Diversity doi: 10.3390/d16030186
Authors: Luca Coppari Raoul Manenti Enrico Lunghi
Subterranean environments are often characterized by a natural gradient of microclimatic conditions and trophic resources, showing a higher trophic availability and a lower microclimatic stability in the shallowest area (close to the cave entrance), while the opposite occurs in the deepest sections. The shallowest areas of subterranean environments (e.g., the entrance and twilight zone, Mesovoid Shallow Substratum) act as ecotones between the surface habitats and the deep areas, creating a particular habitat which can be exploited by numerous species with different degrees of adaptation to subterranean environments. Species living in these ecotones may hold a key role in sustaining the entire ecosystem, as they are likely one of the major drivers of allochthonous organic matter. Indeed, these species are usually facultative cave-dwellers, meaning that they are able to exit and forage on the surface. Once these species are back inside the cave, they provide the local community with different typologies of organic matter (e.g., feces, eggs), which represent one of the most important sources of organic carbon. Therefore, studying which ecological features may exert significant effects on the abundance of these species may be of great help in understanding the ecosystem dynamics and the functional role of each species. In this study we analyzed the data collected through a year-round monitoring program, aiming to assess the potential effects that both abiotic and biotic features may have on the abundance of three facultative cave species. We focused on seven caves located in Monte Albo (Sardinia, Italy). The cave environments were divided into 3-meter sectors, and within each cave sector, microclimatic and biological data were seasonally recorded. We focused on the following facultative cave species: the spiders Metellina merianae and Tegenaria sp. and the snail Oxychilus oppressus. Different relationships were observed between the ecological features and the abundance of the three species. The two spiders were more abundant in warmer cave sectors closer to the cave entrance, especially the M. merianae. On the other hand, the snail tended to be more abundant farther from the cave entrance and in more illuminated cave sectors, probably because sunlight promotes the abundance of some of its trophic resources (e.g., lichens, vegetation). Furthermore, O. oppressus was the only species whose abundance and cave distribution was significantly affected by seasonality. This study provides useful and novel information to understand the population dynamics of facultative cave species and their role in subterranean ecosystems.
]]>Diversity doi: 10.3390/d16030185
Authors: Chaichat Boonyanusith Anton Brancelj Laorsri Sanoamuang
Two new species of copepods of the genus Elaphoidella Chappuis, 1929 were discovered in a cave and a spring in northeastern Thailand. The first species, E. phuphamanensis sp. nov., belongs to species-group VII sensu Lang. It is most similar to E. turgisetosa Petkovski, 1980 in the armament of the male third exopod of the fourth swimming leg and the shape and armament of the fifth swimming leg in both sexes. However, it is easily distinguished from other congeners by the segmentation of the first swimming leg, the endopod of the fourth swimming leg, and the armature of the third exopod of swimming legs 2–4 in both sexes. The second species, E. propecabezasi sp. nov., is located in species-group I sensu Lang, where the male does not have a transformed seta on the third exopod of the fourth swimming leg and the female fifth swimming leg has four baseoendopodal robust setae, unequal in length. It is most similar to E. cabezasi Petkovski, 1982 and E. paraaffinis Watiroyram, Sanoamuang and Brancelj, 2017 in having the same armature formula as endopods 1–2 of female swimming legs 1–4. However, the ornamentation of the anal operculum, the shape of the caudal ramus, and the armature of the fifth swimming leg in both sexes distinguish them from each other. A rare gynandromorphic specimen of E. propecabezasi sp. nov. was recorded, and a revised key to Elaphoidella species in Southeast Asia is provided.
]]>Diversity doi: 10.3390/d16030184
Authors: Adam Javorčík Ilias Strachinis Evanthia Thanou Panagiotis Kornilios Aziz Avcı Nazan Üzüm Kurtuluş Olgun Çetin Ilgaz Yusuf Kumlutaş Petros Lymberakis Zoltán T. Nagy Daniel Jablonski
In this study, we investigate the phylogeographic patterns of Dolichophis species in the Aegean region, aiming to elucidate their genetic diversity and putative historical colonisation routes through mitochondrial and nuclear DNA data. Our findings revealed distinct phylogeographic patterns: D. caspius exhibited a higher level of haplotypes within two shallow mitochondrial lineages, contrasting with D. jugularis, which displayed lower genetic variability in the area. Additionally, we identified evidence showing possible human-mediated historical translocation of D. caspius populations to Karpathos from the Balkans mainland. The mitochondrial variability in D. jugularis remained relatively uniform across southwestern Anatolia and Dodecanese, except for Rhodes Island. The evidence from mitochondrial and nuclear data confirming the previously described morphological differentiation of the Rhodes snakes, and thus the name D. j. zinneri Cattaneo, 2012, described on the island, could be applied to this isolated population. This result addresses the first genetic view on the long-standing taxonomic uncertainties regarding the subspecies status of Rhodes D. jugularis. Our results also raise questions regarding possible historical hybridisations between D. caspius and D. jugularis in the Dodecanese islands, prompting the need for further investigation using extensive field studies and genomic approaches. Ultimately, the Aegean islands, particularly Kos and Rhodes, seem to be important sites for the evolution of these colubrid snakes and their historical dynamics.
]]>Diversity doi: 10.3390/d16030183
Authors: Nicholus Kilonzo Joel T. Heinen Patrick Byakagaba
International trade is hastening extinction for many species of plants and animals despite the fact that many countries have ratified CITES. The adoption of treaties is often symbolic as many countries, especially in the developing world where most biodiversity is found, experience a lack of fit between international agreements and national laws and institutions. Our main objective here is to assess the extent of jurisdictional and institutional fit in the implementation of CITES in Kenya, an important issue given the amount of international trade in wild products and the importance of wildlife tourism to the country. The specific objectives are to assess the following: the capacity and level of coordination among state actors and conservation mandates in national policy and law using a mixed methods approach involving a literature review and 38 key informant surveys representing professional expertise from various stakeholder groups. We found that over 60% of respondents indicated only moderate capacity for the implementation of CITES and coordination between local and central governments. Some participants indicated that judicial officers lack adequate conservation knowledge, thus hampering enforcement via low prosecution rates. A moderate (at best) structural fit involving inefficiencies such as conflicting processes, unequal enforcement, and suboptimal coordination implies a degree of failure in developing the implementation capacity of CITES within Kenya. Our results also show a mismatch between agency staffing and workload at several levels of government, and we make suggestions for improvement.
]]>Diversity doi: 10.3390/d16030182
Authors: Friedrich Reimoser Ursula Nopp-Mayr
Wild ungulates are important drivers of the dynamics of many terrestrial ecosystems and impact biodiversity at different system levels [...]
]]>Diversity doi: 10.3390/d16030181
Authors: Huayong Zhang Zhe Li Hengchao Zou Zhongyu Wang Xinyu Zhu Yihe Zhang Zhao Liu
Tinospora Miers is considered a valuable medicinal herb that is suffering from severe habitat degradation due to climate change and human activities, but the variations in its suitable habitats and ecological service values remain unclear, especially in the context of accelerating global warming. In this study, we employed the MaxEnt model to estimate the suitable habitat changes and ecological service values of three rare Tinospora (T. craveniana, T. yunnanensis, and T. sinensis) species in China under four climate change scenarios (SSP126, SSP245, SSP370, and SSP585) from 2041 to 2100. The results show that the suitable habitats of T. craveniana, T. yunnanensis, and T. sinensis are mainly distributed in Sichuan, Yunnan, and Guangxi, respectively. Under the future climate scenarios, the suitable habitat of T. craveniana and T. sinensis is projected to expand toward the northeast and north, while that of T. yunnanensis will contract toward the northeast. The mean diurnal temperature range is the main environmental factor affecting T. craveniana and T. yunnanensis, while the annual mean temperature is a more important factor affecting T. sinensis. In the SSP245 scenario, T. craveniana and T. yunnanensis are expected to have the highest ecological service values from 2081 to 2100, while they will be relatively consistent in other climate scenarios and chronologies. The case of water protection accounts for the highest proportion of the total ecosystem service values, except for the economic value. This study provides a scientific reference for the diversity conservation of these rare species.
]]>Diversity doi: 10.3390/d16030180
Authors: Sang Lyeol Kim Kyung-Hee Oh Kongtae Ra Ok Hwan Yu
In the estuaries of Korea, the freshwater inflow increases rapidly due to the Changma (Korean summer rainy season). To elucidate the effect of this massive freshwater inflow on the benthic polychaete community, a survey was conducted before, during, and after the rainy season. Comparing the environmental characteristics before and after the rainy season, the salinity and dissolved oxygen decreased, the sand content of sediment was significantly reduced, and silt increased. The number of species decreased sharply, and this change was more considerable at sites closer to the estuary. Loimia sp. and Pseudopotamilla sp., the dominant species before the rainy season, were not found after the rainy season. The massive freshwater inflow during the rainy season has been a tremendous stress on the benthic environment and significantly alters the species composition and distribution of benthic polychaetes.
]]>Diversity doi: 10.3390/d16030179
Authors: Xiaoyan Pan Zongzhu Chen Jinrui Lei Xiaohua Chen Tingtian Wu Yuanling Li Yiqing Chen
Xylaria is a widely distributed genus in the Ascomycota phylum that can decompose wood. It is an essential decomposer in ecosystems and a source of bioactive secondary metabolites. Based on morphological characteristics and molecular evidence, this article thoroughly describes two new species discovered on the fallen leaves in Hainan Tropical Rainforest National Park, along with illustrations and comparisons with similar species. Xylaria diaoluoshanensis is characterized by filamentous stromata with long infertile apexes, ascospores sometimes with non-cellular appendages. Xylaria fulvotomentosa differentiates itself from other Xylaria species that grow on fallen leaves by its stroma surface, being yellow tomentose. These two new species of the genus Xylaria were found by phylogenetic analysis using the ITS-β-tubulin-RPB2 sequence dataset. Furthermore, a species first discovered in China, X. petchii, is described. Finally, a search table for 44 species related to fallen leaves and petioles in the world is established.
]]>Diversity doi: 10.3390/d16030178
Authors: Julianna Paulsen Jessica L. Allen Nathan Morris Jenna Dorey Jenifer B. Walke S. Elizabeth Alter
Bacterial symbionts are essential components of healthy biological systems. They are increasingly recognized as important factors in the study and management of threatened species and ecosystems. Despite management shifts at the ecosystem level, microbial communities are often neglected in discussions of holobiont conservation in favor of the primary members of a symbiosis. In this study, we addressed the bacterial community knowledge gap for one of two federally endangered lichen species in the United States, Cetradonia linearis (Cladoniaceae). We collected 28 samples of the endangered rock gnome lichen (Cetradonia linearis) from 13 sites and characterized bacterial communities in thalli using 16S rRNA metabarcoding to investigate the factors influencing the microbiome composition and diversity within the thallus. We found that Proteobacteria (37.8% ± 10.3) and Acidobacteria (25.9% ± 6.0) were the most abundant phyla recovered. Cyanobacteria were a major component of the microbiome in some individuals, despite this species associating with a green algal symbiont. Habitat, climate, and geography were all found to have significant influences on bacterial community composition. An analysis of the core microbiome at a 90% threshold revealed shared amplicon sequence variants in the microbiomes of other lichens in the family Cladoniaceae. We concluded that the bacterial microbiome of Cetradonia linearis is influenced by environmental factors and that some bacterial taxa may be core to this group. Further exploration into the microbiomes of rare lichen species is needed to understand the importance of bacterial symbionts to lichen diversity and distributions.
