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Article

Catalytic Role of H2O Molecules in Oxidation of CH3OH in Water

School of International Liberal Studies, Waseda University, 1-6-1 Nishiwaseda, Shinjuku-ku, Tokyo 169-8050, Japan
Catalysts 2018, 8(4), 157; https://doi.org/10.3390/catal8040157
Submission received: 22 March 2018 / Revised: 7 April 2018 / Accepted: 10 April 2018 / Published: 12 April 2018

Abstract

:
We have examined the catalytic role of H2O molecules in the oxidation of CH3OH in water by quantum chemical simulations. A CH3OH is decomposed into molecules, a formaldehyde and an H2, in water, while it is converted into radicals in a gas phase reaction at a high temperature. H2O molecules located near a CH3OH form a first hydration shell and act as catalyst for the oxidation of CH3OH in water. The oxidation process of a CH3OH in water begins when a proton is delivered to a neighbor H2O molecule from a hydroxyl of a CH3OH. The H2O molecule transfers an extra proton to a second H2O molecule, a proton of which is combined with a proton detached from the methyl of the CH3OH, forming an H2. The energy barrier to decompose a CH3OH is significantly reduced by the catalyst of H2O molecules in water. A cluster of H2O molecules arise in water as an enclosed chain of hydrogen bonds between H2O molecules. A proton is transferred with less energy between H2O molecules within a cluster of H2O molecules. A cluster of five H2O molecules further reduces the energy barrier. The calculated oxidation rate of CH3OH with the transition state theory agrees well with that determined by experiments.

1. Introduction

Water is considered to be an ideal reaction medium to proceed chemical reactions of organic molecules efficiently when organic molecules are dissolved in water. It is possible to proceed chemical reactions to produce molecules as planed in water because the temperature and the pressure of water are controlled. Understanding chemical reactions of organic molecules in water provides us with valuable information to extract the energy of biomass without drying because biomass contains large amount of water [1]. CH3OH is one of the simplest products by reformation of biomass and is the source of energy for a direct methanol fuel cell. It would be beneficial to study chemical reactions containing CH3OH in water. We examine the oxidation of CH3OH in water in this study.
The oxidation process of CH3OH was extensively studied in the gas phase. The main channel for the oxidation of CH3OH is identified using the detected OH absorption signals [2]. An excited CH3OH in a shock wave or flame is primarily decomposed into two radicals as
CH 3 OH CH 3 + OH .
On the other hand, it is shown that CH3OH is decomposed into molecules in water.
Hack et al. [3] examined the oxidation of CH3OH in a flow reactor tube made of the alloy C-276 (Ni/Mo/Cr/Fe). They used a gas chromatography and a Fourier transform infrared spectrometer and found that the major product molecules for the oxidation of CH3OH are H2, CO2, and CH4. Hydrogen gas is the most abundant product in experiments. They measured the CH3OH concentration by a Raman spectrometer as a function of time and determined the oxidation rate of CH3OH in water as 1 . 3 × 10 - 2 /s at 653 K. The oxidation rate is dependent on the surface condition of the reactor, the heavy metals of which influence the oxidation rate of CH3OH [4]. Oxygen supply into a reactor is also shown to accelerate the oxidation of CH3OH [5].
It is interesting to investigate the effect of a reactor wall on the oxidation rate of CH3OH. Hirsh and Franck [6] determined the oxidation rate of CH3OH in a Ni alloy reactor with the larger volume than that used by Hack et al. They discovered the slower oxidation rate of CH3OH due to a smaller surface to volume ratio. DiLeo and Savage [1] adopted a sealed quartz tube to perform experiments for the oxidation of CH3OH in water without any catalyst as well as with catalyst of a Ni wire. This is the first experiment to measure the oxidation rate of CH3OH without catalyst. They determined the oxidation rate of CH3OH as 4 . 0 × 10 - 5 /s at 823 K, which is much slower than that given by Hack et al. (2005) in spite of the high temperature. They also found that the oxidation of CH3OH is significantly accelerated by adding a Ni metal wire in the experiment. The catalytic effect of a Ni wire becomes weak after multiple uses in the experiments.
In our previous study, we revealed the catalytic role of H2O molecules in chemical reactions in water by performing a number of quantum chemical simulations [7,8,9,10]. For example, H2O molecules get involved in the the dehydration process of methanediol when a proton is carried from a hydroxyl of a methanediol to an oxygen atom of the other hydroxyl to form an H2O molecule and a formaldehyde. An H2O molecule assists the transfer of a proton with little change of the structure of a methanediol, reducing the energy barrier for the dehydration. The calculated dehydration rate of a methanediol in water was shown to agree with that determined by experimental studies. We apply the same method to the oxidation of CH3OH.
In the present study, we examine the catalytic role of H2O molecules in the oxidation of CH3OH in water by performing quantum chemical simulations. We include H2O molecules to catalyze the oxidation in a simulation and calculate the energy barrier for the oxidation of a CH3OH as a function of the number of H2O molecules. H2O molecules have hydrogen bonds with neighbor H2O molecules and form a cluster of H2O molecules. We include a cluster of H2O molecules in the present simulation because we showed that a cluster of H2O molecules becomes an active catalyst in water [7,8,10]. The effect of metal on the oxidation of CH3OH is not considered at the present study even though it is essential when we consider the oxidation of CH3OH in a metal reactor [11]. We calculate the oxidation rate of CH3OH and compare it with that determined by experiments.

