colamp_a_m1 15 AGAAGCTTCTAGAAG
HSF_tnt.HSFA6A_col_a_m1 16 GAAGATTCTAGAAGCT
HSF_tnt.HSFA6A_colamp_a_m1 13 TTCTAGAAGCTTC
HSF_tnt.HSFA6B_col_m1 15 AGAAGCTTCTAGAAG
HSF_tnt.HSFA6B_colamp_a_m1 13 AGAAGCTTCTAGA
HSF_tnt.HSFB3_col_a_m1 15 CTTCTAGAAGCTTCT
HSF_tnt.HSFB3_colamp_a_m1 13 AAGCTTCTAGAAG
HSF_tnt.HSFB4_col_a_m1 15 AGAAGCTTCTAGAAG
HSF_tnt.HSFC1_col_a_m1 11 CTAGAAGCTTC
HSF_tnt.HSFC1_colamp_a_m1 17 AGCTTCTAGAAGCTTCT
Homeobox_ecoli.HAT2_col_v31_m1 11 ATTAATCATTA
Homeobox_tnt.ATHB13_col_a_m1 11 TCAATAATTAA
Homeobox_tnt.ATHB13_colamp_a_m1 11 TCAATAATTGA
Homeobox_tnt.ATHB18_col_a_m1 11 TCAATCATTGG
Homeobox_tnt.ATHB18_colamp_a_m1 11 CCAATGATTGG
Homeobox_tnt.ATHB20_col_a_m1 11 TCAATAATTGA
Homeobox_tnt.ATHB20_colamp_a_m1 11 TCAATTATTGA
Homeobox_tnt.ATHB6_col_a_m1 11 CAATCATTTAT
Homeobox_tnt.ATHB6_colamp_a_m1 11 TCAATAATTGA
Homeobox_tnt.ATHB7_col_a_m1 13 TCAATGATTGATT
Homeobox_tnt.EDT1_col_m1 11 GCATTAAATGC
Homeobox_tnt.HAT1_col_a_m1 15 CTAATGATTGGTAAT
Homeobox_tnt.HAT1_colamp_a_m1 11 CCAATGATTAA
Homeobox_tnt.HAT22_col_a_m1 10 ACTAATCATT
Homeobox_tnt.HAT2_colamp_a_m1 11 TTAATCATTTA
Homeobox_tnt.HAT5_col_a_m1 11 TCAATAATTGA
Homeobox_tnt.HAT5_colamp_a_m1 14 ATCAATAATTGAAT
Homeobox_tnt.HDG1_col100_a_m1 11 GTAATTAATGC
Homeobox_tnt.HDG1_colamp_a_m1 11 GTAATTAATGC
Homeobox_tnt.PDF2_col_m1 15 AAAAGAATATTCCAA
Homeobox_tnt.WUS1_col_a_m1 11 TCATTCATTCA
Homeobox_tnt.WUS1_colamp_a_m1 11 TGAATGATTGA
LIM_tnt.WLIM2A_col_a_m1 7 TCAAATC
LOBAS2_tnt.AS2_col_a_m1 21 TCTCCGCCGCCTTCTCCGCCG
LOBAS2_tnt.ASL18_col_a_m1 15 CCGGAAAATCCGGAG
LOBAS2_tnt.ASL18_colamp_a_m1 16 CCGGATTTTCCGGCGA
LOBAS2_tnt.LBD13_col_a_m1 17 CGGCGGAAATTGCGGCG
LOBAS2_tnt.LBD13_colamp_a_m1 15 CGGCGGAAATTGCGG
LOBAS2_tnt.LBD18_col_a_m1 19 TTTCCTCCGGATTTTCCGG
LOBAS2_tnt.LBD18_colamp_a_m1 15 CGGATTTTCCGGAGA
LOBAS2_tnt.LBD19_col_a_m1 15 CCGGAAAATCCGGAG
LOBAS2_tnt.LBD19_colamp_a_d1 7 CCGGAAA
LOBAS2_tnt.LBD23_col_a_m1 15 AGCGTATTTTACGCT
LOBAS2_tnt.LBD23_colamp_a_m1 15 AGCGTAAAATACGCT
LOBAS2_tnt.LBD2_col_a_m1 15 CCGAAAAAATCGGAG
LOBAS2_tnt.LBD2_colamp_a_m1 15 CCGAAAAAATCGGAG
LOBAS2_tnt.LOB_col_a_m1 21 TCCGCCGCCGCCTCCGCCGCC
MADS_tnt.AGL13_col_b_m1 18 TTACCAAAAATGGAAAAT
MADS_tnt.AGL15_col_a_m1 19 CTTTCCTTTTTTGGAAAGT
MADS_tnt.AGL15_colamp_a_m1 21 AACTTTCCTTTTTTGGAAAGT
MADS_tnt.AGL16_col_a_m1 15 TTTCCTTTTTTGGAA
MADS_tnt.AGL16_colamp_a_m1 21 CTTTCCTTTTTTGGAAAGTTT
MADS_tnt.AGL25_col_a_m1 18 ACTTTCCATTTTTGGAAA
MADS_tnt.AGL25_colamp_a_m1 15 CTTTCCATTTTTGGA
MADS_tnt.AGL42_col_a_m1 7 CATCATC
MADS_tnt.AGL55_col_a_m1 6 TCACCA
MADS_tnt.AGL63_col_a_m1 15 TTCCAAAAATGGAAA
MADS_tnt.AGL6_col_a_m1 19 TTTCCAAAAAAGGAAAAAA
MADS_tnt.FEM111_col_a_m1 6 TGGTGA
MADS_tnt.SVP_col_v3b_m1 15 ACTTTCCTTTTTTGG
MADS_tnt.SVP_colamp_v3b_m1 15 TTCCCAAAAAGGAAA
MYB_tnt.ATY13_col_a_m1 15 CAACTACCAACTACC
MYB_tnt.ATY13_colamp_a_m1 15 CAACTACCAACCACC
MYB_tnt.ATY19_col_a_m1 21 CTCCAAAATCTCCACCAACCA
MYB_tnt.BOS1_col_a_m1 15 TTGGTAAAGTTAGGT
MYB_tnt.MS188_col_a_m1 15 AAAAATTAGGTGAAA
MYB_tnt.MS188_colamp_a_m1 15 AAAAAATTAGGTGAA
MYB_tnt.MYB101_col_a_m1 15 AACCGTAACCGAATT