]]>Diversity doi: 10.3390/d16030177
Authors: Haley Hendrix Sílvia Pérez-Espona
Sea turtles are keystone species in marine environments due to their essential role as seagrass grazers and population regulation of jellyfish and sponges in coral reefs. However, due to their predominant presence in coastal areas, sea turtle populations face significant threats due to the impact of human activities. In this systematic review, 655 peer-reviewed publications were analyzed to assess the extent of population monitoring for all seven sea turtle species. The analyses revealed that, although population monitoring studies have increased for sea turtles in the past four decades, these have been biased towards certain species and oceanic regions. Furthermore, sea turtle population monitoring has been undertaken primarily using field-based methods, with satellite tracking and nest surveys being the most commonly used methods; however, the implementation of genetic methods for population monitoring has increased since the 2000s. Direct conservation recommendations from this study include the urgent need to establish population monitoring studies in the Critically Endangered Kemp’s ridley and hawksbill and the Data Deficient flatback. Furthermore, population monitoring programs should be implemented in Southeast Asia and Northern and Central Africa, where knowledge on sea turtle populations is still limited. Finally, due to the long-distance movements of sea turtles, we also advocate for international cooperation and collaboration of local communities to protect these ecologically important and iconic marine species.
]]>Diversity doi: 10.3390/d16030176
Authors: Taiyu Chen Pan Chen Bing Liu Dawei Wu Changhu Lu
Invasive smooth cordgrass (Spartina alterniflora) has been expanding rapidly through the coastal wetlands of eastern China and these changes negatively affect local birds. In the Dafeng Milu National Nature Reserve (henceforth referred to as DMNNR), rapid degradation of spartina occurs after an increase in milu (Elaphures davidianus; hereafter elk) numbers and ecological hydrological engineering. We evaluated the impact of such degradation on the abundance and species diversity of birds in the DMNNR during 2017–2021. We found that the area covered by S. alterniflora decreased significantly in the study area at a rate of 310 ha per year and by 62% during 2017–2021 (p < 0.01). With this decrease in the S. alterniflora area, the species richness and abundance of birds first increased and then decreased. Songbird density clearly decreased but species richness did not significantly do so. This research demonstrated that during the initial stages of vegetation degradation, there was a positive effect on bird diversity. With the increasing vegetation degradation increases, both songbirds and waterbirds experience negative impacts. The DMNNR is an important stopover site for waterbirds in the East Asian–Australasian Flyway, and additional measures are needed to control vegetation degradation and to restore the native habitats for birds.
]]>Diversity doi: 10.3390/d16030175
Authors: Torcuato Pulido Mantas Camilla Roveta Barbara Calcinai Fabio Benelli Martina Coppari Cristina Gioia Di Camillo Ubaldo Pantaleo Stefania Puce Carlo Cerrano
Porifera are essential components of marine ecosystems, providing valuable ecological functions. Traditional approaches to estimating sponge growth and biomass are destructive and often not suitable for certain morphologies. The implementation of new innovative techniques and nondestructive methodologies have allowed for a more sustainable approach. In this study, a population of Sarcotragus foetidus Schmidt, 1982 (Demospongiae, Dictyoceratida, Irciinidae), thriving inside the Portofino Marine Protected Area, was monitored using Structure from Motion photogrammetry over a period of 6 years, from September 2017 to October 2023. Of the 20 initial individuals, only 12 were still in place during the last monitoring, indicating 40% mortality. Through photogrammetry, the overall volume change and biomass production were estimated to be 9.24 ± 5.47% year−1 and 29.52 ± 27.93 g DW year−1, respectively, indicating a general decreasing trend between 2021 and 2023. Signs of necrosis were observed in some individuals, potentially related to the high temperature occurring during summer 2022 and 2023. Considering the current climate crisis, long-term monitoring efforts must be made to better understand the dynamics of this species, and photogrammetry has the potential to be a versatile monitoring tool that will contribute to the standardization of methodologies for sponge growth studies.
]]>Diversity doi: 10.3390/d16030174
Authors: Sung Hoon Kim Wuju Son Jeong-Hoon Kim Hyoung Sul La
The Ross Sea region Marine Protected Area (RSR MPA) is one of the most productive regions in the Southern Ocean. Mesozooplankton intermediates the primary product to the higher predators, such as penguins and seals, in this ecosystem. In this study, the mesozooplankton community structure and spatial pattern in the RSR MPA in January were investigated by using 505 μm-mesh-size bongo net samples. As a result, 37 mesozooplankton taxa with a total mean abundance of 35.26 ind./m3, ranging from 2.94 to 139.17 ind./m3, were confirmed. Of the 37 taxa, 7 occupied almost 84% of the total abundance, with copepods being the main dominant taxa. As shown by our hierarchical analysis, the mesozooplankton community was divided into four groups, each associated with a specific geographical distribution. Group A was composed of stations around Terra Nova Bay and showed relatively low abundance. Group B included stations around the continental slope region. Group D was composed of the Ross Sea continental shelf stations, while group C consisted of stations geographically located between those of groups B and D. These four groups were influenced by various environmental factors, such as water temperature, salinity, and nutrients. In summary, the mesozooplankton community can be separated according to geographical pattern. This pattern is related to several environmental factors.
]]>Diversity doi: 10.3390/d16030173
Authors: Jakub Sawicki Katarzyna Krawczyk Łukasz Paukszto Mateusz Maździarz Mateusz Kurzyński Joanna Szablińska-Piernik Monika Szczecińska
In this comprehensive review, we explore the significant role that nanopore sequencing technology plays in the study of plant organellar genomes, particularly mitochondrial and chloroplast DNA. To date, the application of nanopore sequencing has led to the successful sequencing of over 100 plant mitochondrial genomes and around 80 chloroplast genomes. These figures not only demonstrate the technology’s robustness but also mark a substantial advancement in the field, highlighting its efficacy in decoding the complex and dynamic nature of these genomes. Nanopore sequencing, known for its long-read capabilities, significantly surpasses traditional sequencing techniques, especially in addressing challenges like structural complexity and sequence repetitiveness in organellar DNA. This review delves into the nuances of nanopore sequencing, elaborating on its benefits compared to conventional methods and the groundbreaking applications it has fostered in plant organellar genomics. While its transformative impact is clear, the technology’s limitations, including error rates and computational requirements, are discussed, alongside potential solutions and prospects for technological refinement.
]]>Diversity doi: 10.3390/d16030172
Authors: Hein H. van Kleef Janneke M. M. van der Loop Laura S. van Veenhuisen
Australian swamp stonecrop (Crassula helmsii (Kirk) Cockayne) is invasive in Western Europe. Its small size and high potential for regeneration make it difficult to eliminate. Short-term experiments have demonstrated that the growth of C. helmsii depends on nutrient availability and resource competition. In order to confirm those mechanisms in the field, we studied the abundance of C. helmsii in Northern Europe over a longer period of time in relation to nutrient availability and co-occurring plant communities and plant species. C. helmsii impacted native species mainly by limiting their abundance. The native plant species present indicated that previous or periodic elevated nutrient availability were likely responsible for the proliferation of C. helmsii. When growing in submerged conditions, the dominance of C. helmsii depended on a high availability of CO2. A series of exceptionally dry summers allowed C. helmsii to increase in cover due to weakened biotic resistance and a loss of carbon limitation. Only Littorella uniflora (L.) Asch. and Juncus effusus L. were able to remain dominant and continue to provide biotic resistance. Based on our findings, minimizing nutrient (C and N) availability and optimizing hydrology provides native species with stable growth conditions. This optimizes resource competition and may prevent the proliferation of C. helmsii.
]]>Diversity doi: 10.3390/d16030171
Authors: João Rato Raquel Xavier D. James Harris Filipe Banha Pedro Anastácio
Freshwater turtles comprise 81% of all chelonian species despite freshwater systems only occupying 1% of the earth’s surface, and they are commonly exploited as pets and food resources. This contact between humans and turtles may put both sides at risk of disease transmission. Additionally, human impact on ecosystems can cause disease outbreaks in turtle populations. In this review, we focused on disease agents affecting freshwater turtles, intending to contribute to conservation and public health efforts. We analysed 423 articles and noted a post-SARS-COVID-19 peak, with most research originating from Asia, North America, and Europe. Emydidae was the most frequently studied family, and there was also a bias towards adults, live specimens, and native species. Since most of the studied turtles were wild-caught, we recommend that captive turtles should also be thoroughly studied since they can transmit diseases to other turtles and humans. We registered 2104 potential disease-causing agents, with Platyhelminthes dominating within Animalia, while Proteobacteria dominated bacterial agents. Viruses’ representation was low, highlighting gaps in reptile virology. Fungi, Chromista, and Protozoa were also underrepresented, but this is changing with the development of molecular tools. This synthesis serves as a foundation for targeted health assessments, conservation strategies, and future research, essential to mitigate ecosystem and public health threats.
]]>Diversity doi: 10.3390/d16030170
Authors: Martin Souto Pedro Miguel Raposeiro Ana Balibrea Vítor Gonçalves
This paper presents an annotated checklist of the Basidiomycota taxa (including lichenicolous fungi and the subdivision Pucciniomycotina) from the Azores archipelago and reviews the published records to account for their taxonomic status. The number of Basidiomycota species recorded in the Azores has increased considerably during the 20th century and now stands at 544 species. This study provides distribution data and includes changes in the nomenclature of the listed taxa. Sampling campaigns contributed to 116 new records of Basidiomycota for the Azores archipelago. In addition, there were new records for eight islands: 162 species found for the first time on São Miguel Island, 55 species new to Santa Maria Island, 33 species new to Flores Island, 15 species new to Terceira Island, 9 species new to Pico Island, 17 species new to São Jorge Island, 4 species new to Graciosa Island, and 2 species new to Corvo Island. The transformation of vegetation cover in the archipelago has been very drastic, and this is reflected in the presence of many foreign fungal species on the islands. From these data, we conclude that within Macaronesia, the diversity of Basidiomycota in the Azores is more similar to that in Madeira than in the Canary Islands.