2. Results and Discussion

First, we optimize a tentative structure of a molecule using the B3LYP [12,13,14] fuctional with the 6-311+G(3df, 2p) basis set [15,16,17,18]. Then, we use the Gaussian 4 method to determine the optimized structure of the molecule. We examine the molecular oxidation process of a CH3OH into an HCHO and an H2. The optimized structures of a CH3OH, an HCHO, and an H2 are displayed in Figure 1 using the MOLDEN software [19]. The bond lengths and the angle of bonds calculated with the present simulations are compared with that determined by the experimental studies [20,21,22]. One of the CH bond in a CH3OH is shorter than the others because a hydrogen atom of the hydroxyl faces in the opposite direction with respect to the CH bond. We find the excellent agreement between the simulations and the experiments and confirm the Gaussian 4 method.
We locate a transition state by applying the synchronous transit guided quasi Newton method. The combinations of the H–O–C bend with the OH stretches brings a proton of the hydroxyl toward the carbon atom of a CH3OH. Figure 2 shows a transition state for the oxidation of the CH3OH. A bond is formed between the proton and the carbon atom, while another proton of the methyl is liberated. We find a single imaginary frequency of vibration in a transition state and confirm the discovered transition state. We execute the IRC calculation to trail the minimum energy pathway and discover local lowest energy points, which correspond to a CH3OH and a product compound. The product compound consists of an HCHO and an H2.
It was shown that the decomposition of formic acid and methanediol is efficiently accelerated by H2O molecules [7,8,9]. H2O molecules need to be incorporated in the simulations for the oxidation of CH3OH in water. We use the Amber 16 [12] and find the number density distribution of H2O molecules as a function of the distance from a CH3OH. We carry out a molecular dynamical simulation of a CH3OH and 2689 H2O molecules distributed in a box (46.9 Å, 47.7 Å, and 48.3 Å) for 100 pico seconds. The pressure and the temperature are controlled to keep constant values of 1 atm and 300 K.
The radial number density distribution of H2O molecules is shown in Figure 3 as a function of the distance from the carbon atom of the CH3OH. We normalize the number density of the H2O molecules by the background number density of H2O molecules. A CH3OH expels adjacent H2O molecules and forms an empty space with the radius of 2.8 Å around the CH3OH. The normalized number density of H2O molecules increases rapidly with the increasing distance from the CH3OH and has a maximum at 3.6 Å, which is a first hydration shell of the CH3OH. Beyond the first hydration shell, the normalized number density of the H2O molecules decreases and converges to one as the distance from the CH3OH increases because H2O molecules distant from a CH3OH are not influenced by the CH3OH.
The oxidation of CH3OH proceeds efficiently in water with the help of H2O molecules located near a CH3OH. The enhanced number density of H2O molecules at the first hydration shell of a CH3OH suggests the active catalytic role of H2O molecules in the oxidation of a CH3OH. We showed that H2O molecules assist the decomposition processes of formic acid and methanediol as catalyst [7,8]. H2O molecules are required to be included in a quantum chemical simulation to describe the oxidation process of a CH3OH in water. We consider two structures of a supermolecule in the present study: (1) a CH3OH and H2O molecules form a ring structure and (2) a CH3OH and a cluster of H2O molecules are bonded with hydrogen bonds.
In the first structure a CH3OH and H2O molecules are attracted by hydrogen bonds and form a ring structure in a transition state. The optimized structures of the transition states for the oxidation of a CH3OH are shown in Figure 4 when up to four H2O molecules are included in the simulations. A transition state cannot be located when five H2O molecules are introduced in a simulation.
The oxidation process of a CH3OH starts when a proton of a hydroxyl of a CH3OH is shared with a first neighbor H2O molecule with the label A. The shared proton is completely transferred to the first H2O molecule with the label A after another proton of the first H2O molecule with the label A is shared with a second H2O molecule with the label B when a CH3OH and two H2O molecules form a ring structure. On the other hand, a proton cannot be transferred to a second H2O molecule with the label B when more than three H2O molecules are included in the simulations. A transition state is formed when a proton is detached from the CH bond of the CH3OH as shown in Figure 4.