MYB_tnt.MYB101_colamp_a_m1 15 AACTGTAACCGAATT
MYB_tnt.MYB105_col_a_m1 13 TTAATTACCGTTA
MYB_tnt.MYB105_colamp_a_m1 17 AGTTAAATAACGGTATT
MYB_tnt.MYB107_col_a_m1 18 AAGGTAGGTGAACTAATT
MYB_tnt.MYB107_colamp_a_m1 14 TAGTTCACCTACCT
MYB_tnt.MYB10_col_a_m1 16 TATTGTGGTAGGTGAA
MYB_tnt.MYB10_colamp_a_m1 14 TTCCACCTACCATT
MYB_tnt.MYB113_col_a_m1 11 AAGTCAGTTAT
MYB_tnt.MYB116_col_a_m1 15 AAAAAAAGTTAGGCA
MYB_tnt.MYB116_colamp_a_m1 13 AAAGTTAGGCAGA
MYB_tnt.MYB118_col_a_m1 17 AAAATAACCGTTACAAA
MYB_tnt.MYB118_colamp_a_m1 15 AAATTGTAACGGTTA
MYB_tnt.MYB119_col_a_m1 11 TAACCGTTACA
MYB_tnt.MYB119_colamp_a_m1 15 AAATTGTAACGGTTA
MYB_tnt.MYB121_col_a_m1 14 AAAGTTAGGTATAA
MYB_tnt.MYB13_col_a_m1 15 GTAGTGGTTGGTGAA
MYB_tnt.MYB13_colamp_a_m1 18 TCCACCAACCACAATCAT
MYB_tnt.MYB17_colamp_a_m1 15 AAGTTGGTAGGTGAG
MYB_tnt.MYB1_col_a_m1 19 ATTACCGTTAAAGTTGTTA
MYB_tnt.MYB23_col_a_m1 11 AAGTTTGTTGG
MYB_tnt.MYB27_col_a_m1 15 AAAAAATTAGGTAAA
MYB_tnt.MYB27_colamp_a_m1 16 TTTTACCTAATTTTTT
MYB_tnt.MYB30_col_a_m1 15 TTCCCAACCACCAAC
MYB_tnt.MYB30_colamp_a_m1 15 CAACTCCCAACTACC
MYB_tnt.MYB33_col_a_m1 11 ATAACCGAATT
MYB_tnt.MYB39_col_a_m1 14 AAAATTAGGTGAAA
MYB_tnt.MYB39_colamp_a_m1 21 TTTATTAAAAGTTAGGTGAAA
MYB_tnt.MYB3R1_col_a_m1 15 AAATATGACCGTTAG
MYB_tnt.MYB3R1_colamp_a_m1 13 AATATAACCGTTA
MYB_tnt.MYB3R4_col_a_m1 15 AAATATAACCGTTGG
MYB_tnt.MYB3R5_col_a_m1 15 AAAATATGACCGTTG
MYB_tnt.MYB40_col_a_m1 13 TTTACCTACCTTT
MYB_tnt.MYB41_col_a_m1 15 TTTGTTCACCTAACT
MYB_tnt.MYB43_col_a_m1 13 AAGGTAGGTGAAA
MYB_tnt.MYB44_col_m1 19 TTTACGGTTATTTCCGTTA
MYB_tnt.MYB44_colamp_a_m1 11 AATAACCGTAA
MYB_tnt.MYB49_col_a_m1 15 TTGTTCACCTACCTT
MYB_tnt.MYB49_colamp_a_m1 14 AAAGTTAGGTGAAA
MYB_tnt.MYB4_col200_a_m1 15 AATAAGTTTGGTAAA
MYB_tnt.MYB51_col_a_m1 21 TTTCAAAATTTTCACCTACCT
MYB_tnt.MYB52_col_a_m1 11 CTTTACCGTTA
MYB_tnt.MYB55_col_m1 14 CCTCAACCACCACC
MYB_tnt.MYB55_colamp_a_m1 15 TGGTTGGTGGAGTTA
MYB_tnt.MYB56_col_a_m1 15 ATAAATAACGGTATT
MYB_tnt.MYB56_colamp_a_m1 15 TAAATAACGGTATTT
MYB_tnt.MYB57_col_a_m1 14 TTTACCTAACTTTT
MYB_tnt.MYB57_colamp_a_d1 7 ACCTAAC
MYB_tnt.MYB58_col_a_m1 15 TGTGGTTGGTGAAAC
MYB_tnt.MYB58_colamp_a_m1 21 ATTGTTGTGGTTGGTGAAACA
MYB_tnt.MYB60_col_m1 19 CTTTTCCAACCACCTTTTT
MYB_tnt.MYB61_col_a_m1 15 TCCACCTACCACCAC
MYB_tnt.MYB61_colamp_a_m1 13 CTCCACCTACCAT
MYB_tnt.MYB62_col_a_m1 15 AAAAAAGTTAGGTAG
MYB_tnt.MYB62_colamp_a_m1 13 TCTACCTAACTTT
MYB_tnt.MYB63_col_a_m1 21 CAACTACTCCACCAACCCCCA
MYB_tnt.MYB65_col200_a_m1 13 ACCGTAACCGTAA
MYB_tnt.MYB65_colamp_a_m1 15 ATAACCGTAACTATA
MYB_tnt.MYB67_col_a_m1 21 GTAGTGGTAATGTTAGGTGGA
MYB_tnt.MYB70_col_a_m1 14 TAACCGTAATAACC
MYB_tnt.MYB73_col_a_m1 11 TAACCGTAATA
MYB_tnt.MYB74_col_m1 14 TTTTACCTAACTAT
MYB_tnt.MYB74_colamp_a_m1 14 AAAGGTAGGTGAAA
MYB_tnt.MYB77_col_a_m1 15 CGGTTATGACGGTTA
MYB_tnt.MYB77_colamp_a_m1 20 CGTTTGATACGGTTACGGTT
MYB_tnt.MYB81_col_a_m1 11 GTAACCGAATT
MYB_tnt.MYB81_colamp_a_m1 14 ACTGTAACCGTTTT
MYB_tnt.MYB83_col_a_m1 11 GTGGTTGGTGG
MYB_tnt.MYB83_colamp_a_m1 15 TGTAGTGGTTGGTGG
MYB_tnt.MYB88_col_a_m1 15 ACCACACGCGCCTCC
MYB_tnt.MYB88_colamp_a_m1 13 GGAGGAGCGTGTG