]]>Diversity doi: 10.3390/d16030169
Authors: Roger Meek Luca Luiselli
The expansion of human activities across natural environments is now well known. This includes agricultural activities that effectively render many former natural environments sterile habitats for animals. Very often, what remains of the natural habitat are hedgerows that serve as habitat or pathways for movement between habitats for many species, including reptiles. In this study, we describe population changes in the western green lizard, Lacerta bilineata, in a hedgerow system in western France. The results are derived from a univariate diversity analysis of photographic data to identify individual lizards over a 4-year study period. Lizards were sighted from March April to October early November but there was a midsummer gap in sightings during July–August. The annual presence of individual lizards was low, both between and within years, but based on the diversity analysis, the overall stability of the population was high. Female numbers varied and were highest in 2020, but juveniles were highest in 2023; the numbers of males present each year were approximately the same. Individual lizards that were present before the midsummer gap were mostly absent after the midsummer gap and were replaced by new individuals. Incidences of autotomy were low in males and juveniles and were not recorded in females. In general, the results suggest that the lizards move through hedgerow systems but remain in a specific section for reproduction from March to July. Through this study, we also highlight the importance of univariate diversity formulas to obtain robust results in investigations of the demographic aspects of animal populations that are easy to monitor.
]]>Diversity doi: 10.3390/d16030168
Authors: Lwandiso Pamla Loyd R. Vukeya Thabiso M. Mokotjomela
The invasion of alien and invasive plants into the threatened Amathole Forest in Hogsback, Eastern Cape Province (South Africa) is an emerging priority conservation issue. The objective of this pilot study was to document and compare the foraging visits of two chacma baboon (Papio ursinus) troops in their natural and human habitats and their foraging behavioural activities to understand their potential to disperse ingested alien seeds in Hogsback. We also estimated the number of seeds per faecal sample collected from the foraging trails of the two troops of baboons, and determined potential dispersal distances using allometric equations. Since the focal troops used preferred sleeping and foraging sites, we predicted that these sites would have a high concentration of propagules. We applied the normalised difference vegetation index (NDVI) to discern possible vegetation cover changes. Overall, the two chacma baboon troops showed a similar number of daily foraging visits, although they preferred to forage more in human-modified than natural habitats. Their feeding and moving activities were significantly greater than other activities recorded during the study. There were significant differences in the numbers of seeds of six different fruiting plant species: 82.2 ± 13.3% (n = 284) for Acacia mearnsii; 78.9 ± 12.1% (n = 231) for Pinus patula, and 64.0 ± 20.0% (n = 108) for Solanum mauritianum. The two baboon troops could transport about 445 536 seeds from the six focal fruiting plant species considered in this study. Baboons’ seed dispersal distances were long at > 5 km per daily foraging activity. The NVDI vegetation cover analysis (i.e., 1978–2023) shows that the dense vegetation cover expanded by 80.9 ha, while the moderate and sparse vegetation cover collectively decreased by 10.3 ha. Although the seed dispersal pattern was neither clumped nor displayed any recognisable pattern, against our prediction, the number of faecal samples containing alien seeds and the observed foraging movement patterns suggest that chacma baboons disperse alien plant seeds that may establish and facilitate the deterioration of the natural forest. Further quantitative studies investigating the diversity of the plant species dispersed, their germination rates after ingestion by baboons, and their seasonal patterns are required to understand the baboon seed dispersal systems in the Amathole forests of Hogsback.
]]>Diversity doi: 10.3390/d16030167
Authors: Qingjie Zhou Lijun Wang Bingwen Xi Congping Ying Kai Liu
The longjaw tapertail anchovy Coilia nasus, which migrates from ocean to freshwater for spawning in spring, is an important anadromous fish with ecological and cultural significance. To determine parasite infection in anadromous C. nasus, a total of 103 fish from the Yangtze River were collected and examined in 2021 and 2022. The overall infection prevalence of nematodes in C. nasus was 100%, with a mean intensity of 13.81 ± 16.45. The mean intensity of nematode infections in 2022 was significantly higher than that observed in 2021 across all sampling sites (p < 0.05). Nematodes were widely detected in the mesentery, pyloric cecum, stomach, and liver, among which the mesentery accounted for the highest proportion, reaching up to 53.52%. A total of eight ascaridoid nematodes belonging to the family Anisakidae and Raphidascarididae were identified by using morphological characters and molecular biological techniques, including two species of Anisakis, five species of Hysterothylacium, and one species of Raphidascaris. A. pegreffii was found as the predominant species, accounting for 48.65% of all identified parasitic nematodes in liver, while Raphidascaris sp. was the most common nematode in the mesentery, pyloric cecum, and stomach, reaching up to 39.81%, 36.21%, and 74.36%, respectively. The present study systematically investigated the parasitic status and community structure of the nematode in C. nasus during its migration in the Yangtze River. This research provides a foundation for studying the impact of nematode parasitism on the reproductive migration and population recruitment of C. nasus, and offers valuable insights for biomarker screening and nematode identification in C. nasus.
]]>Diversity doi: 10.3390/d16030166
Authors: Hua-Zhi Qin Yu-Ting Liao Yu-Zhuo Zhang Wen-Fei Lin Xin-Quan Yang Nian-Kai Zeng
Hydnum (Hydnaceae, Cantharellales), one of the edible ectomycorrhizal mushrooms, is of considerable ecological and economic importance. Although previous studies have focused on the genus in China, the diversity still remains incompletely understood. In the present study, in addition to the known species from China being reviewed, six phylogenetic species from the country were described/redescribed, which included a new species: H. erectum, and five known taxa: H. cremeoalbum, H. minus, H. orientalbidum, H. tenuistipitum, and H. treui; H. treui is new to China. Detailed descriptions, color photographs of fresh basidiomata, and line drawings of microstructures of them are presented. A key to the accepted species of Hydnum in China is also provided.
]]>Diversity doi: 10.3390/d16030165
Authors: Alassane Sow Judson Van Wyk Benjamin Lemmond Rosanne Healy Matthew E. Smith Gregory Bonito
Pezizales are a diverse and economically important order of fungi. They are common in the environment, having epigeous form, such as morels and hypogeous, forms called truffles. The mature ascospores of most epigeous Pezizales are forcibly discharged through an opening at the ascus apex created with the lifting of the operculum, a lid-like structure specific to Pezizales. The axenic cultures of Pezizales fungi isolated from single ascospores are important for understanding the life cycle, development, ecology, and evolution of these fungi. However, obtaining single-spore isolates can be challenging, particularly for collections obtained in locations where sterile work environments are not available. In this paper, we introduce an accessible method for harvesting ascospores from fresh ascomata in the field and laboratory for obtaining single-spore isolates. Ascospores are harvested on the inside cover of Petri plate lids in the field, air dried, and stored. At a later date, single-spore isolates are axenically cultured through serial dilution and plating on antibiotic media. With this approach, we were able to harvest ascospores and obtain single-spore isolates from 12 saprotrophic and 2 ectomycorrhizal species belonging to six Pezizales families: Discinaceae, Morchellaceae, Pezizaceae, Pyronemataceae, Sarcosomataceae, and Sarcoscyphaceae. This method worked well for saprotrophic taxa (12 out of 19 species, 63%) and was even effective for a few ectomycorrhizal taxa (2 out of 13 species, 15%). This process was used to study the initial stages of spore germination and colony development in species across several Pezizales families. We found germination often commenced with the swelling of the spore, followed by the emergence of 1–8 germ tubes. This method is sufficiently straightforward that, provided with sterile Petri dishes, citizen scientists from distant locations could use this approach to capture spores and subsequently mail them with voucher specimens to a research laboratory for further study. The generated single-spore Pezizales isolates obtained through this method were used to generate high-quality genomic data. Isolates generated in this fashion can be used in manipulative experiments to better understand the biology, evolution, and ecogenomics of Pezizales.
]]>Diversity doi: 10.3390/d16030164
Authors: George Katselis Nikolaos Vlahos Constandin Koutsikopoulos Dimitrios K. Moutopoulos
Amvrakikos Gulf and its surrounding coastal lagoons are of primary importance for the local biodiversity and fishing activities. Fish species inhabited the coastal lagoons based on the seasonal ongoing migration movements of fry and adult fish individuals from the sea towards the lagoons. Information on the early stages of fish and decapod species in the Amvrakikos Gulf is limited only to the planktonic ontogenetic stages and reproduction biology, respectively. The aim of this study was to describe the spatial distribution of fry from commercially important fish and decapod species in the coastal zone of Amvrakikos Gulf. The seasonal appearance of the early stage of the most commercially important fish species caught in the coastal zone of the gulf ranged from one to four seasons, depending on the species. Individuals of all ontogenetic stages (fry, juveniles, and adults) were reported for several species (A. boyeri, A. fasciatus, S. abaster, S. tyfle, and B. ocellaris), indicating that these species may be regarded as residents in the coastal zone, providing habitats for their entire life cycle. The average relative abundance of the species/genera exhibited no differences compared to other Greek brackish waters. The species composition in the Amvrakikos Gulf at 10 cm and above was in agreement with the transitional nature of the area, with permanent and occasional species present. The present study emphasizes the importance of the coastal zone as a nursery habitat for commercially important species.
]]>Diversity doi: 10.3390/d16030163
Authors: György Deák Elena Holban Isabela Sadîca Abdulhusein Jawdhari
Sturgeon species have inhabited the world’s seas and rivers for more than 200 million years and hold significant taxonomic significance, representing a strong conservation interest in aquatic biodiversity as well as in the economic sector, as their meat and eggs (caviar) are highly valuable goods. Currently, sturgeon products and byproducts can be legally obtained from aquaculture as a sustainable source. Intensive farming practices are accompanied by parasitic infestations, while several groups of parasites have a significant impact on both wild and farmed sturgeons. The present article is a review of common sturgeon parasites from the genus: Protozoa, Trematoda, Crustacea, Nematodes, Monogenea, Hirudinea, Copepoda, Acanthocephala, Cestoda, Polypodiozoa, and Hyperoartia, while also addressing their pathology and statistical distribution.
]]>Diversity doi: 10.3390/d16030162
Authors: Sol Morales César A. Cárdenas Diego Bravo-Gómez Cristian Lagger
This work completes and updates the information about the diversity and distribution of benthic assemblages in an Antarctic fjord (South Bay, Antarctic Peninsula) 40 years after the first and only community-level study was conducted there. To determine the community changes, a photographic survey was conducted at four sites with different substrate inclinations along a bathymetric gradient of 5–20 m depth. In total, 160 photoquadrats were analyzed, resulting in a total area of 40 m2. Sixty taxa represented by 12 phyla were identified, of which eight phyla corresponded to animals. The remaining species corresponded to macroalgae and benthic diatoms, both taxa presenting the highest coverages of the entire study area. The highest richness and diversity values were obtained at greater depths and at the sites with the steepest slopes. Here, we discuss the role of substrate inclination and depth in the structure of the benthic assemblages concerning possible variations in the presence and frequency of physical disturbances (e.g., ice disturbance and sedimentation). The abundances, densities, and distributions of all species found are detailed, updating the ecological data of the benthic ecosystem of this Antarctic fjord from the previously published assessment four decades ago. In a continent where rapid environmental changes are being experienced due to climate-induced processes, we discuss the first massive record of benthic diatoms in this fjord and the striking absence of the sea urchin Sterechinus neumayeri, an abundant species from previous records from the early 1980s.