We adopt the transition states and carry out the IRC calculations with the 6-311+G(3df, 2p) basis set to follow the minimum energy reaction pathway. Reactant and product compounds are located at local minimums. We further apply the Gaussian 4 method to obtain the optimized structures of the reactant and product compounds. The optimized structures of the reactant compounds and the product compounds are shown in Figure 5 and Figure 6. A hydrogen bond is formed when an oxygen atom faces a neighbor hydrogen atom. A hydrogen bond network contains a hydroxyl of a CH3OH as shown in Figure 5. The total energy of a reactant compound is reduced by the formed hydrogen bonds inside the reactant compound.
Figure 6 shows the structures of the product compounds, an HCHO, an H2, and H2O molecules, when a CH3OH and H2O molecules form a ring structure in a transition state. An HCHO in a product compound has approximately the same structure with that shown in Figure 1. The hydrogen bonds stretch the CO bond weakly by a factor of 1.01. We confirm that the final products yielded from the oxidation of a CH3OH are an HCHO and an H2. The total energy of a product compound is also reduced due to the formed hydrogen bonds inside the product compound. A ring structure of a supermolecule is reconstructed after the oxidation.
We apply the transition state theory to calculate the oxidation rate of a CH3OH with Equation (3). The oxidation rate of a CH3OH is strongly dependent on the energy barrier for the oxidation. We calculate the energy barrier from the difference of the electronic energies corrected by the zero point energy between a transition state and a reactant compound. We find the electronic energy and the zero point energy with the Gaussian 4 method.
The energy barrier for the oxidation of a CH3OH is shown in Figure 7 and Table 1. The free energy differences between a reactant compound and a transition state at 298.15 K are also displayed in Table 1. The energy barrier for the oxidation of a CH3OH decreases from 90.9 kcal/mol to 65.2 kcal/mol when a single H2O molecule is included in a simulation. This indicates the catalytic role of a H2O molecule during the oxidation of a CH3OH. The energy barrier decreases further when more H2O molecules are introduced in the simulation and has a minimum value of 61.2 kcal/mol when three H2O molecules are included in the simulation.
A cluster of H2O molecules was shown to play an active role as catalyst in the decomposition of formic acid and methanediol [7,8]. A hydrogen bond in liquid water forms when a proton of an H2O molecule faces an oxygen atom of a neighbor H2O molecule. It is natural to consider that H2O molecules in liquid water develop a network of hydrogen bonds and frequently organize a cluster of H2O molecules. Experimental studies with the far-infrared vibrational-rotational-tunneling spectroscopy confirmed small clusters consisted of 2, 3, 4, and 5 H2O molecules [23,24,25,26]. A cluster of H2O molecules has a cyclic network of hydrogen bonds. The intermolecular distance between H2O molecules decreases by the cooperative many body interactions in a cluster of H2O molecules. A proton is efficiently transferred between H2O molecules within a cluster of H2O molecules.
A cluster of H2O molecules is expected to reduce the energy barrier in the oxidation of CH3OH as well. We include clusters with 4 and 5 H2O molecules in the simulations and examine the catalytic role of a cluster of H2O molecules in the oxidation of CH3OH. Figure 8 shows the optimized structures of the reactant compounds, the transition states, and the product compounds for the oxidation of a CH3OH catalyzed by a cluster of H2O molecules. A CH3OH uses two H2O molecules with the labels A and B within a cluster of H2O molecules to transfer a proton of the hydroxyl of a CH3OH, while the rest of H2O molecules in the cluster supports the two H2O molecules with hydrogen bonds. The oxidation process starts when a proton of an H2O molecule with the label A is transferred to an H2O molecule with the label B within a cluster of H2O molecules. An H2O molecule with the label A supplements the lost proton with a proton from a hydroxyl of a CH3OH. A transition state is formed when a proton is detached from a methyl of a CH3OH. An H2O molecule with the label B loses an extra proton, which is combined with a free proton detached from the methyl of a CH3OH, yielding an H2. Clusters of four and five H2O molecules are recovered in product compounds and might catalyze another oxidation of a CH3OH.