MYB_tnt.MYB92_100ng20cy_b_m1 10 GTTAGGTAAA
MYB_tnt.MYB92_colamp_a_m1 19 AAATAAGTTCACCTACCAT
MYB_tnt.MYB93_col_a_m1 21 TTGTTTAAGGTAGGTGAACAA
MYB_tnt.MYB93_colamp_a_m1 15 ATTAGTTCACCTACC
MYB_tnt.MYB94_col_b_m1 19 TAGAAGGTAGTTGGGAAAT
MYB_tnt.MYB96_col_b_m1 18 TAAGGTAGTTGGTAGTTG
MYB_tnt.MYB96_colamp_a_m1 21 TACACCTACCAACCACCTTCT
MYB_tnt.MYB98_col_a_m1 15 AAAATGTAACGGATA
MYB_tnt.MYB99_col_a_m1 13 TCTCACCTACCTC
MYB_tnt.MYB99_colamp_a_m1 11 TTCACCTACCT
MYBrelated_tnt.AT1G18960_col_a_m1 22 CAACATCATCAACAACATCACC
MYBrelated_tnt.AT1G72740_col_a_m1 15 CCTAAACCCTAAATC
MYBrelated_tnt.AT1G72740_colamp_a_m1 21 AGTTTTAGATTTAGGGTTTTG
MYBrelated_tnt.AT3G10113_col_a_m1 15 TAAAAAAATATCTTA
MYBrelated_tnt.AT3G10580_col_a_m1 15 AATTAGGATAAGGTT
MYBrelated_tnt.AT3G10580_colamp_a_m1 15 CCGAAAAAATCGGAA
MYBrelated_tnt.AT4G12670_col_a_m1 29 CTAAACCCTAAACCCTAAACCCTAAACCC
MYBrelated_tnt.AT4G12670_colamp_a_m1 21 CCTAAACCCTAAACCCTAAAC
MYBrelated_tnt.AT5G56840_col_a_m1 15 AACCTTATCCATAAA
MYBrelated_tnt.AT5G56840_colamp_a_m1 16 TATAACCTTATCCATA
MYBrelated_tnt.AT5G61620_col_a_m1 15 AATTTGGATAAGATT
MYBrelated_tnt.AT5G61620_colamp_a_m1 11 TCTTATCCAAA
MYBrelated_tnt.At1g19000_col_a_m1 14 AAATGGATAAGGTT
MYBrelated_tnt.At1g19000_colamp_a_m1 14 AACCTTATCCATTT
MYBrelated_tnt.At1g49010_col_a_m1 15 ATTAACCTTATCCTC
MYBrelated_tnt.At1g49010_colamp_a_m1 15 AATGTGGATAAGGTT
MYBrelated_tnt.At1g74840_col100_a_m1 11 AATGGATAAGG
MYBrelated_tnt.At1g74840_colamp_a_m1 14 AACCTTATCCATTT
MYBrelated_tnt.At2g38090_col_a_m1 21 AAAAAATTGGATAAGGATAAG
MYBrelated_tnt.At3g09600_col_a_m1 12 AGATATTTTTTT
MYBrelated_tnt.At3g09600_colamp_a_m1 11 AGATATTTTTT
MYBrelated_tnt.At3g11280_col_a_m1 14 ATCCTTATCTTCAT
MYBrelated_tnt.At3g11280_colamp_a_m1 18 TATAATCTTATCTTTATA
MYBrelated_tnt.At4g01280_col_a_m1 11 AGATATTTTTT
MYBrelated_tnt.At4g01280_colamp_a_m1 11 AGATATTTTTT
MYBrelated_tnt.At5g05790_col_a_m1 15 AACCTTATCTTCATC
MYBrelated_tnt.At5g08520_col_b_m1 13 AATATGGATAAGG
MYBrelated_tnt.At5g08520_colamp_a_m1 11 CCTTATCCTTA
MYBrelated_tnt.At5g47390_col_b_m1 15 ATAACCTTATCCATA
MYBrelated_tnt.At5g47390_colamp_a_m1 14 ATTTGGATAAGGTT
MYBrelated_tnt.At5g52660_col_a_m1 11 AGATATTTTTT
MYBrelated_tnt.At5g52660_colamp_a_m1 12 AGATATTTTTTT
MYBrelated_tnt.At5g58900_col_a_m1 15 TATGGATAAGGTTAT
MYBrelated_tnt.At5g58900_colamp_a_m1 15 AATCTTATCTTCATA
MYBrelated_tnt.EPR1_col_m1 12 AAAAATATCTTA
MYBrelated_tnt.EPR1_colamp_a_m1 11 AAAAAATATCT
MYBrelated_tnt.LCL1_col_m1 10 AGATATTTTT
MYBrelated_tnt.LCL1_colamp_a_m1 11 AGATATTTTTT
MYBrelated_tnt.LHY1_col_a_m1 10 AGATATTTTT
MYBrelated_tnt.LHY1_colamp_a_m1 11 AGATATTTTTA
MYBrelated_tnt.RVE1_col_a_m1 14 AAAAAAATATCTTA
MYBrelated_tnt.RVE1_colamp_a_m1 10 AGATATTTTT
MYBrelated_tnt.TBP3_col_a_m1 19 AAAATTAAACCCTAATTTT
MYBrelated_tnt.TBP3_colamp_a_m1 19 GAATTAGGGTTTAGGTTTT
MYBrelated_tnt.TRP1_col_m1 23 AAACCCTAAACCCTAAACCCTAA
MYBrelated_tnt.TRP2_col_a_m1 20 AAACCCTAAACCCTAAACCC
MYBrelated_tnt.TRP2_colamp_a_m1 21 AAACCCTAAACCCTAAACCCT
NAC_tnt.ANAC004_col_a_m1 14 CTTCTTCTACAAGT
NAC_tnt.ANAC004_colamp_a_m1 21 AACTTGTTCAACAAGTTTCCT