]]>Diversity doi: 10.3390/d16030161
Authors: Kaihui Gao Yao Cheng Rouzhen Geng Peng Xiao He Zhang Zhixu Wu Fangfang Cai Renhui Li
During the study of diversity in filamentous cyanobacteria in China, two strains (WZU0719 and WZU0723) with the form of thin filaments were isolated from the surface of Qiandao Lake, a large freshwater lake in Zhejiang Province, China. A comprehensive analysis was conducted, incorporating morphological, ecological, and molecular data. The morphological examination provided an initial identification as a Leptolyngbya-like cyanobacterium. Genetic characterization was also performed by amplifying the 16S rRNA gene and the 16S-23S rRNA internal transcribed spacer (ITS) region. The phylogenetic grouping based on the 16S rRNA gene demonstrates that the examined strain is unequivocally assigned to the Pegethrix genus. However, it possesses distinct phylogenetic divergence from the six described Pegethrix species. Additionally, discrepancies in habitat further differentiate it from other members of this genus. Employing the polyphasic approach, we present a comprehensive account of the newly discovered taxa: Pegethrix qiandaoensis sp. nov. The novel taxonomic finding in this research significantly contributes to enhancing the comprehension of Pegethrix diversity across various habitats.
]]>Diversity doi: 10.3390/d16030160
Authors: Jūratė Lynikienė Adas Marčiulynas Diana Marčiulynienė Artūras Gedminas Valeriia Mishcherikova Audrius Menkis
The aim of the presented study was to compare the diversity and composition of fungal communities associated with the roots and the rhizosphere soil of P. abies and Larix sp. in mid-age and mature managed forest stands in Lithuania. We also aimed to assess the presence of fungi–host-specific associations, i.e., whether Larix sp. stands could provide habitats for soil fungi currently associated with P. abies. The study sites were 10 Larix sp. and 10 P. abies forest stands in Lithuania. For the study, 100 root samples and 10 organic and 10 mineral soil samples were collected in P. abies stands as well as the same number in Larix sp. stands, and DNA was isolated, amplified using ITS2 rDNA as a marker and subjected to high-throughput sequencing. The results showed that the Shannon diversity index of fungal communities was similar between the two tree species when compared either between root (H = 4.26 P. abies and H = 3.82 Larix sp.), organic soil (H = 5.12 P. abies and H = 5.13 Larix sp.) or mineral soil (H = 4.71 P. abies and H = 4.29 Larix sp.) samples. Multivariate analysis showed that the fungal community composition in the organic and mineral soil samples of both P. abies and Larix sp. were similar, and thus, overlapping. The analysis also showed that the distribution of fungal species was denser in the roots and organic soil but more scattered in mineral soil. However, several fungi in the roots of either P. abies or Larix sp. showed a certain host specificity.
]]>Diversity doi: 10.3390/d16030159
Authors: Annalisa Azzola Carlo Nike Bianchi Lorenzo Merotto Alessandro Nota Francesco Tiralongo Carla Morri Alice Oprandi
Global warming is causing poleward expansion of species ranges. Temperate seas, in particular, are undergoing a process known as ‘tropicalisation’, i.e., the combination of sea-water warming and establishment of southern species. The Ligurian Sea is one of the coldest sectors of the Mediterranean and has thus been characterized by a dearth of warm-temperate species and a comparative abundance of cold-temperate species. This paper uses a time series of sea surface temperature (SST) and new records of thermophilic fish species to reconsider the biogeography of the Ligurian Sea. SST has risen by about 0.7 °C on average between 1948 and 2023, but two phases may be distinguished: a cool one (ended in the mid-1980s) and a warm one (still ongoing); the latter phase shows alternating periods of rapid warming and comparatively stationary temperature. The arrival of thermophilic species coincided with the periods of rapid warming; some of these species were established in the subsequent stationary periods. Heatwaves and climate-related diseases associated with the periods of rapid warming have caused mass mortalities of autochthonous species. Our knowledge on the biogeography of the Ligurian Sea was established during the cool phase; the present situation, however, calls for re-defining the chorological spectrum of the Ligurian Sea biota.
]]>Diversity doi: 10.3390/d16030158
Authors: Petra Kundid Camila Pantoja Kristýna Janovcová Miroslava Soldánová
Cercariae of Plagiorchis spp. are frequently reported in European freshwater snails, but their true diversity is difficult to estimate due to subtle differences in morphology. We molecularly characterized 67 isolates of Plagiorchis cercariae collected from four lymnaeid snail hosts, Ampullaceana balthica, Ampullaceana lagotis, Radix auricularia and Lymnaea stagnalis in freshwater ecosystems in the Czech Republic and Poland. Based on mitochondrial cox1 and nuclear 28S sequences, ten species or species-level lineages were identified, including the first molecular evidence of P. vespertilionis from snail hosts and two species-level lineages reported for the first time. Previously undescribed species and species-level lineages are characterized morphometrically. We confirm the overlapping spatial distribution of Plagiorchis spp. in their snail hosts from Central Europe with those from Western and sub-Arctic Europe. Our results increase the known diversity of Plagiorchis spp. in Europe to 25 species/lineages in snails, but further research is needed to establish links between life cycle stages and to assess the host specificity of these parasites.
]]>Diversity doi: 10.3390/d16030157
Authors: Louis Deharveng Anne Bedos Tanja Pipan David C. Culver
Since the 1980s, with the widespread use of the phrase biodiversity [...]
]]>Diversity doi: 10.3390/d16030156
Authors: Rui Wang Ran Zhang Xing Miao Hai Li Puqing Song Yuan Li Longshan Lin
Studies on the demersal fish composition of the East Antarctic nearshore region are very scarce due to the harsh physical geography of the East Antarctic region, which is covered in ice and snow year round, leading to a scarcity of scientific surveys. Based on the data from the bottom trawl survey conducted by the 37–38th Chinese National Antarctic Research Expedition (CHINARE) program in the Cosmonaut Sea, East Antarctica, the species of demersal fishes were identified, and the demersal fish composition and the characteristics of depth distribution were examined and analyzed. The basic biological information of highly abundant species was analyzed. The results from 97 individuals sampled within 30–60° E, south of −65° S, indicate that the fishes belong to 5 orders, 11 families, 19 genera, and 23 species. Most of the species are found in Myctophidae and Bathydraconidae, and the most common species is Macrourus whitsoni (Macrouridae). Macrourus whitsoni and Prionodraco evansii have a high abundance in the survey. Macrourus whitsoni has body lengths of 144–662 mm and body weights of 17.3–1425.1 g, and Prionodraco evansii has body lengths of 90.18–134.33 mm and body weights of 4.9–20.7 g. The length–weight relationships for Macrourus whitsoni and Prionodraco evansii are y=0.00002x2.748 and y=0.000006x3.353, respectively. All the Macrourus whitsoni samples were found in waters deeper than 1000 m, with the highest number of individuals captured at depths of 1500–2000 m. Prionodraco evansii was found only at stations less than 250 m deep. These results complement the demersal fish composition and distribution data of the Cosmonaut Sea, East Antarctica. These data can provide valuable basic information for characterizing regional assemblages and delineating zoogeographic boundaries.
]]>Diversity doi: 10.3390/d16030155
Authors: Armelle Jung Arthur Ory Paul Abaut Lucas Zaccagnini
A large number of pelagic shark species have declined significantly in recent decades due to overfishing, bycatch, and habitat degradation. Whereas porbeagle sharks have become scarce due to a reduction in their populations around the world, recent stock evaluations are giving positive signals about the evolution of the North-Eastern Atlantic stock size. The porbeagle shark (Lamna nasus), an offshore pelagic species with a wide distribution, is designated by IUCN as Globally Vulnerable and Critically Endangered for Europe and subject to various international conservation conventions. An increasing number of observations are reported off the Brittany coast of Trégor. The ecological role of this area for the species is still unknown and greater knowledge is needed to develop and apply sustainable management measures on a local and international scale. This study represents the first use of photo-identification on porbeagle sharks in order to improve the ecological knowledge of the species in the Trégor area. These results confirm the effectiveness of this method, with 19 of the 131 individuals identified being re-sighted, indicating an interesting degree of site fidelity and showing a sex ratio of 100% females. Observations of individuals over several years allowed the researchers to discuss the relevance of the different types of marks. The findings suggest that the Trégor area off the Brittany coast serves as a seasonal residence for female porbeagle sharks, especially between May and October. This study represents a successful first step in the use of photo-identification for this species. It offers technical support for the sharing of the methodology and provides some biological knowledge allowing researchers to discuss potential sustainable management measures for the conservation of porbeagle sharks in the study area and their habitats while needed.
]]>Diversity doi: 10.3390/d16030154
Authors: Muhammad Suliman Wenyou Deng Qingming Wu Tariq Ahmad Xueying Sun Debela Megersa Tsegaye Muhammad Sadiq Khan Ngo Thi Kieu Trang Hongfei Zou
This study was designed to determine the fragmentation of sub-lakes in winter and its effects on wintering waterbirds in Poyang Lake. Poyang Lake becomes fragmented in winter, which forms many seasonal sub-lakes every year, and have different environmental characteristics. These sub-lakes significantly impact winter bird habitats and result in susceptibility to various changes, because birds have different distribution responses. A total of 24 sub-lakes were surveyed from one to five vantage points using point count methods in each sub-lake with binoculars, monocular, and a spotting scope for four consecutive winter seasons. The multi-site dissimilarity Sorensen index measures overlapped between two populations, and the R software “iNEXT” package was used to evaluate the sample coverage test of the study area. We observed 58 wintering waterbird species belonging to 9 orders and 15 families from 2016 to 2020. Spearman correlation analysis showed that the species richness of wintering waterbirds was significantly positively correlated with the sub-lake areas and associated with the richness of habitat type. The WNODF analyses were considerably correlated for sites of waterbirds, mainly with the abundance of forage and conservation of habitat form. The outcomes of this study showed that Maying Lake has the highest local beta diversity, whereas Dacha Lake has the lowest local beta diversity contribution (0.007). This study’s findings demonstrate Poyang Lake’s role in waterbird the habitat suitability of waterbirds, especially for foraging and conservation.
]]>Diversity doi: 10.3390/d16030153
Authors: Maria Papazekou Amalia Kyprioti Anastasia Chatzimentor Charalampos Dimitriadis Nikolaos Vallianos Antonios D. Mazaris
In the face of environmental change, high-quality and fine-scale information is essential in order to monitor the highly dynamic environments on land and sea. While traditional approaches to data collection face a number of practical limitations, advanced technologies could supplement and further improve our efforts. Taking sea turtles as a modeling organism, we present a novel methodological framework for monitoring species by means of advanced technologies, including Unmanned Aerial Vehicles coupled with image and temperature sensors. Diverse monitoring protocols were refined through pilot studies conducted in both terrestrial and nearshore sea turtle habitats. Our approach focuses on the collection of information for critical biological parameters concerning species reproduction and habitat use, following the complex life cycle of the species. Apart from biological information, our framework encompasses also the collection of information on crucial environmental factors that might be changing due to current and future human-derived pressures, such as beach erosion and temperature profile, as well as highly important human activities such as recreational use within nesting beaches that could undermine habitat quality for the species. This holistic and standardized approach to monitoring using advanced technologies could foster our capacity for conservation, resolving difficulties previously addressed and improving the collection of biological and environmental data in the frame of an adaptive management scheme.