The energy barrier for the oxidation of a CH3OH is shown in Figure 9 when a cluster of H2O molecules catalyzes the oxidation. For comparison the energy barrier is also shown when a CH3OH and H2O molecules form a ring structure. The energy barrier for the oxidation of a CH3OH catalyzed by a cluster of four H2O molecules is nearly the same with that for the oxidation of a CH3OH by four H2O molecules in a ring structure. The energy barrier is reduced when a cluster of five H2O molecules catalyzes the oxidation. We obtain the lowest energy barrier of 58.5 kcal/mol when a cluster with five H2O molecules is included in the simulation. The energy barrier is about 3 kcal/mol lower than the lowest energy barrier obtained when a ring structure is formed by a CH3OH and H2O molecules.
In order to describe the entire decomposition processes of CH3OH, we need to consider the sequence of decompositions after HCHO: (1) from HCHO to CH2(OH)2, (2) from CH2(OH)2 to HCOOH, and (3) from HCOOH to CO or CO2. We performed the ONIOM(QM/MM) simulations [27,28,29,30] and revealed that HCHO is hydrated to become CH2(OH)2 with the low energy barrier of about 20 kcal/mol [9]. It is possible to consider the decomposition path from HCHO to CO, but it was shown that the energy barrier for this path becomes 61 kcal/mol and is higher than the energy barrier of 49 kcal/mol for the decomposition of CH2(OH)2 into HCOOH [10]. We further examined the decomposition of HCOOH and calculated the energy barriers for the decomposition of HCOOH into CO or CO2. Both energy barriers are shown to be lower than 40 kcal/mol [7]. The energy barriers for the decomposition of HCHO into CO or CO2 are much lower than the energy barrier of 58.5 kcal/mol to decompose CH3OH into HCHO. The rate constant for the decomposition of CH3OH into CO or CO2 is mainly determined by the rate constant to oxidize CH3OH into HCHO. We calculate the rate constant with Equation (3) and compare it with the decomposition rate of CH3OH determined by laboratory experiments.
Figure 10 shows the calculated rate constants for the oxidation of a CH3OH catalyzed by up to five H2O molecules as a function of the temperature. The rate constant for the oxidation of a CH3OH increases with an increase in the temperature regardless of the number of H2O molecules included in the simulations. When H2O molecules and a CH3OH form a ring structure in a simulation, the highest rate constant is obtained when two H2O molecules catalyzes the oxidation of a CH3OH. The rate constant is further enhanced by the catalyst of a cluster of five H2O molecules by a factor of 94.
Figure 10 also shows that the rate constants for the oxidation of CH3OH determined by laboratory experiments. The oxidation of CH3OH was examined using a Ni alloy reactor in experiments [3,6,31]. The rate constants determined by Hack et al. [3] is much larger than that calculated in the present study, indicating the catalytic role of the Ni alloy surface of a reactor. It was confirmed that the reactor surface acts as catalyst for the oxidation of CH3OH and increases the rate constant considerably. The oxidation rate is dependent on the surface condition of a reactor and is reduced by a factor of 1000 when the reactor surface is treated with HNO3/H2O2 before an experiment [3]. Hirsh and Franck [6] and Bennekom et al. [31] also used Ni alloy reactors to study the oxidation of CH3OH, however, their reactors have a surface to volume ratio smaller than that used by Hack et al. (2005), suggesting the weaker catalytic role of the surface of the reactor. It is shown in Figure 10 that the rate constants given by Hirsh and Franck (1993) and Bennekom et al. (2011) are much slower than that given by Hack et al. (2005). On the other hand, DiLeo and Savage [1] performed experiments for the oxidation of CH3OH in a sealed quartz tube to determine the oxidation rate of CH3OH without any catalytic effect of a reactor surface. The slowest oxidation of CH3OH was discovered due to the lack of catalytic effect of a reactor wall as shown in Figure 10, even though only a single data point was given.
The calculated rate constant is smaller than that given by DiLeo and Savage (2006) when we only consider the catalyst of H2O molecules in a ring structure with a CH3OH. The oxidation of CH3OH catalyzed by a cluster of five H2O molecules is required to be included to explain the measured oxidation rate of DiLeo and Savage (2006). The oxidation of CH3OH determined by the experiment is well explained if we consider three percent of CH3OH molecules are decomposed with the help of the catalyst of a cluster of five H2O molecules. The catalytic effect of Ni metal surface needs to be considered when we explain the oxidation rate of CH3OH determined by Hack et al. (2005) in a Ni alloy reactor.