NAC_tnt.ANAC005_col_a_m1 19 TTACTTCTTTTACAAGTTT
NAC_tnt.ANAC011_col_a_m1 21 GTTACTTGTAGCAGAAGCAAC
NAC_tnt.ANAC013_col_a_m1 16 CTTGGGGAACAAGTAA
NAC_tnt.ANAC013_colamp_a_m1 17 ATTACTTGGAGAACAAG
NAC_tnt.ANAC016_col_a_m1 15 CTTGCAGAACAAGCA
NAC_tnt.ANAC016_colamp_a_m1 15 CTTGGAGAACAAGTA
NAC_tnt.ANAC017_col_m1 19 AGGTTTCTTGTTGAACAAG
NAC_tnt.ANAC017_colamp_v31_m1 17 TTACTTGGAGAACAAGG
NAC_tnt.ANAC020_col_v31_m1 21 TTGCTTGTTCTACACGTTACC
NAC_tnt.ANAC028_col_a_m1 16 CTTGTTCTACAAGTAA
NAC_tnt.ANAC034_col_m1 19 CCTGTTTTACACGGCATCT
NAC_tnt.ANAC038_col_a_m1 18 TTACGTGTGGAACAAGTA
NAC_tnt.ANAC038_colamp_a_m1 21 GGTAACTTGTAATACAAGAAA
NAC_tnt.ANAC042_col_a_m1 20 TGCCGTGATATCTACGCTAC
NAC_tnt.ANAC045_col_a_m1 16 CTTGTAGAACAAGCAA
NAC_tnt.ANAC045_colamp_a_m1 16 CTTGTAGAACAAGCAA
NAC_tnt.ANAC046_col_m1 21 TAACGTGTAGAACAAGTAACC
NAC_tnt.ANAC046_colamp_a_m1 17 CTTGTTCCACACGTTAC
NAC_tnt.ANAC047_col_m1 15 AAGTTACGTGTAAAA
NAC_tnt.ANAC047_colamp_a_d1 5 CACGT
NAC_tnt.ANAC050_col_v3a_m1 16 CTTGTGTCACAAGTAA
NAC_tnt.ANAC050_colamp_a_m1 15 TACTTGTGTAACAAG
NAC_tnt.ANAC053_col_m1 17 TTTCTTGTGGAACAAGT
NAC_tnt.ANAC053_colamp_a_m1 16 CTTGTTCCACAAGAAA
NAC_tnt.ANAC055_col_m1 21 TTTCAAATTTTACACGTAACT
NAC_tnt.ANAC057_col_a_m1 17 TACGTGTGGAACAAGCA
NAC_tnt.ANAC057_colamp_a_m1 21 AGGTTGCTTGTAGCACAAGTA
NAC_tnt.ANAC058_col_a_m1 16 CTTGTGCAACACGTAA
NAC_tnt.ANAC058_colamp_a_m1 18 TTCTTGTTTTACAAGTAA
NAC_tnt.ANAC062_col_m1 15 CTTAGTGATTAAGTA
NAC_tnt.ANAC062_colamp_a_m1 18 CTTAATCAGTAAGTAATC
NAC_tnt.ANAC070_col_m1 21 GGTAACGTAAAATACAAGCAA
NAC_tnt.ANAC070_colamp_a_m1 16 CTTGAATTTCACGCAA
NAC_tnt.ANAC071_col_a_m1 15 TACTTGAAGATGAAG
NAC_tnt.ANAC071_colamp_a_m1 15 CTTCATCTTCAAGTA
NAC_tnt.ANAC075_col_a_m1 15 AGCGTGAAGAAGAAG
NAC_tnt.ANAC079_col_m1 21 GTTACGTGTAGAACAAGTAAC
NAC_tnt.ANAC079_colamp_a_m1 16 CTTGTTTAACACGCAA
NAC_tnt.ANAC083_col_v3a_m1 19 TTACGTGTTTTACACGTAA
NAC_tnt.ANAC083_colamp_a_m1 15 CGTGTAAAACACGCA
NAC_tnt.ANAC087_col_v3a_m1 19 TAACGTGTAGAACAAGTAA
NAC_tnt.ANAC087_colamp_a_m1 21 GGTAACGTGTGGAACAAGGAA
NAC_tnt.ANAC092_col_v3a_m1 15 CGTGTAAAACAAGCA
NAC_tnt.ANAC092_colamp_a_m1 20 TTACTTGTTCTACACGTAAC
NAC_tnt.ANAC094_col_a_m1 18 TGCCGTGATCTTCACGTT
NAC_tnt.ANAC096_col_m1 16 CTTGAAGATGAAGCAA
NAC_tnt.ANAC096_colamp_a_m1 18 CTTGAACTTCAAGTAACC
NAC_tnt.ANAC103_col_a_m1 21 GGTAACTTGCTGAACAAGTTA
NAC_tnt.ANAC103_colamp_a_m1 16 TTGTTCAACAAGTTAC
NAC_tnt.AT1G19040_col_a_m1 16 TAACTTGGGGAGCAAG
NAC_tnt.AT3G12910_col_a_m1 17 TGCCGTGAATTCGACGG
NAC_tnt.ATAF1_col_a_m1 22 TACGTGTATAATTTGTCTTCTT
NAC_tnt.ATAF1_colamp_a_d1 5 ACGTA
NAC_tnt.CUC1_col_v31_m1 16 CGTGTTGAACAAGTAA
NAC_tnt.CUC1_colamp_a_m1 19 AGGTAACGTGTTGAACAAG
NAC_tnt.CUC2_col_m1 19 CGTGTGGAACAAGTAACCT
NAC_tnt.CUC2_colamp_a_m1 16 TAACGTGTAAAACAAG
NAC_tnt.CUC3_col_a_m1 18 ACGTGTAAAACAAGCAAC
NAC_tnt.CUC3_colamp_a_m1 16 CTTGTTCTACACGTTA
NAC_tnt.NAC2_col_v3a_m1 17 CTTGTTCCACAAGAAAC
NAC_tnt.NAC2_colamp_a_m1 16 CTTGTTCCACAAGAAA
NAC_tnt.NAM_col_v3a_m1 19 TTACGTGTTTTACACGTAA
NAC_tnt.NAM_colamp_a_m1 11 ACACGTAACTT
NAC_tnt.NAP_col_v3a_m1 11 ACACGTAACTT