]]>Diversity doi: 10.3390/d16030152
Authors: Ioannis Tsiripidis Stavroula Stamellou Aristotelis C. Papageorgiou Andreas D. Drouzas
The distribution of vascular plant species and assemblages existing in beech (Fagus sylvatica L.) forests was compared with the distribution of beech chloroplast DNA (cpDNA) haplotypes, aiming to identify possible interpretable trends of co-occurrence, on a small geographical scale, and to infer the relevant historical factors. Vegetation and genetic (cpSSR) data were collected from 60 plots on Mt. Menikio (northeastern Greece). Classification and ordination analyses were applied on the vegetation data, while on the cpSSR data, diversity measures and genetic structure analyses were employed. A probabilistic co-occurrence analysis was performed on haplotypes and taxa. The results show that a plant biogeographical border exists on Mt. Menikio which, in addition, has acted both as a refugium and as a meeting point of lineages for more than one glacial cycle. Significant associations of co-occurrence between haplotypes and vascular taxa were found but no common distribution patterns between the former and species assemblages were identified. The combined consideration of the distribution profiles of species assemblages, plant species and cpDNA haplotypes (corresponding to the three levels of biodiversity) provides concrete information on historical events, leading to a comprehensive understanding of the evolutionary and biogeographical processes that have shaped specific spatial patterns of biodiversity.
]]>Diversity doi: 10.3390/d16030151
Authors: Ricos Thanopoulos Ioulia Drossinou Iasonas Koutroumpelas Tilemachos Chatzigeorgiou Maritina Stavrakaki Penelope J. Bebeli
Landraces are identified for their genetic diversity and heritage value. Geographically isolated areas are gradually recognized for their agricultural diversity and importance in conservation. One of the consequences of agricultural intensification is an increase in crop uniformity and hence a reduction in the landraces’ genetic resources. Messinia, located in Southwest Peloponnese, Greece, is characterized by a diverse terrain and smallholdings. The geomorphological character of the area and farmers’ selections have led to new landraces (local varieties) with unique traits and specific adaptations. A total of 110 villages/settlements were visited between 2013–2016, aiming to explore the existing wealth of landraces and the degree of genetic erosion. The genetic material collected and the testimonies extracted from local communities were compared to data from past expeditions, gene banks, and portal databases. Of the 427 collected samples, the majority belonged to annual vegetable or pulse species, indicating the genetic diversity of the groups, which was likely related to their culinary value. Perennial crops are priced both as commercial and staple crops, with olive trees dominating the agricultural landscape. Genetic erosion and production decline were noticed for cereals. It is concluded that socio-cultural and agricultural trends have a strong influence on the survival of landraces. Without exhausting the agricultural wealth of the region, the present study suggests that Messinia is an agrobiodiversity hotspot that includes neglected crops.
]]>Diversity doi: 10.3390/d16030150
Authors: Georgios Karris Stavros Xirouchakis Konstantinos Poirazidis Marios-Dimitrios Voulgaris Anastasia Tsouroupi Spyros Sfenthourakis Sinos Giokas
Here we report, for the first time, aspects of the breeding performance of Scopoli’s Shearwater (Calonectris diomedea) in one of its largest colonies in Europe, i.e., in the Strofades island group. We describe the chronology of the main events in the breeding cycle of this species on Stamfani Island, the largest island of this island group, including the evaluation of breeding performance and the influence of ecological factors (nesting habitat, nest type, nest-entrance orientation, and occupation rate per nest) on breeding success. The Scopoli’s Shearwater colony of Stamfani Island exhibited a high degree of breeding synchrony and nest site tenacity. The data obtained by monitoring 472 nests during five consecutive years (2008–2012), showed a breeding success (fledging per occupied nest per year) of up to 66.6%. In addition, hatching success (chick hatched successfully per egg laid) was 76.9%, and fledging success (fledging young per chick hatched successfully) was 86.8%. We also observed annual variations in breeding performance during that period. These results seemed to be influenced positively by the breeding experience of the pair. Furthermore, the type of nest site and the nest-entrance orientation were found to have an effect on breeding success rates, whereas the nesting habitat did not, indicating low predation risk by rats.
]]>Diversity doi: 10.3390/d16030149
Authors: Vadim A. Bakalin Ksenia G. Klimova Seung Se Choi Van Sinh Nguyen
The distribution of known Syzygiella taxa in Indochina was reviewed. Currently, four species are known in Indochina: S. autumnalis, S. elongella, S. nipponica, and S. securifolia. This genus is reported for the first time in the flora of Cambodia, and S. securifolia is newly recorded for Vietnam. Herein, a description of oil bodies for S. securifolia is provided for the first time. A morphological description of the species and intravital photographs, as well as line-art illustrations, are provided along with the identification key to the Syzygiella taxa known in Indochina. A comparison of the climatic parameters of the collection sites for four known species showed that three of them occupy a relatively marginal position in the flora of Indochina as a whole and are known from colder biomes on the very northern edge of the peninsula. The locations of Syzygiella securifolia are scattered not only on the geographical map of Indochina but also on the bioclimatic scatterplot; these locations are likely an underestimation of the distribution of this taxon in Indochina, although it is generally rare worldwide. A comparison of lists of liverworts across the countries of Indochina will help identify groups of taxa for further targeted searches with the purpose of obtaining more comprehensive knowledge of the biodiversity of still poorly studied Indochina countries.
]]>Diversity doi: 10.3390/d16030148
Authors: Mengyao Li Chuli Liu Wanbin Shi Aifan Wang Rong Ma Xiujuan Su
Lavender is an oil-bearing plant, which has long been cultivated for oil, fresh flowers, dried products, and food. Leaf blight disease was observed on ‘Bandera Pink’, which belongs to Lavandula stoechas in Yining County, Xinjiang Uygur Autonomous Region, China. The causal agent of this disease was isolated, and Koch’s postulates were assessed to confirm its pathogenicity. The morphological characteristics of the pathogen were observed, and the LSU, ITS, tef1, and tub2 loci were combined and analyzed. Based on morphological characterization and phylogenetic analyses, the causal agent was identified as a fungal species named Dothiorella sarmentorum. Pathogenicity tests revealed that D. sarmentorum can infect seven varieties of three lavender species. This is the first report of D. sarmentorum causing lavender leaf blight. This study provides a theoretical basis for the diagnosis of disease and the monitoring of disease occurrence and epidemics.
]]>Diversity doi: 10.3390/d16030147
Authors: Olaf Höltke Erin E. Maxwell Michael W. Rasser
In recent years, new findings and new methods (stable isotopes of oxygen, zinc, and nitrogen; 2D and 3D modeling; and geometric morphometric analyses of the teeth) have enhanced our knowledge of the Neogene shark fauna and its paleobiology. Several papers deal with the large Otodus (Megaselachus) species, including the construction of a 3D model, as well as insights into its lifestyle and diet. In addition, the skeletal remains of Carcharias gustrowensis, Carcharodon hastalis, and Keasius parvus and a natural tooth set of Carcharodon hubbelli have been described in the last 13 years, and the dentition of the Neogene species Carcharoides catticus, Megachasma applegatei, and Parotodus benedenii has been reconstructed. Stable isotope analyses of the teeth from the Neogene species of Araloselachus, Carcharias, Carcharodon, Galeocerdo, Hemipristris, and Mitsukurina have given insights into the trophic positions of these genera during the Neogene, and shark teeth preserved near the skeletal remains of prey animals (mammals) and shark bite traces on these remains provide direct evidence of trophic interactions. The tooth shape, fossil locality, and paleoenvironment have been used to better understand the taxa Carcharhinus dicelmai, Megalolamna paradoxodon, Pachyscyllium dachiardii, and P. distans. Among extant species, Galeorhinus galeus can be traced back to the Eocene. Alopias superciliosus, Rhincodon typus, and possibly A. vulpinus can be traced back to the Oligocene. Species present by the Miocene include Alopias vulpinus, Carcharhinus amblyrhynchoides, C. amblyrhynchos, C. albimarginatus, C. amboinensis, C. brachyurus, C. brevipinna, C. falciformis, C. glaucus, C. leucas, C. limbatus, C. longimanus, C. macloti, C. obscurus, C. perezi, C. sealei, Centrophorus granulosus, Cetorhinus maximus, Dalatias licha, Deania calcea, Galeocerdo cuvier, Glyphis glyphis, Heptranchias perlo, Isurus paucus, Lamna nasus, Negaprion brevirostris, Odontaspis ferox, Pseudocarcharias kamoharai, Sphyrna media, S. mokarran, and possibly Carcharodon carcharias. First appearing in the Pliocene are Scymnodon ringens, Somniosus rostratus, and Zameus squamulosus. For some extant species (Carcharias taurus, Hexanchus griseus, Isurus oxyrinchus, Notorynchus cepedianus, and Sphyrna zygaena), it is not clear whether the assigned Neogene teeth represent the same species. The application of new methods to more fossil shark taxa, a detailed search for shark fossils, and better knowledge of the dentition of extant species (especially those with minute-sized teeth) will further enhance our knowledge of the evolution and paleobiology of sharks.
]]>Diversity doi: 10.3390/d16030146
Authors: Daniel Enrique Figueroa Mauro Belleggia Gabriela Andreoli Silvina Izzo Nelson Bovcon Marcos Pérez-Losada Agustín María De Wysiecki Jorge Horacio Colonello María Inés Trucco
The identity of longnose skates (Dipturus-Zearaja-like skates) in the southern cone of the Americas has been a topic of extensive debate. This study employs a comprehensive analysis encompassing morphometrics, claspers, and the examination of COI and NADH2 sequence data to conclusively demonstrate the existence of only two longnose skate species in the southwestern Atlantic Ocean, extending south of 35 °S. Notably, Dipturus argentinensis Díaz de Astarloa, Mabragaña, Hanner and Figueroa, 2008 is revealed as a junior synonym of D. trachyderma (Krefft and Stehmann, 1975). Dipturus leptocaudus (Krefft and Stehmann, 1975) remains a northern valid species, but the specimen from the Falkland Islands (Malvinas) is recognized as a misidentification of D. trachyderma. Zearaja flavirostris (Philippi, 1892) and Dipturus lamillai Concha, Caira, Ebert and Pompert, 2019 are confirmed as junior synonyms of Zearaja brevicaudata (Marini, 1933). These findings contradict the previous report of six species within the same region over the last decade and underscore the presence of D. trachyderma and Z. brevicaudata south of 35 °S in the southwestern Atlantic. Additionally, this study notes the occurrence of only one specimen of Z. chilensis (Guichenot, 1848) in the Falkland Islands (Malvinas), suggesting an unusual frequency of this eastern Pacific skate in the southern Southwest Atlantic. Given that clasper morphology serves as the key distinguishing trait between Dipturus and Zearaja species, we provided a detailed analysis of the clasper characteristics of the Atlantic D. trachyderma, unequivocally situating it within Dipturus. The diagnostic characteristics include: (i) the presence of cartilage with the distal portion referred to as the sentinel, a feature absent in Zearaja; (ii) longer ventral terminal cartilage with the distal end referred to as the funnel, compared to Zearaja; and (iii) a non-spatulate distal lobe, a distinctive trait specific to Dipturus.