3. Computational Method

A simple model for the oxidation process of a CH3OH in water is used at the present study. We consider the molecular oxidation of a CH3OH, the product of which are a formaldehyde, HCHO, and a hydrogen molecule, H2, given by
CH 3 OH HCHO + H 2 ,
even though a CH3OH is expected to decompose into radicals in the gas phase at the high temperature. The interaction of a CH3OH with another CH3OH is not considered in this study. Single carbon compounds such as methane might be formed in an experiment, however we do not consider any reactions involving single carbon compounds other than a CH3OH. A CH3OH decomposes into an HCHO and an H2 and interacts with nothing but some H2O molecules when H2O molecules act as catalyst for the oxidation of a CH3OH.
The previous studies showed a crucial role of H2O molecules to lower the energy barrier for the oxidation of formic acid and methanediol in water [7,8]. We perform molecular dynamical simulations with the Amber 16 [32] and find the distribution of H2O molecules around a CH3OH even though a molecular dynamical simulation is not useful to study the formation and breaking of molecular bonds. A CH3OH and H2O molecules are located in a box and interact with each other. The temperature and the pressure of a box are regulated to be constant values, T = 300 K and 1 atm. A three point model of TIP3P is used to describe a H2O molecule [33]. We adopt the periodic boundary conditions with the particle mesh Ewald method to take into account the electric forces of H2O molecules outside of the box. The positions of the CH3OH and H2O molecules are recorded every 0.1 ps. We obtain the number density distribution of the H2O molecules around the CH3OH by averaging 1000 coordinate data.
A proton is transferred from a reactant to a neighbor H2O molecule to promote the oxidation process efficiently. We need to include some H2O molecules in quantum chemical simulations to follow the formation and breaking processes of bonds between a proton and an H2O molecule. We adopt the Gaussian 16 software [34] to perform quantum simulations for the oxidation of a CH3OH in water. We deal with a supermolecule consisting of a CH3OH and H2O molecules when we examine the catalytic role of H2O molecules in the oxidation of CH3OH. We use the Gaussian 4 method and optimize the structure of a supermolecule because the Gaussian 4 method is reliable to calculate the enthalpy of formation [35]. The electronic energies as well as the vibrational frequencies at 0 K of a reactant compound, a transition state, and a product compound are calculated using the optimized structures of a supermolecule. We add thermal correction as a result of translation, rotation, and vibration of atomic nuclei to the electronic energy and obtain the total energy of a supermolecule. The energy barrier, Δ E 0 , for the oxidation of a CH3OH is given by the difference of the electronic energies corrected by the zero point energy between a transition state and a reactant compound.
Transition state theory expresses the oxidation rate of a CH3OH as
k = Γ * k B T h q q r c exp ( - Δ E 0 / k B T ) ,
where Γ * is an enhanced factor due to the tunneling of a proton through an energy barrier, q and q r c are the partition functions of a transition state and a reactant compound, and h, k B , and T, are the Planck constant, the Boltzmann constant, and the temperature, respectively. We calculate the enhanced factor due to the tunneling following our previous study [7] by approximating the energy barrier with the unsymmetrical Eckart potential. We carry out the IRC calculation and follow the minimum energy pathway to find a reactant compound and a product compound. The discovered reactant compound and product compound are further optimized with the Gaussian 4 method.
The partition function is calculated from the product of the partition functions due to translation, rotation, and vibration. Furthermore, the oxidation rate relies only on the partition functions of the rotation and the vibration because both a reactant compound and a transition state have nearly the same partition function for the translation. The rotational partition function is calculated from
q r = π T 3 Θ x Θ y Θ z ,
where Θ x , Θ y and Θ z are the rotational temperatures. The vibrational partition function of a supermolecule is given by
q v = i 3 N - 6 1 1 - exp ( - h ν i / k B T ) ,
where ν i is the frequency of the i-th vibrational mode and N is the total number of atoms contained in the supermolecule. The rotational temperatures and the vibrational frequencies are shown in the output file of the Gaussian 4 and used to obtain the partition functions of a transition state and a reactant compound with Equations (4) and (5).