NAC_tnt.NAP_colamp_a_m1 17 TTACGTGTATAACACGG
NAC_tnt.NST1_col_v31_m1 17 TAACGTAAAATTCAAGC
NAC_tnt.NST1_colamp_a_m1 15 CGTGAAATTCAAGCA
NAC_tnt.NTL8_col_m1 19 GTTTCTTCATCTTCAAGTA
NAC_tnt.NTM1_col_a_m1 15 ACTTGTTCAATAAGT
NAC_tnt.NTM1_colamp_a_m1 21 AAAAAAAAAGAAAAAGTAAAA
NAC_tnt.NTM2_col_b_m1 15 TACTTCTTCAATAAG
NAC_tnt.SMB_col_a_m1 21 GGTAGCGTGAAATTCAAGCAA
NAC_tnt.SMB_colamp_a_m1 16 CGTGAAATTCAAGCAA
NAC_tnt.SND2_col_a_m1 15 CTTCTTCTTCACGCT
NAC_tnt.SND2_colamp_a_m1 15 AGCGTGATGAAGAAG
NAC_tnt.SND3_col_b_m1 15 AGCGTGTGGAACAAG
NAC_tnt.SND3_colamp_a_m1 22 GTAACTTCTTCCTCACGCTACC
NAC_tnt.VND1_col_a_m1 13 CTTGTATTTCACG
NAC_tnt.VND2_col_a_m1 15 CTTGAAAAACAAGCA
NAC_tnt.VND2_colamp_a_m1 23 TTGCTTGTATTTCACGTTACCTT
NAC_tnt.VND3_col_m1 16 CTTGAAAAACAAGCAA
NAC_tnt.VND3_colamp_a_m1 17 CTTGAAAAACAAGCAAC
NAC_tnt.VND4_col_m1 15 CGTAAAAAACAAGCA
NAC_tnt.VND4_colamp_a_m1 16 CGTAAAAAACAAGCAA
NAC_tnt.VND6_col_v31_m1 21 TTGCTTGTATTTTACGCAACC
NAC_tnt.VND6_colamp_a_m1 15 TGCTTGTTTTTCAAG
ND_tnt.AGL95_col_a_m1 15 AGAAGCTTCTAGAAG
ND_tnt.ASHR1_col_a_m1 15 TCATCATCACCATCA
ND_tnt.AT1G63040_col_a_m1 6 TTGAAA
ND_tnt.AT2G28920_col_a_m1 10 AAAAATATCT
ND_tnt.FRS9_col_a_m1 21 CTCTCTCTCTCTCTCTCTCTC
ND_tnt.FRS9_colamp_a_m1 30 TTGAATATTATTGGTTTAGAATTATAAAAA
NLP_tnt.AtNLP4_col_b_m1 15 GCAGCAGCAGCAGCA
Orphan_tnt.AT1G23810_col_a_m1 17 TTCTAGAAGCTTCTATA
Orphan_tnt.AT1G24250_col_a_m1 18 TCCCAACTACCAACTACC
Orphan_tnt.BBX31_col_a_m1 15 AAAAAGTAAAAAAAA
PLATZ_tnt.AT2G01818_col_a_m1 15 AGAAGCTTCTAGAAG
RAV_tnt.RAV1_col_m1 17 CAGATAATTTCTGTTGT
RAV_tnt.RAV1_colamp_a_m1 21 TTTTCAGGTGATTTCTGTTGT
REMB3_tnt.AT2G31460_col_a_m1 12 AAAGAAATGATA
REM_tnt.REM19_col_a_m1 15 AAAAAAAAAAAAAAA
REM_tnt.REM19_colamp_a_m1 21 ATGAAAAAAAAAAAAAAAAAA
RWPRK_tnt.NLP7_col_a_m1 15 ATTTGGCTTTTCGGA
RWPRK_tnt.RKD2_col_a_m1 19 GTGACGTTTCATCTTCCTC
RWPRK_tnt.RKD2_colamp_a_m1 15 GGAAGATGAAACGTC
S1Falike_tnt.AT3G09735_col_a_m1 15 AGAAGCTTCTAGAAG
SBP_tnt.SPL11_col100_a_m1 11 AAAAAGTACAA
SBP_tnt.SPL13_col_a_m1 11 ATTGTACGGAT
SBP_tnt.SPL14_col_a_m1 11 TCCGTACAATT
SBP_tnt.SPL15_col_a_m1 14 AAATTGTACGGACA
SBP_tnt.SPL15_colamp_a_m1 15 ATTTGTCCGTACAAT
SBP_tnt.SPL1_col_a_m1 11 AATTGTACGGA
SBP_tnt.SPL1_colamp_a_m1 10 ATCCGTACAA
SBP_tnt.SPL3_col_a_m1 8 TCCGTACA
SBP_tnt.SPL3_colamp_a_m1 13 AATTGTACGGACA
SBP_tnt.SPL5_col_a_m1 12 AATTGTACGGAC
SBP_tnt.SPL5_colamp_a_m1 10 TTGTACGGAT
SBP_tnt.SPL9_col_a_m1 11 ATTGTACGGAT
SBP_tnt.SPL9_colamp_a_m1 11 AATTGTACGGA
SRS_tnt.SRS7_col_a_m1 23 AAACCCTAAACCCTAAACCCTAA
SRS_tnt.SRS7_colamp_a_m1 30 CCCTAAACCCTAAACCCTAAACCCTAAACC
TCP_tnt.At1g69690_col_a_m1 13 TGGTGGGCCCCAC
TCP_tnt.At1g69690_colamp_a_m1 13 TGGTGGGCCCCAC
TCP_tnt.At1g72010_col_m1 13 ATGTGGGCCCCAC
TCP_tnt.At1g72010_colamp_a_m1 13 ATGTGGGCCCCAC
TCP_tnt.At2g45680_col_b_m1 21 CCATTTGCCGTGGGTCCCACC
TCP_tnt.At2g45680_colamp_a_m1 11 GTGGGACCCAC
TCP_tnt.At5g08330_col_a_m1 14 TGTGGGCCCCACTT
TCP_tnt.At5g08330_colamp_a_m1 12 TGTGGGCCCCAC
TCP_tnt.PTF1_col_a_m1 13 GTGGGGACCACAA
TCP_tnt.PTF1_colamp_a_m1 13 TTGTGGTCCCCAC
TCP_tnt.TCP14_col_b_m1 20 ACAGAGGATGTGGGACCCAC