]]>Diversity doi: 10.3390/d16030145
Authors: Remo Probst Matthias Schmidt Michael McGrady Christian Pichler
The Natura 2000 network of protected areas is the backbone of species conservation in the European Union. We investigated whether Austrian-hatched white-tailed eagles (Haliaeetus albicilla) make particular use of this multinational network during their natal dispersal, and what habitats were of importance to the eagles. We analyzed the utilization distribution of 907,466 GPS locations from 38 dispersing white-tailed eagles using a dynamic Brownian Bridge Movement Model. Eagles ranged over a huge area of central-eastern Europe. Natura 2000 sites overlapped with 67% of the resulting 50% isopleth; i.e., a high probability of utilization of Natura 2000 areas by white-tailed eagles was found. White-tailed eagles used wetlands, waterbodies, and deciduous forests adjacent to wet habitats disproportionately often. Coniferous forests and settlements were avoided. Anthropogenically caused mortalities hardly occurred within Natura 2000 sites. Our study suggests that the Natura 2000 network is a crucial tool for conserving the white-tailed eagle. This top predator is an ambassador for the Natura 2000 idea during all life stages, and should continue to be a conservation priority of the network.
]]>Diversity doi: 10.3390/d16030144
Authors: Huizhong Pang Kaixuan Zheng Wenbo Wang Mingjuan Zheng Yulong Zhang Daochuan Zhang
Artemia is a genus of halophilic zooplanktons comprising bisexual and parthenogenetic forms, which is an important model for investigating adaption to hypersaline ecosystems. The genus Artemia in China comprises four species: A. sinica, A. tibetiana, A. franciscana and A. parthenogenetica. To investigate the evolutionary relationship of bisexual and parthenogenetic Artemia in China, we analyzed the morphometrics and phylogenetics among twenty-two geographical populations in China. We found significant morphological differentiation across different species and strains of Artemia in China, which exhibited a high level of intra-population variation. We also found overlaps in morphological characteristics between populations, which may raise challenges for the classification of Artemia species using traditional morphological methods. A. franciscana, which originated from various regions in America, was generally distributed along the Chinese coastlines through multiple human introductions. Additionally, native Asian clades split into Western and Eastern Lineages during the late Miocene due to the Himalayan orogeny. Within the Western Lineage, A. tibetiana can be grouped into three taxon units: A. tibeitiana, A. sorgeloosi and A. urmiana. We also found that the distribution and genetic structure of A. sinica were influenced by climate oscillations during the Pleistocene, which might play a pivotal role in driving the formation of parthenogenetic strains in the Eastern Lineage. Overall, our study provides new insight into invertebrate evolution under geographical and climatic impacts in hypersaline environments.
]]>Diversity doi: 10.3390/d16030143
Authors: Yan Liu Ying He Yue Tian Zhengwu Zhao
The species number of bryophytes is the second highest among land plants. Alpine grasslands on the Qinghai–Tibet Plateau (QTP) are the largest among global alpine biomes. However, bryophyte flora in alpine grasslands on the QTP remains poorly explored relative to its large geographic extent. A total of 347 plots were surveyed across the QTP, and 149 bryophyte taxa in 24 families and 49 genera were recorded in alpine grasslands. The largest family was Pottiaceae, followed by Bryaceae and Brachytheciaceae. The most species-rich genus was Bryum, followed by Didymodon and Brachythecium. The dominant species were Didymodon tectorus, Didymodon fallax, Bryum caespiticium, Didymodon constrictus, and Didymodon ditrichoides. The Jaccard similarity indexes of bryophyte compositions between alpine meadow and alpine steppe at the family, genus, and species levels were 0.375, 0.367, and 0.282, respectively. Turf was the most common life-form (75.2%), followed by weft (16.1%) and cushion (5.4%). Endemic species to China accounted for 8.05% of the total taxa. Bryophyte diversity in alpine grasslands on the QTP is exceptional and irreplaceable. The changes in species composition and life-forms between different grassland types reflect the adaptations of bryophytes to harsh environments.
]]>Diversity doi: 10.3390/d16030142
Authors: Chloé Julie Loïs Fourreau Daniela Pica Emmeline A. Jamodiong Guillermo Mironenko Castelló Iori Mizukami James Davis Reimer
The association between two hydrozoans, Stylaster sp. and Millepora spp., has been described as a case of pseudo-auto-epizoism, and has only been reported from the Caribbean region of the Atlantic Ocean. Here, we report on the occurrence of this association in the Pacific Ocean on coral reefs around Iriomote-jima Island, Japan, suggesting the association to be more widespread than had previously been thought. Moreover, Stylaster sp. colonies were observed living healthily on bleached and dead branches of Millepora spp., indicating that this interaction is facultative. The interaction reported here differs from the relationship between the Caribbean Stylaster roseus and Millepora alcicornis by the connection points between the two partners, which is made evident by the whitening of the Millepora counterpart in Iriomote-jima Island, while being seamless in the Caribbean association. Further research is necessary to fully understand the nature of these relationships, comprehending under what conditions it occurs, and establishing which species are involved in the interactions.
]]>Diversity doi: 10.3390/d16030141
Authors: Chunfang Liao Kevin D. Hyde Kandawatte Wedaralalage Thilini Chethana Wei Dong Yunhui Yang Mingkwan Doilom
During a survey of fungi on Wurfbainia villosa in Guangdong Province, China, three novel species, Periconia endophytica, P. yangjiangensis, and P. wurfbainiae, belonging to Periconiaceae in Pleosporales, Dothideomycetes are proposed based on morphological and phylogenetic evidence. Periconia endophytica was isolated from the healthy leaves of W. villosa, while P. yangjiangensis and P. wurfbainiae were obtained from the dead stems of the same host. Notably, holomorphs were observed in P. wurfbainiae. The morphological characteristics of the novel taxa are compared with closely related species within Periconia. Illustrations, morphological descriptions, and phylogenetic analyses are provided for the novel taxa. Multilocus phylogeny of the combined internal transcribed spacer (ITS), large subunit nuclear rDNA (LSU), small subunit nuclear ribosomal rDNA (SSU), and partial translation elongation factor 1–α (tef1-α) regions supported the establishment of three new species. Furthermore, the taxa clustering in Periconia, Flavomyces fulophazii, and Sporidesmium tengii, are discussed for further investigation of their taxonomic placements.
]]>Diversity doi: 10.3390/d16030140
Authors: Anna Marková Martina Orosová František Marec Daniel Barčák Mikuláš Oros
In this study, we performed a cytogenetic analysis of Acanthocephalus lucii specimens from three sites with different levels of environmental pollution. Standard and fluorochrome staining (CMA3/DAPI), fluorescence in situ hybridization (FISH) with 18S rDNA and histone H3 probes, and silver impregnation were performed. Chromosome complements of 2n = 7/8 (male/female), n = 1m + 2sm + 1a (X), and CMA3-positive bands in all chromosomes were found in all three populations. FISH revealed one 18S rDNA locus on the X chromosome and one locus of H3 histone genes on the first chromosome pair. At the intraspecific level, the populations differed in the presence of supernumerary B chromosomes, which were found in all specimens from Zemplínska Šírava and in 89.4% of specimens from the Laborec River, but not at the reference site. The first two sites are considered to be water bodies with high toxin contamination. Based on this fact, we assume an increased frequency of chromosome breaks leading to the formation of DNA fragments that have the potential to form B chromosomes. The present results add to the very limited data on the organization of multigene families in the genome of Acanthocephala and suggest a possible causal link between water pollution and the occurrence of B chromosomes in fish parasites.
]]>Diversity doi: 10.3390/d16030139
Authors: Lei Liu Chao Mou Fu Xu
Camera traps play an important role in biodiversity monitoring. An increasing number of studies have been conducted to automatically recognize wildlife in camera trap images through deep learning. However, wildlife recognition by camera trap images alone is often limited by the size and quality of the dataset. To address the above issues, we propose the Temporal-SE-ResNet50 network, which aims to improve wildlife recognition accuracy by exploiting the temporal information attached to camera trap images. First, we constructed the SE-ResNet50 network to extract image features. Second, we obtained temporal metadata from camera trap images, and after cyclical encoding, we used a residual multilayer perceptron (MLP) network to obtain temporal features. Finally, the image features and temporal features were fused in wildlife identification by a dynamic MLP module. The experimental results on the Camdeboo dataset show that the accuracy of wildlife recognition after fusing the image and temporal information is about 93.10%, which is an improvement of 0.53%, 0.94%, 1.35%, 2.93%, and 5.98%, respectively, compared with the ResNet50, VGG19, ShuffleNetV2-2.0x, MobileNetV3-L, and ConvNeXt-B models. Furthermore, we demonstrate the effectiveness of the proposed method on different national park camera trap datasets. Our method provides a new idea for fusing animal domain knowledge to further improve the accuracy of wildlife recognition, which can better serve wildlife conservation and ecological research.
]]>Diversity doi: 10.3390/d16030138
Authors: Sonthaya Phuynoi Charuay Sukhsangchan Ran Xu Xiaodong Zheng
The external morphology and morphological variations of Sepiella inermis vary across regions, necessitating investigation. However, the histological information on the subcutaneous gland has been insufficient to describe it. In this study, specimens were systematically collected and characterized from the Gulf of Thailand. Regarding external morphology, female cuttlebones exhibit greater width and more pronounced curves compared to males, while males feature 17–19 white dots along the fin margins. The presence of the subcutaneous gland was discerned during the embryonic stage at stage 19. A histological study of the subcutaneous gland illustrated the structure and development of the gland in both embryonic and adult stages, with four layers of membranes covering the gland. In the adult stage, trabeculae are dispersed throughout the gland, whereas in the embryonic stage, they form four distinct lines. The morphometric analysis revealed significant differences between males and females (p < 0.05) and the morphological variations within both sexes across the seven study areas exhibit significant differences (p < 0.05). According to the discriminant analysis results, there were significant differences (p < 0.05) between the groups in Surat Thani Province. Examining the length–weight relationship between dorsal mantle length and body weight showed significant differences between the sexes, indicating an allometric growth.