4. Conclusions

We have examined the catalytic role of H2O molecules in the oxidation of CH3OH in water. We performed quantum chemical simulations with the Gaussian 4 method. The optimized structure of a CH3OH agrees well with that determined by experimental studies, guaranteeing the capability of the Gaussian 4 method. It was shown that H2O molecules near a CH3OH serve as effective catalyst in the oxidation of a CH3OH. The energy barrier for the oxidation of a CH3OH is reduced by 25.7 kcal/mol when a single H2O molecule is included in the simulation and decreases further if more H2O molecules get involved in the oxidation of a CH3OH. H2O molecules help to transfer a proton efficiently from a hydroxyl of a CH3OH to the proximity of the CH-bond in the CH3OH without significant change of the structure. The oxidation of a CH3OH is completed after the two protons combine to form an H2.
A number of hydrogen bonds frequently arise in liquid water. Some H2O molecules are joined together by a chain of hydrogen bonds. A cluster of H2O molecules is formed by an enclosed chain of hydrogen bonds. A cluster of H2O molecules is included in the simulation for the oxidation of a CH3OH. The energy barrier for the oxidation of a CH3OH is reduced further by a cluster of H2O molecules because a proton is transferred with less energy between H2O molecules within a cluster of H2O molecules. The minimum energy barrier is obtained when a cluster of five H2O molecules catalyzes the oxidation of a CH3OH.
We applied transition state theory to calculate the oxidation rate of a CH3OH considering the tunneling effect of a proton. The tunneling effect slightly increases the oxidation rate at the low temperature. The oxidation rate of a CH3OH increases with the increasing temperature. The calculated oxidation rate increases with the number of H2O molecules and has the maximum when a cluster of five H2O molecules catalyzes the oxidation of a CH3OH. The rapid oxidation of CH3OH was measured when CH3OH is decomposed in a Ni alloy reactor. The oxidation becomes slow when CH3OH is decomposed without any catalyst in a sealed quartz reactor. The oxidation rate of CH3OH in water without catalyst is well explained if we consider that three percent of CH3OH molecules are decomposed with the catalyst of a cluster of five H2O molecules, while the oxidation of the rest of the CH3OH molecules is catalyzed by two H2O molecules in a ring structure.

Acknowledgments

Computations were performed in Research Center for Computational Science, Okazaki, Japan.

Conflicts of Interest

The authors declare no conflict of interest.