TCP_tnt.TCP16_col_a_m1 11 GTGGGGTCCAC
TCP_tnt.TCP16_colamp_a_m1 11 TGGGTCCACCA
TCP_tnt.TCP17_col_a_m1 11 GTGGTCCCCAC
TCP_tnt.TCP17_colamp_a_m1 11 GTGGGGACCAC
TCP_tnt.TCP1_col_a_m1 30 TGTGGGCCCCACCTCCTCTCTTGGGCCTAT
TCP_tnt.TCP20_col_a_m1 21 AAAAAAGCATGTGGGACCCAC
TCP_tnt.TCP20_colamp_a_m1 12 GTGGGGCCCACC
TCP_tnt.TCP24_col_m1 12 GTTGGGACCACA
TCP_tnt.TCP24_colamp_a_m1 11 GTGGGGACCAC
TCP_tnt.TCP3_col_m1 13 GTTGGGACCACAT
TCP_tnt.TCP3_colamp_a_m1 12 GTTGGGACCACA
TCP_tnt.TCP7_col_a_m1 11 GTGGGACCCAC
Trihelix_tnt.AT1G76870_col_b_m1 14 AAACAAAACCGGAA
Trihelix_tnt.AT1G76880_col_a_m1 16 ACGGTAAAAAATTAAA
Trihelix_tnt.AT2G33550_col_a_m1 18 TAAAAAATATACCCTAAA
Trihelix_tnt.AT2G33550_colamp_a_m1 14 AAAAATGCCCTTAA
Trihelix_tnt.AT3G10030_col_a_m1 14 AGTTAACGGCGTTA
Trihelix_tnt.AT3G10030_colamp_a_m1 15 AGTTAACGGCGTTAA
Trihelix_tnt.AT3G25990_col_a_m1 21 AACCATGGTTAAATTTTAACC
Trihelix_tnt.AT3G25990_colamp_a_m1 20 TTTTAACTATGGTTAAGTTT
Trihelix_tnt.AT3G58630_col_a_m1 15 AAATCTCCGGCGACG
Trihelix_tnt.AT3G58630_colamp_a_m1 15 AATTCTCCGGCGACG
Trihelix_tnt.AT5G05550_col_a_m1 15 TTTCTCCGGCGATGA
Trihelix_tnt.AT5G05550_colamp_a_m1 15 TATCTCCGGCGACGA
Trihelix_tnt.AT5G47660_col_a_m1 15 TTTTTTTTTTACCGT
Trihelix_tnt.AT5G47660_colamp_a_m1 15 TAACAACGGTAAAAA
Trihelix_tnt.At3g14180_col_m1 11 TCGCCGGAAAA
Trihelix_tnt.GT1_col_a_m1 19 AATTAACCATGGTTAAAAT
Trihelix_tnt.GT2_col_a_m1 14 TTTTTTACCGTTTT
Trihelix_tnt.GT2_colamp_a_m1 11 ACGGTAAAAAA
Trihelix_tnt.GT3a_col_a_m1 17 AACACGTGTTAAATTTG
Trihelix_tnt.GTL1_col_a_m1 10 ACGGTAAAAA
Trihelix_tnt.GTL1_colamp_a_m1 10 ACGGTAAAAA
WRKY_tnt.WRKY11_col_a_m1 14 AGCGTTGACTTTTT
WRKY_tnt.WRKY14_col_a_m1 13 AAAAGTCAACGAT
WRKY_tnt.WRKY14_colamp_a_m1 13 AAAAGTCAACGCT
WRKY_tnt.WRKY15_col_b_m1 11 AAAAGTCAACG
WRKY_tnt.WRKY15_colamp_a_m1 12 GCGTTGACTTTT
WRKY_tnt.WRKY17_col_a_m1 14 AAAAAGTCAACGCC
WRKY_tnt.WRKY17_colamp_a_m1 13 AAAAAGTCAACGC
WRKY_tnt.WRKY18_col_a_m1 11 AAAAGTCAACG
WRKY_tnt.WRKY18_colamp_a_m1 13 CGTTGACTTTTTT
WRKY_tnt.WRKY20_col_a_m1 13 AACGTTGACTATT
WRKY_tnt.WRKY21_col_m1 11 AAAAGTCAACG
WRKY_tnt.WRKY21_colamp_a_m1 13 AGCGTTGACTTTT
WRKY_tnt.WRKY22_col_m1 13 AAAAGTCAACGAT
WRKY_tnt.WRKY22_colamp_a_m1 13 ATCGTTGACTTTT
WRKY_tnt.WRKY24_col_a_m1 14 TCGTTGACTTTTTT
WRKY_tnt.WRKY24_colamp_a_m1 13 ATCGTTGACTTTT
WRKY_tnt.WRKY25_col_a_m1 11 AAAAGTCAACG
WRKY_tnt.WRKY25_colamp_a_m1 15 AGCGTTGACTTTTTT
WRKY_tnt.WRKY26_col_a_m1 13 AAAAGTCAACGGT
WRKY_tnt.WRKY26_colamp_a_m1 11 CGTTGACTTTT
WRKY_tnt.WRKY27_col_a_m1 13 ATCGTTGACTTTT
WRKY_tnt.WRKY27_colamp_a_m1 13 AAAAGTCAACGAT
WRKY_tnt.WRKY28_col_a_m1 13 ATCGTTGACTTTT
WRKY_tnt.WRKY28_colamp_a_m1 11 AAAAGTCAACG
WRKY_tnt.WRKY29_col_a_m1 11 AAAAGTCAACG
WRKY_tnt.WRKY29_colamp_a_m1 13 AAAAGTCAACGAT
WRKY_tnt.WRKY30_col_a_m1 11 AAAGTCAACGC
WRKY_tnt.WRKY30_colamp_a_m1 13 AAAAGTCAACGCT
WRKY_tnt.WRKY31_col_a_m1 19 GGATAAAAAAAAGTCAACG
WRKY_tnt.WRKY31_colamp_a_m1 13 AGCGTTGACTTTT
WRKY_tnt.WRKY33_col_a_m1 11 AAAAGTCAACG
WRKY_tnt.WRKY3_col_a_m1 11 AAAAGTCAACG
WRKY_tnt.WRKY40_col_m1 15 AACGTTGACTTTTTT
WRKY_tnt.WRKY40_colamp_a_m1 13 AAAAAAGTCAACG