]]>Diversity doi: 10.3390/d16030137
Authors: Christoph Muster Jan Korba Petr Bogusch Petr Heneberg František Šťáhlavský
Morphological stasis is a widespread characteristic of pseudoscorpions, suggesting that much cryptic diversity remains unexplored. Here, we revise the polytypic species Dactylochelifer latreillii in the framework of an integrative taxonomic approach, using DNA barcoding, multivariate ratio analysis, geometric morphometry of the male foretarsus, and genitalic morphology. The pattern of mitochondrial variation suggests three species-level entities in central Europe, which widely overlap in morphospace, but differentiate in the structure of the female genitalia, and by their ecology. Dactylochelifer latreillii (Leach) is a halobiont species, occurring exclusively in coastal habitats and in Pannonian salt steppes, and D. l. septentrionalis Beier syn. nov. is a junior synonym of the nominate species. Dactylochelifer degeerii (C. L. Koch) stat. rev. is the oldest available name for an inland species that has long been mistaken for the nominotypical subspecies of D. latreillii. New habitat information suggests a preference for higher shrub vegetation. Dactylochelifer ninnii (Canestrinii) stat. rev. is a halophilic Mediterranean species that extends to the northern limits of the Pannonian basin. The distinctiveness of the Mediterranean “form” was recognized by early naturalists in the 19th century, but was ignored by later authorities in the field.
]]>Diversity doi: 10.3390/d16030136
Authors: Sebastián Flores-Chacón Gonzalo Carreño Carlos Maldonado Rodrigo Contreras-Soto
Phenotypic characterization of the variability present within bottle gourd has been limited to morpho-agronomic traits, and this evaluation is a prerequisite for a bottle gourd breeding program. Despite playing an important role in the phenotypic variation in plants, the root system has limited use in studies of morphological diversity. Thus, the objective of this study was to characterize the morphological diversity present in bottle gourd accessions of different countries based on roots and morpho-agronomic traits. The magnitude of morphological diversity and divergence among nineteen bottle gourd accessions that represent nine different countries of origin were evaluated with analysis of variance, principal component analysis, and an agglomerative hierarchical clustering (AHC) analysis. ANOVA for morpho-agronomic and root traits revealed significant morphological effects among the accessions, suggesting substantial differences among the bottle gourd accessions. The nineteen accessions were grouped into three clusters, and while these were not grouped according to the country of origin, clear differences among the roots and flowering traits were observed between the L. siceraria var. hispida with L. siceraria var. siceraria accessions, which were confirmed with the AHC analysis, revealing the divergence between these varieties and the opportunities for rootstock breeding programs.
]]>Diversity doi: 10.3390/d16030135
Authors: Gladys Kinya James Gitundu Kairo Rossa Ngendo Nyoike Josphat Gachoki Nguu Brian Kiiru Githinji Michael N. Githaiga
Mangroves offer a range of globally acknowledged advantages, yet they continue to be lost and degraded. Efforts to restore lost mangroves using conventional techniques in high-energy areas result in low success rates due to the removal of seedlings via wave action. We assessed the efficacy of using modified Riley Encasement Methods in the restoration of mangroves in high-energy areas in Gazi Bay, Kenya. Vegetation and soil baseline data were collected in 49 square plots of 100 m2, which were established along belt transects perpendicular to the shoreline. The following mangrove vegetation data was collected: species composition, tree height (m), and stem diameter (cm). From these, the importance value index (IV), basal area, and standing density (stems/ha) were derived. Sediment cores were made in the center of each square plot for carbon and grain size analysis. Mangrove (Rhizophora mucronata) planting adopted a randomized complete block design (RCBD) in which the planting area was divided into three blocks (A, B, C). Within each block, treatments (bamboo and different-sized PVC pipes) were randomly assigned locations. The results of the study reveal significant variations in survival and growth rates among treatments. Higher survival rates were recorded for seedlings grown within PVC encasements (43%), surpassing bamboo (1%) and control groups (4%). Our findings suggest that PVC pipes were efficient in supporting and protecting seedlings from external forces. We expound on the implications of the results and highlight potential enhancements for the effectiveness of encasement technique in mangrove restoration.
]]>Diversity doi: 10.3390/d16030134
Authors: Sonja Huč Avery S. Hiley Marina F. McCowin Greg W. Rouse
Pilargidae is a family of free-living and burrowing marine annelids. A lack of available molecular data for most of these species has precluded a molecular assessment of their phylogenetic relationships and has left uncertain the placement of Antonbruunia, which is hypothesized to be either a member of Pilargidae or its sister clade, the monotypic family Antonbruunidae. In this study, we describe the new species Antonbruunia milenae sp. nov., found at 845 m of depth off the coast of San Diego, California, USA, and we address the phylogeny of these organisms using 15 novel mitogenomes and multiple Sanger-sequenced loci. Our results show that Antonbruunia falls within Pilargidae, making Antonbruunidae a junior synonym of Pilargidae. Glyphohesione was transferred from Pilarginae to Synelminae, the previously unassigned genera Otopsis and Antonbruunia were shown to belong within Synelminae, and Hermundura was assigned to Phyllodocida incertae sedis. Sigambra was found to be non-monophyletic. Four different mitogenome gene orders were found among Pilargidae. Changes between the gene orders and the ancestral state gene order of the family were inferred. Two species have introns within the COI gene. These efforts represent a significant expansion of the available molecular resources for pilargids, as well as the basis for a more stable taxonomy.
]]>Diversity doi: 10.3390/d16030133
Authors: David Lariviere Val Anderson Robert Johnson Randy Larsen
Wright fishhook cactus is a small globose cactus endemic to an area of 280,000 ha in south-central Utah and was listed as endangered in October of 1979 by the U.S. Fish and Wildlife Service (USFWS). There is a general paucity of information about this species, and no published data on the seed bank for any species in the genus. Our objective with this study was to provide insight into the established seed bank density for this species. We processed 500 soil samples from various locations near individual cacti and potential neighboring nurse plants. We found that the species had a detectable seed bank of a size similar to other members of the Cactaceae family. Seed bank densities were the highest immediately adjacent to, and downslope from, parent plants. Our data indicate that areas within 20 cm of seed-producing cacti contain by far the greatest density of seeds. These areas should be given special consideration in future management plans for this species.
]]>Diversity doi: 10.3390/d16030132
Authors: Aleksandra Miernik Filip Wieczorkiewicz Sebastian Student Izabela Poprawa
The surge in pharmaceutical consumption, particularly non-steroidal anti-inflammatory drugs (NSAIDs) such as ibuprofen, has raised concerns about their presence in aquatic ecosystems. This study investigated the potential ecological impact of ibuprofen, focusing on the ultrastructure of storage cells in the tardigrade Paramacrobiotus experimentalis, renowned for its resilience to environmental stressors. Individuals were exposed to three ibuprofen concentrations (0.1 μg/L, 16.8 μg/L, and 1 mg/L) over 7 and 28 days. Storage cells were examined using light microscopy, transmission electron microscopy, and confocal microscopy. This study also explored ibuprofen’s impact on the process of anhydrobiosis. In the short-term experiment, no ultrastructural changes in tardigrade storage cells were observed across ibuprofen concentrations. However, in the long-term incubation, autophagic structures in storage cell cytoplasm were identified, indicating potential adaptive responses. Individual mitochondria exhibited degeneration, and the rough endoplasmic reticulum displayed slight swelling. No evidence of increased oxidative stress or nuclear DNA fragmentation was observed in any research group. This study elucidates the complex responses of tardigrade storage cells to ibuprofen exposure. The findings emphasize the importance of understanding pharmaceutical impacts on aquatic organisms, highlighting the resilience of tardigrades to specific environmental stressors.
]]>Diversity doi: 10.3390/d16030131
Authors: Gad Perry Robert D. Cox
Conservation traditionally focuses on at-risk species and relatively intact ecosystems. As the human population and our global impact have risen, many more species and ecosystems are at risk and fewer intact ecosystems remain, with urbanization being a major contributing factor. Cities and their inhabitants are here to stay, and the prevalence of urbanization, often in the vicinity of areas of high conservation value, requires reconsideration of the conservation value of urban ecosystems and urban green spaces. Our aim is to explore the practical aspects of such actions. Urban ecosystem regeneration will require the incorporation of strategies for urban ecosystem regeneration into an overall conservation policy. The novel paradigm of urban ecosystem regeneration, advocated here, maximizes the capacity of urban spaces to support biodiversity while reducing undesirable outcomes and enhancing human wellbeing. The potential for cities to exacerbate biological invasion, climate change, and other ecosystem-degrading factors requires particular attention in devising a strategy for conservation in urban spaces, made essential by the predicted further spread of cities across the globe.
]]>Diversity doi: 10.3390/d16030130
Authors: Luca Bracchetti Martina Capriotti Massimiliano Fazzini Paolo Cocci Francesco Alessandro Palermo
The effects of the climate crisis are affecting ecosystems at different scales and magnitudes. This paper focuses on a massive Mediterranean mussel die-off observed along the middle Italian Adriatic coast in the summer of 2022. We considered the possible environmental causes of this phenomenon and carried out a climatic analysis of the last decade. We performed field surveys in different locations along a 16 km coastal stretch from Martinsicuro (TE) in the south, to Grottammare (AP) in the north. The study area includes two marine Sites of Community Importance under the European Natura 2000 network. The die-off of the mussels was observed in practically all the natural mussel beds colonizing the study area. As sessile filter-feeding organisms inhabiting the intertidal zone, mussels are highly exposed to variations in environmental conditions such as temperature and nutrient load. We discuss the possible causes of this die-off, proposing that high temperature and the scarce availability of food acted simultaneously as stress factors, generating local unsustainable living conditions for this species.
]]>Diversity doi: 10.3390/d16030129
Authors: Joonhyung Jung Tae-Hee Kim Seog Woo Kwon Hyun Ji Park In Suk Choi Joo-Hwan Kim
Plastome sequences are crucial in plant studies due to their role in examining genomic evolution, understanding phylogenetic relationships, and developing molecular markers. Despite the collection of information about Korean figs, their genomic data remain underexplored. We utilize next-generation sequencing and PCR techniques to investigate genomic data and to develop and validate molecular markers. In this study, we characterize the complete plastomes of Korean figs: F. erecta, F. erecta var. sieboldii, F. sarmentosa var. nipponica, and F. sarmentosa var. thunbergii, which range in length from 160,276 to 160,603 bp. These genomes comprise 78 plastid protein-coding genes, 30 tRNA, and four rRNA, with the exception of one pseudogene, infA. We discovered that F. erecta and F. erecta var. sieboldii share identical plastome sequences. Phylogenomic analysis indicates the monophyly of Ficus, although the relationships among its subgenera remain unclear. We discovered that Ficus possesses 467 molecular diagnostic characters in its plastid protein-coding genes compared to other Moraceae groups, and F. erecta exhibits 33 molecular diagnostic characters. Single nucleotide polymorphisms in ndhD, petA, and rbcL were effectively used to develop molecular markers for distinguishing F. erecta from other figs. Additionally, we provided a straightforward PCR protocol for utilizing these newly developed molecular markers.