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Figure 1. Optimized structures of a CH3OH, an HCHO, and an H2. Red, Gray, and brown solid circles correspond to an oxygen atom, a hydrogen atom, and a carbon atom, respectively. Atoms are chemically connected with one another with a bond. The number next to a bond is the calculated bond length in the unit of Å with that determined by an experiment [20,21,22] in a parenthesis.
Figure 1. Optimized structures of a CH3OH, an HCHO, and an H2. Red, Gray, and brown solid circles correspond to an oxygen atom, a hydrogen atom, and a carbon atom, respectively. Atoms are chemically connected with one another with a bond. The number next to a bond is the calculated bond length in the unit of Å with that determined by an experiment [20,21,22] in a parenthesis.
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Figure 2. Optimized structure of a transition state for the oxidation of a CH3OH without catalyst of H2O molecules. Thin solid lines are added in the transition state to present the lengths between atoms in Å. A product compound is displayed as well. TS0 and PC0 stand for a transition state and a product compound for the oxidation of a CH3OH without any catalyst.
Figure 2. Optimized structure of a transition state for the oxidation of a CH3OH without catalyst of H2O molecules. Thin solid lines are added in the transition state to present the lengths between atoms in Å. A product compound is displayed as well. TS0 and PC0 stand for a transition state and a product compound for the oxidation of a CH3OH without any catalyst.
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Figure 3. The normalized number density of H2O molecules as a function of the distance from the carbon atom of a CH3OH in Å. The number density of H2O molecules is normalized by the background number density of H2O molecules.
Figure 3. The normalized number density of H2O molecules as a function of the distance from the carbon atom of a CH3OH in Å. The number density of H2O molecules is normalized by the background number density of H2O molecules.
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Figure 4. Optimized structures of the transition states for the oxidation of a CH3OH when a CH3OH and H2O molecules form a ring structure. Four labels (A, B, C, D) are affixed to oxygen atoms of H2O molecules to distinguish. We apply the Gaussian 4 method and optimize the transition states. H2O molecules assist the oxidation of a CH3OH and up to four H2O molecules are included in the simulations. TSn stands for Transition States when the oxidation of a CH3OH is catalyzed by n H2O molecules in a ring structure.
Figure 4. Optimized structures of the transition states for the oxidation of a CH3OH when a CH3OH and H2O molecules form a ring structure. Four labels (A, B, C, D) are affixed to oxygen atoms of H2O molecules to distinguish. We apply the Gaussian 4 method and optimize the transition states. H2O molecules assist the oxidation of a CH3OH and up to four H2O molecules are included in the simulations. TSn stands for Transition States when the oxidation of a CH3OH is catalyzed by n H2O molecules in a ring structure.
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Figure 5. Optimized structures of the reactant compounds that consist of a CH3OH and H2O molecules. We use the Gaussian 4 method and optimize the reactant compounds. We introduce up to four H2O molecules in the simulations as catalyst. RCn stands for Reactant Compounds when the oxidation of a CH3OH is catalyzed by n H2O molecules in a ring structure.
Figure 5. Optimized structures of the reactant compounds that consist of a CH3OH and H2O molecules. We use the Gaussian 4 method and optimize the reactant compounds. We introduce up to four H2O molecules in the simulations as catalyst. RCn stands for Reactant Compounds when the oxidation of a CH3OH is catalyzed by n H2O molecules in a ring structure.
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Figure 6. Optimized structures of the product compounds for the oxidation of a CH3OH. We use the Gaussian 4 method and optimize the product compounds. PCn stands for Product Compounds when the oxidation of a CH3OH is catalyzed by n H2O molecules in a ring structure.
Figure 6. Optimized structures of the product compounds for the oxidation of a CH3OH. We use the Gaussian 4 method and optimize the product compounds. PCn stands for Product Compounds when the oxidation of a CH3OH is catalyzed by n H2O molecules in a ring structure.
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Figure 7. The energy barrier for the oxidation of a CH3OH in water with and without the catalyst of H2O molecules when a CH3OH and H2O molecules form a ring structure. The energy barrier is calculated from the difference of the electronic energies corrected by the zero point energy between a transition state and a reactant compound.