WRKY_tnt.WRKY42_col_a_m1 21 TTTTAATTAGCGTTGACTTTT
WRKY_tnt.WRKY42_colamp_a_m1 20 AAATAAAAGTCAACGCTAAT
WRKY_tnt.WRKY43_col_a_m1 14 GTCGTTGACTTTTT
WRKY_tnt.WRKY43_colamp_a_m1 15 AAAAAAAGTCAACGA
WRKY_tnt.WRKY45_col_a_m1 12 CGTTGACTTTTT
WRKY_tnt.WRKY45_colamp_a_m1 11 AAAAGTCAACG
WRKY_tnt.WRKY46_col_a_m1 11 CGTTGACTTTG
WRKY_tnt.WRKY46_colamp_a_m1 11 AAAAGTCAACG
WRKY_tnt.WRKY47_col_a_m1 14 ACCGGCGTTGACTT
WRKY_tnt.WRKY47_colamp_a_m1 19 AATTATCGTTGACTTTTTT
WRKY_tnt.WRKY50_col_a_m1 13 CTTTGACTTTTTT
WRKY_tnt.WRKY50_colamp_a_m1 11 AAAAGTCAAAG
WRKY_tnt.WRKY55_col_a_m1 12 AGCGTTGACTTT
WRKY_tnt.WRKY59_col_a_m1 12 AAAAAGTCAAAG
WRKY_tnt.WRKY65_col_a_m1 11 AAAAGTCAACG
WRKY_tnt.WRKY65_colamp_a_m1 12 GCGTTGACTTTT
WRKY_tnt.WRKY6_col_a_m1 19 CGTTGACTTTTTTTAACAT
WRKY_tnt.WRKY6_colamp_a_m1 15 AGCGTTGACTTTTTT
WRKY_tnt.WRKY70_col_m1 13 AGCGTTGACTTTT
WRKY_tnt.WRKY71_col_a_m1 11 AAAAGTCAACG
WRKY_tnt.WRKY75_col_a_m1 13 AAAAGTCAACGAC
WRKY_tnt.WRKY75_colamp_a_m1 13 ATCGTTGACTTTT
WRKY_tnt.WRKY7_col_m1 14 AGCGTTGACTTTTT
WRKY_tnt.WRKY7_colamp_a_m1 21 TAAAAGAAAAAAAGTCAACGA
WRKY_tnt.WRKY8_col_m1 15 AAAAAAGTCAACGAT
WRKY_tnt.WRKY8_colamp_a_m1 15 AATCGTTGACTTTTT
ZFHD_tnt.ATHB23_col_b_m1 22 AATCTTAATTAATTAATAAATT
ZFHD_tnt.ATHB23_colamp_a_m1 11 CTTAATTAATT
ZFHD_tnt.ATHB24_col_a_m1 15 AAATGTAATTAATTA
ZFHD_tnt.ATHB24_colamp_a_m1 15 AAAAATAATTAATTA
ZFHD_tnt.ATHB25_col_a_m1 15 TAATTAATTAAGTTT
ZFHD_tnt.ATHB25_colamp_a_m1 11 CGTAATTAATG
ZFHD_tnt.ATHB33_col_a_m1 11 ACGTAATTAAT
ZFHD_tnt.ATHB33_colamp_a_m1 15 AAAAACGTAATTAAT
ZFHD_tnt.ATHB34_col_a_m1 15 TTTAATCATTAATTA
ZFHD_tnt.ATHB34_colamp_a_m1 15 TAAAACATGATTAAT
ZFHD_tnt.AtHB32_col200_a_m1 11 AATCGCATTAT
bHLH_tnt.BIM1_col_a_m1 14 CACGTGACATCCAC
bHLH_tnt.BIM1_colamp_a_m1 22 TGTCACGTGACTTTCACGTGCT
bHLH_tnt.BIM2_col_v3b_m1 15 CACGTGACTTTCACG
bHLH_tnt.BIM2_colamp_m1 19 GCCACGTGAATGGCACGTG
bHLH_tnt.BIM3_col_a_m1 18 ACGTGAATGTCACGTGAC
bHLH_tnt.PIF7_col_a_m1 15 GTGAATGCCACGTGG
bHLH_tnt.bHLH104_col_b_m1 20 GACACGTGTCAGCCCCGGGC
bHLH_tnt.bHLH10_col_a_m1 14 GAATGTGTCGGTGG
bHLH_tnt.bHLH10_colamp_a_m1 13 ATTGTCGGTGGAG
bHLH_tnt.bHLH122_col100_a_m1 14 TTAGCAACTTGCAT
bHLH_tnt.bHLH122_colamp_a_m1 11 TGCAACTTGCA
bHLH_tnt.bHLH130_col_a_m1 11 AGCAACTTGCA
bHLH_tnt.bHLH157_col_a_m1 20 ACAAATTGAACACGTCTCTT
bHLH_tnt.bHLH18_col_a_m1 17 CACGTGTTTCACGTGGT
bHLH_tnt.bHLH28_col_a_m1 12 AATTGTACGGAC
bHLH_tnt.bHLH31_col_m1 21 GAGGTGGCACGTGGCATTCAC
bHLH_tnt.bHLH34_col_m1 23 GTGGATGACACGTGTCAACACGT
bHLH_tnt.bHLH34_colamp_a_m1 21 TGGCACGTGTCATACACGTGC
bHLH_tnt.bHLH64_col_a_m1 6 ACCAGT
bHLH_tnt.bHLH69_col_a_m1 15 CGTGTTTGGCACGTG
bHLH_tnt.bHLH74_col_a_m1 21 CGTGAAAAGCACGTGACACCT
bHLH_tnt.bHLH74_colamp_a_m1 8 CACGTGAC
bHLH_tnt.bHLH77_col_a_m1 15 GAGAGGTCACGTGCG
bHLH_tnt.bHLH80_col_a_m1 11 TGCAAGTTGCA
bHLH_tnt.bHLH80_colamp_a_m1 11 TGCAACTTGCA
bZIP_tnt.ABF2_col_v3a_m1 18 AAAAATGCCACGTGACCA
bZIP_tnt.ABI5_col_v3h_m1 18 AAATGGTGACGTGGCAGT
bZIP_tnt.ABI5_colamp_v3b_m1 15 AATGGTGACGTGGCA
bZIP_tnt.AREB3_col_v31_m1 15 AATGGACACGTGGCA
bZIP_tnt.AREB3_colamp_a_m1 15 AATGGACACGTGGCA
bZIP_tnt.GBF3_col_m1 15 TGCCACGTCAGCATT
