Microbial Ecology: Interaction, Adaptation and Evolution

A special issue of Geosciences (ISSN 2076-3263).

Deadline for manuscript submissions: closed (31 March 2017)

Special Issue Editor


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Guest Editor
Department of Geosciences, Princeton University, Princeton, NJ, USA
Interests: environmental microbiology; geobiology; global change biology; biodiversity; ecology; evolution; adaptation; extreme environments; biogeochemistry cycling; environmental -omics (amplicon sequencing, metagenomics, metatranscriptomics, metaproteomics and single-cell genomics); greenhouse gas fluxes; integrated research of molecular microbiology and geochemistry

Special Issue Information

Dear Colleagues,

This Special Issue examines the intersection between geosciences and microbiology. Geomicrobiology is an interdisciplinary field of research on the study of the intimate interaction between microbial life and their environments, in the present or over geological time. While the geophysical, geothermal and geochemical conditions of an environment determine its habitability, microorganisms have also shown their incredible ability to modify the environment, adapt to various conditions and evolve to occupy new niches. In this regard, nature is not lacking in examples. For instance, the discovery of thermophiles that can grow in 121°C conditions; subsurface microorganisms living independent of light and photosynthase; piezophiles that can withstand pressure as high as 1,000 atm, etc.

This Special Issue aims to collect papers (original research articles, mini-reviews and perspectives) that incorporate geoscience and microbiological tools to reveal microorganisms’ interaction with each other and their surroundings. Potential topics include, but are not limited to: biogeography of microorganisms; phenotypic, genotypic and physiological adaptation; co-evolution of microorganisms and their environments; energetics and metabolic strategies for survival and growth; impact of microbial processes on geological and geochemical processes and vice versa; limits of life. Studies with an explicit time component and quantifiable expressions of the results are especially of interest.

As this Special Issue is expected to reach geobiologists as well as scientists with a strong but distinct background in geosciences and microbiology, authors are recommended to keep this in mind when preparing their manuscripts. Manuscripts are expected to state clearly the motives and hypotheses (if applicable) in the Introduction, to justify the methodology, to present data-supported results, and to discuss main findings as well as limitations. It is also important to state clearly the significance and implications of the main findings that advance the field. It is also recommended that all supporting data be made available online to the public at the time of publication. If authors are interested in submitting a manuscript, pre-submission communication with the Guest Editor is recommended.

Dr. Maggie Lau
Guest Editor

Manuscript Submission Information

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Keywords

  • geomicrobiology
  • geosciences
  • geochemistry
  • geospatial analysis
  • microbial ecology
  • microbial biogeography
  • interaction
  • adaptation
  • evolution

Published Papers (1 paper)

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Research

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Article
Influence of Substratum Hydrophobicity on the Geomicrobiology of River Biofilm Architecture and Ecology Analyzed by CMEIAS Bioimage Informatics
by Frank B. Dazzo, Rachel Sexton, Arham Jain, Arthur Makhoul, Michael Shears, Donald Gusfa, Shane Handelsman, Brighid Niccum and Daphne Onsay
Geosciences 2017, 7(3), 56; https://doi.org/10.3390/geosciences7030056 - 10 Jul 2017
Cited by 3 | Viewed by 5041
Abstract
Microbial biogeography in terrestrial and freshwater ecosystems is mainly dominated by community biofilm lifestyles. Here, we describe applications of computer-assisted microscopy using CMEIAS (Center for Microbial Ecology Image Analysis System) bioimage informatics software for a comprehensive analysis of river biofilm architectures and ecology. [...] Read more.
Microbial biogeography in terrestrial and freshwater ecosystems is mainly dominated by community biofilm lifestyles. Here, we describe applications of computer-assisted microscopy using CMEIAS (Center for Microbial Ecology Image Analysis System) bioimage informatics software for a comprehensive analysis of river biofilm architectures and ecology. Natural biofilms were developed for four summer days on microscope slides of plain borosilicate glass and transparent polystyrene submerged in the Red Cedar River that flows through the Michigan State University campus. Images of the biofilm communities were acquired using brightfield and phase-contrast microscopy at spatial resolutions revealing details of microcolonies and individual cells, then digitally segmented to the foreground objects of interest. Phenotypic features of their size, abundance, surface texture, contour morphology, fractal geometry, ecophysiology, and landscape/spatial ecology were digitally extracted and evaluated by many discriminating statistical tests. The results indicate that river biofilm architecture exhibits significant geospatial structure in situ, providing many insights on the strong influence that substratum hydrophobicity–wettability exert on biofilm development and ecology, including their productivity and colonization intensity, morphological diversity/dominance/conditional rarity, nutrient apportionment/uptake efficiency/utilization, allometry/metabolic activity, responses to starvation and bacteriovory stresses, spatial patterns of distribution/dispersion/connectivity, and interpolated autocorrelations of cooperative/conflicting cell–cell interactions at real-world spatial scales directly relevant to their ecological niches. The significant impact of substratum physicochemistry was revealed for biofilms during their early immature stage of development in the river ecosystem. Bioimage informatics can fill major gaps in understanding the geomicrobiology and microbial ecology of biofilms in situ when examined at spatial scales suitable for phenotypic analysis at microcolony and single-cell resolutions. Full article
(This article belongs to the Special Issue Microbial Ecology: Interaction, Adaptation and Evolution)
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