Figure 7. The energy barrier for the oxidation of a CH3OH in water with and without the catalyst of H2O molecules when a CH3OH and H2O molecules form a ring structure. The energy barrier is calculated from the difference of the electronic energies corrected by the zero point energy between a transition state and a reactant compound.
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Figure 8. Optimized structures of a reactant compound, a transition state, and a product compound when a cluster of H2O molecules catalyzes the oxidation of a CH3OH. The Gaussian 4 method is applied to locate and optimize the reactant compounds, transition states, and the product compounds. We consider clusters of 4 and 5 H2O molecules in the simulations. Labels (A, B, C, D, E) are affixed to oxygen atoms of H2O molecules in transition states to distinguish. WRCn, WTSn, and WPCn stand for a Reactant Compound, a Transition State, and a Product Compound for the oxidation of a CH3OH catalyzed by a cluster with n H2O molecules.
Figure 8. Optimized structures of a reactant compound, a transition state, and a product compound when a cluster of H2O molecules catalyzes the oxidation of a CH3OH. The Gaussian 4 method is applied to locate and optimize the reactant compounds, transition states, and the product compounds. We consider clusters of 4 and 5 H2O molecules in the simulations. Labels (A, B, C, D, E) are affixed to oxygen atoms of H2O molecules in transition states to distinguish. WRCn, WTSn, and WPCn stand for a Reactant Compound, a Transition State, and a Product Compound for the oxidation of a CH3OH catalyzed by a cluster with n H2O molecules.
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Figure 9. The energy barrier for the oxidation of a CH3OH in water when H2O molecules in a ring structure and a cluster of H2O molecules catalyze the oxidation of a CH3OH. The energy barrier is calculated from the difference of the electronic energies corrected by the zero point energy between a transition state and a reactant compound.
Figure 9. The energy barrier for the oxidation of a CH3OH in water when H2O molecules in a ring structure and a cluster of H2O molecules catalyze the oxidation of a CH3OH. The energy barrier is calculated from the difference of the electronic energies corrected by the zero point energy between a transition state and a reactant compound.
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Figure 10. Rate constants for the oxidation of a CH3OH measured in a laboratory [1,3,6,31] as well as that calculated in this study. The rate constant is calculated when the oxidation is catalyzed by up to four H2O molecules in a ring structure or by a cluster of five H2O molecules.
Figure 10. Rate constants for the oxidation of a CH3OH measured in a laboratory [1,3,6,31] as well as that calculated in this study. The rate constant is calculated when the oxidation is catalyzed by up to four H2O molecules in a ring structure or by a cluster of five H2O molecules.
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Table 1. The energy barriers (kcal/mol) as well as the free energy differences (kcal/mol) at 298.15 K between a reactant compound and a transition state for the oxidation of a CH3OH in water without and with the catalyst of H2O molecules. We consider the oxidation processes catalyzed by H2O molecules in the following two arrangements: (1) a CH3OH and H2O molecules form a ring structure, and (2) a CH3OH is bonded to a cluster of H2O molecules by hydrogen bonds.
Table 1. The energy barriers (kcal/mol) as well as the free energy differences (kcal/mol) at 298.15 K between a reactant compound and a transition state for the oxidation of a CH3OH in water without and with the catalyst of H2O molecules. We consider the oxidation processes catalyzed by H2O molecules in the following two arrangements: (1) a CH3OH and H2O molecules form a ring structure, and (2) a CH3OH is bonded to a cluster of H2O molecules by hydrogen bonds.
Number of H2O Moleculesn = 0n = 1n = 2n = 3n = 4n = 5
Δ E 0 (Ring)90.965.262.561.261.7
Δ E 0 (Cluster) 62.558.5
Δ G (Ring)91.068.263.963.264.0
Δ G (Cluster) 65.258.6

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Inaba, S. Catalytic Role of H2O Molecules in Oxidation of CH3OH in Water. Catalysts 2018, 8, 157. https://doi.org/10.3390/catal8040157

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Inaba S. Catalytic Role of H2O Molecules in Oxidation of CH3OH in Water. Catalysts. 2018; 8(4):157. https://doi.org/10.3390/catal8040157

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Inaba, Satoshi. 2018. "Catalytic Role of H2O Molecules in Oxidation of CH3OH in Water" Catalysts 8, no. 4: 157. https://doi.org/10.3390/catal8040157

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