bZIP_tnt.GBF3_colamp_m1 15 AATGGTCACGTGGCA
bZIP_tnt.GBF5_col_v3a_m1 15 AATGCTGACGTGGCA
bZIP_tnt.GBF5_colamp_a_m1 15 AATGCTGACGTGGCA
bZIP_tnt.GBF6_col_m1 15 TGCCACGTCAGCATC
bZIP_tnt.GBF6_colamp_a_m1 15 AATGCTGACGTGGCA
bZIP_tnt.HY5_colamp_v3a_m1 15 AATGATGACGTGGCC
bZIP_tnt.TGA10_col_a_m1 15 GATGATGACGTCACT
bZIP_tnt.TGA10_colamp_a_m1 14 AATGACGTCATCAT
bZIP_tnt.TGA1_col_m1 15 AATGATGACGTCATC
bZIP_tnt.TGA1_colamp_a_m1 15 AAGATGACGTCATCA
bZIP_tnt.TGA2_col_m1 20 AATGACGTCATCATTATTGT
bZIP_tnt.TGA2_colamp_v31_m1 11 TGACGTCACCA
bZIP_tnt.TGA3_col_m1 14 GATGACGTCATCAT
bZIP_tnt.TGA3_colamp_a_m1 13 TGATGACGTCATC
bZIP_tnt.TGA4_col_a_m1 11 TGACGTCATCA
bZIP_tnt.TGA4_colamp_a_m1 15 AATGATGACGTCATC
bZIP_tnt.TGA5_col_v3a_m1 14 AATGACGTCATCAT
bZIP_tnt.TGA6_col_a_m1 15 AATGACGTCATCATT
bZIP_tnt.TGA6_colamp_a_m1 15 AATGACGTCATCATC
bZIP_tnt.TGA9_col_a_m1 11 GATGACGTCAT
bZIP_tnt.TGA9_colamp_a_m1 11 TGATGACGTCA
bZIP_tnt.VIP1_col_v3a_m1 12 TTGACAGCTGTA
bZIP_tnt.VIP1_colamp_a_m1 14 TGTACAGCTGTCAA
bZIP_tnt.bZIP16_col_v3a_m1 15 AATGGTCACGTGGCA
bZIP_tnt.bZIP16_colamp_a_m1 15 AATGCTGACGTGGCA
bZIP_tnt.bZIP18_col_v31_m1 11 ACCAGCTGTCA
bZIP_tnt.bZIP18_colamp_a_m1 11 ATGACAGCTGG
bZIP_tnt.bZIP28_col_a_m1 15 AATGATGACGTGGCA
bZIP_tnt.bZIP3_col_a_m1 15 GATGCTGACGTGGCA
bZIP_tnt.bZIP42_col_a_m1 12 TGCTGACGTGGC
bZIP_tnt.bZIP42_colamp_a_m1 13 TGCCACGTCAGCA
bZIP_tnt.bZIP43_col_a_m1 12 GCCACGTCAGCA
bZIP_tnt.bZIP44_col_m1 15 GATGCTGACGTGGCA
bZIP_tnt.bZIP44_colamp_a_m1 13 ATGCTGACGTGGC
bZIP_tnt.bZIP48_col_a_m1 14 GCCACGTCAGCATC
bZIP_tnt.bZIP48_colamp_a_m1 15 TGCCACGTCAGCATT
bZIP_tnt.bZIP50_col_v31_m1 17 TGATGACGTCATCTTTT
bZIP_tnt.bZIP50_colamp_v31_m1 14 CTGACGTCATCATC
bZIP_tnt.bZIP52_col_v31_m1 14 TTGACAGCTGGTCA
bZIP_tnt.bZIP52_colamp_a_m1 14 TGACCAGCTGTCAT
bZIP_tnt.bZIP53_col_m1 15 GATGCTGACGTGGCA
bZIP_tnt.bZIP53_colamp_a_m1 15 TATGCTGACGTGGCA
bZIP_tnt.bZIP68_col_a_m1 15 TGCCACGTCAGCATC
bZIP_tnt.bZIP69_col_a_m1 11 TACAGCTGGCA
bZIP_tnt.bZIP69_colamp_a_m1 11 GACAGCTGGCA
mTERF_tnt.AT5G23930_col_a_m1 20 CGCCGCCGCCACCGCCGCCG
zfGRF_tnt.AT3G42860_col_a_m1 11 AAAAGTCAACG

Random model letter frequencies (./background):
A 0.306 C 0.194 G 0.194 T 0.306


SECTION I: HIGH-SCORING MOTIF OCCURENCES

Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence

DEBUGGING INFORMATION

Command line:

fimo --parse-genomic-coord --verbosity 1 --oc fimo_out_30 --bgfile ./background --motif MADS_tnt.AGL55_col_a_m1 db/ARABD/ArabidopsisDAPv1.meme ./bZIP_intersect_summits.fasta

Settings:

output_directory = fimo_out_30 MEME file name = db/ARABD/ArabidopsisDAPv1.meme sequence file name = ./bZIP_intersect_summits.fasta
background file name = ./background alphabet = DNA max stored scores = 100000
allow clobber = true compute q-values = true parse genomic coord. = true
text only = false scan both strands = true max strand = false
threshold type = p-value output theshold = 0.0001 pseudocount = 0.1
alpha = 1 verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.


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