]]>Diversity doi: 10.3390/d16020128
Authors: Magne Husby
Wind power is commonly used to reduce greenhouse gas emissions but often has negative effects on biodiversity. In this study, I investigated the effects of wind farm and power line construction on the territory status of the Eurasian goshawk Accipiter gentilis, whether fledglings were produced or not, and the number of fledglings. Included were 55 goshawk territories investigated before and after the construction period. I found that the territory status declined significantly in the influence area within 3 km from the disturbance compared to the control area more than 7 km away. Interestingly, the decline in territory status was similar in the distance categories 0–1 km, 1–2 km, and 2–3 km, while there was nearly no change in territory status in the control area, thus indicating that the influence area from this kind of disturbance was minimum 3 km from the nest. The number of breeding pairs declined significantly during the construction period only in the influence area. Possible reasons might be higher mortality caused by collisions with power lines, desertion, avoidance of the areas with noise and disturbance from the constructions, and possible indirect effects caused by reductions in prey species. I found no effects of the construction on the number of fledglings.
]]>Diversity doi: 10.3390/d16020127
Authors: Jesús A. Rivas Paola De La Quintana Marco Mancuso Luis F. Pacheco Gilson A. Rivas Sandra Mariotto David Salazar-Valenzuela Marcelo Tepeña Baihua Penti Baihua Gordon M. Burghardt Freek J. Vonk Emil Hernandez Juán Elías García-Pérez Bryan G. Fry Sarah Corey-Rivas
Anacondas, genus Eunectes, are a group of aquatic snakes with a wide distribution in South America. The taxonomic status of several species has been uncertain and/or controversial. Using genetic data from four recognized anaconda species across nine countries, this study investigates the phylogenetic relationships within the genus Eunectes. A key finding was the identification of two distinct clades within Eunectes murinus, revealing two species as cryptic yet genetically deeply divergent. This has led to the recognition of the Northern Green Anaconda as a separate species (Eunectes akayima sp. nov), distinct from its southern counterpart (E. murinus), the Southern Green Anaconda. Additionally, our data challenge the current understanding of Yellow Anaconda species by proposing the unification of Eunectes deschauenseei and Eunectes beniensis into a single species with Eunectes notaeus. This reclassification is based on comprehensive genetic and phylogeographic analyses, suggesting closer relationships than previously recognized and the realization that our understanding of their geographic ranges is insufficient to justify its use as a separation criterion. We also present a phylogeographic hypothesis that traces the Miocene diversification of anacondas in western South America. Beyond its academic significance, this study has vital implications for the conservation of these iconic reptile species, highlighting our lack of knowledge about the diversity of the South American fauna and the need for revised strategies to conserve the newly identified and reclassified species.
]]>Diversity doi: 10.3390/d16020126
Authors: Alan N. Andersen François Brassard Benjamin D. Hoffmann
Australia’s monsoonal (seasonal) tropics are a global centre of ant diversity, but are largely unrecognised as such because the vast majority of its species are undescribed. Here we document another case of undescribed hyper-diversity within a taxon that is formally recognised as a single, widespread species, Meranoplus ajax Forel. We recognise 50 species among 125 specimens of M. ‘ajax’ that we CO1-barcoded, integrating CO1 clustering and divergence, morphological differentiation and geographic distribution. A large proportion (44%) of these species are represented by single records, indicating that very many additional species are yet to be collected in this extremely remote and sparsely populated region. Sampling has been concentrated in the Northern Territory, where 27 of the 50 species occur. If diversity in Western Australia and Queensland were similar to that in the Northern Territory, as appears likely, then the M. ajax complex would comprise >100 species. In 2000, when Australia’s monsoonal ant fauna was estimated to contain 1500 species, Meranoplus ajax was considered to represent a single species. Our previous analyses of a range of other taxa have shown that their diversity has been similarly under-appreciated in this estimate. Our findings suggest that the total number of ant species in monsoonal Australia is several thousand, which would make the region by far the world’s richest known.
]]>Diversity doi: 10.3390/d16020125
Authors: Puwadol Chawengkul Patsakorn Tiwutanon Nuttha Sanevas Ekaphan Kraichak
Leucobryum aduncum is a moss species reported in many Southeast Asian regions, often found in forests with a high humidity. Climate change may impact the future distribution of this species. This study aimed to model the current distribution and predict the impact of climate change on L. aduncum distribution in the next 50 years across Southeast Asia. In the process, relevant climate variables in the distribution of the species were also identified. The occurrence data of this species with current and future climate models from CMIP6 under moderate (SSP2) scenarios were used to predict current and future L. aduncum distributions. Under the current climate, the predicted suitable areas for L. aduncum included most mountainous areas. However, many Southeast Asian areas showed a lower probability of finding this species in the next 50 years. The distribution area of this species will dramatically decrease by 50.16% in the current area. The most important ecological variables included the “mean temperature of the driest quarter” and the “annual temperature range”. This study suggests the possible impacts of an increased temperature and the scale of climate change on the distribution of sensitive plants like bryophytes.
]]>Diversity doi: 10.3390/d16020124
Authors: Mi-Jin Hong Seongho Yun Min-Seung Yang Hye-Jeong Jeon Jeong-Chil Yoo Who-Seung Lee
Marine debris from fishing-related paraphernalia poses a threat to the survival of marine organisms, especially seabirds. Although the detrimental effects of marine debris on seabirds have been documented, studies on the extent of damage inflicted by marine debris on the seabird breeding population are scarce. Here, marine debris ingestion and entanglement damage to black-tailed gulls (Larus crassirostris) residing in South Korea were quantified. The five breeding colonies of black-tailed gulls were visited, and the frequency of ingestion and entanglement damage in adults and young were recorded. A total of 25 cases of marine debris damage were confirmed. As a result, damage by marine debris to gulls varied depending on breeding colonies. More adults suffered from entanglement damage than the young, and their most damaged parts were usually their legs. Fishing lines and hooks caused the most damage. We suggest that marine debris damage acquired in breeding colonies could affect breeding success.
]]>Diversity doi: 10.3390/d16020123
Authors: Marian Stój Robert Kruszyk Dorota Zawadzka Grzegorz Zawadzki
The Golden Eagle Aquila chrysaetos (hereafter GE) is one of Europe’s largest avian top predators. The present study recognizes the habitat characteristics and food composition of the GE in Poland. The research was carried out in the Polish part of the Carpathian Mountains. The GEs built nests mainly on old coniferous trees and strongly preferred the Silver Fir Abies alba. On average, within a 5 km buffer around the nest, forests covered about 2/3 of the area, while open land with villages was at 31% and water was about 1%. Birds preferred areas with less forest cover than in the random points, but the nests were significantly further from the countryside than the distance measured for the drawn points distributed in the GEs’ range in Poland. Their diet during the breeding season was assessed by analyzing pellets and food remains. The proportion of birds was 55.7%, mammals was 43.4%, and reptiles was 0.9%. The ten most common prey species included the Domestic Pigeon Columba livia, the Ural Owl Strix uralensis, the Tawny Owl Strix aluco, the Buzzard Buteo buteo, the Roe Deer Capreolus capreolus, the Martens Martes sp., and the Red Fox Vulpes vulpes, which composed 70% of food items. Our results showed that the GE is a top predator, as evidenced by the high share of other predators—both mammal and bird species—in its diet, which constituted about 34% of identified preys. The diet of the studied GE population showed geographical variation, suggesting local adaptations to available prey species. The share of Roe Deer increased from west to east, indicating a higher availability in the less urbanized eastern part of the country. An analysis of general food categories showed that, as latitude increased, the share of captured birds among prey of the GEs declined, while the percentage of forest prey increased. Pigeons were prey of the GEs mainly in the western part of their range. The GEs often captured species with nocturnal activity—owls and martens, which were identified in most of the GEs’ territories. The proportion of mammals in the diet of the GE increased with an increase in the proportion of open areas, while the abundance of birds of prey and owls in the diet correlated with a higher proportion of forests. The greatest threat to Poland’s GE population is the reduction in semi-open areas with low human activity and low human population densities.
]]>Diversity doi: 10.3390/d16020122
Authors: Enkh-Amgalan Jigjiddorj Amarbayasgalan Maidarjav Bumtsend Byambasuren Daritsogzol Nyamgerel
Endophytic fungi colonize the inner tissues and provide direct and indirect benefits to plants. Although Mongolia is rich in medicinal plants, due to climatic and anthropogenic reasons, the resources are being depleted, and many species are under threat of gradual extinction, while the endophytic fungi of Mongolian plants are largely unknown. In this study, a total of 24 culturable endophytic fungal strains were isolated from Cynomorium songaricum (Rupr.), a medicinal and vulnerable plant species of Mongolia. Based on the morphological characteristics and the sequences of the rDNA internal transcribed spacer (ITS) region, the isolates were identified into six genera: Fusarium (8), Clonostachys (7), Penicillium (6), Alternaria (1), Aspergillus (1), and Madurella (1). The antimicrobial activity was assessed by the agar-diffusion method, revealing that 15 strains were able to inhibit the growth of at least one of the test organisms. Among them, 1 strain showed inhibitory activity against Escherichia coli, 12 against Bacillus subtilis, 13 against Staphylococcus aureus, and 8 against Aspergillus niger, respectively. The ability to solubilize complex phosphorus and zinc minerals was observed in 3 and 21 strains, respectively, and the production of indole-3-acetic acid (IAA) was detected in nine strains in the presence of tryptophan. Our study provides the first insight into the cultivable endophytic fungal composition of C. songaricum, parasitizing the roots of Nitraria sibirica growing in the Gobi Desert of Mongolia. The resulting fungi, which have antimicrobial and plant growth-promoting properties, were preserved in the national culture collection and can be used to further exploit their biotechnological potential, as well as for the propagation of endangered and vulnerable medicinal plants.
]]>Diversity doi: 10.3390/d16020121
Authors: Lenka Minichová Vladimír Slobodník Roman Slobodník Milan Olekšák Zuzana Hamšíková Ľudovít Škultéty Eva Špitalská
Haemosporidians are a group of vector-borne parasites belonging to the order Haemosporida. These parasites infect avian hosts and require blood-sucking insects (Diptera) for transmission. The occurrence and diversity of haemosporidian parasites are shaped primarily by the specificity of the parasite and the susceptibility of the host/vector. In this study, the presence and distribution of haemosporidians in blood samples from birds in urbanized and natural habitats were estimated using microscopic and molecular approaches. Birds in urbanized habitats were infected with four different species of Plasmodium, P. relictum, P. vaughani, P. matutinum, and P. circumflexum, and one species of Haemoproteus, H. parabelopolskyi, and Leucocytozoon sp. The species H. attenuatus, H. concavocentralis, H. minutus, H. pallidus, H. noctuae, and H. tartakovskyi were additionally identified in birds in natural habitats. Typically, juvenile birds are essential markers of parasite species transmitted in the study area. The juveniles in the urbanized habitats carried P. relictum, P. vaughani, P. circumflexum, H. parabelopolskyi, and Leucocytozoon species. The most abundant parasite was H. parabelopolskyi, which was found in both habitat types. The prevalence of Haemoproteus/Plasmodium species determined by nested PCR in birds in natural habitats (43.80%; 53/121) was significantly greater than that in birds in urbanized habitats (21.94%; 43/196) (p < 0.05). There was no significant difference in the infection rate of Leucocytozoon sp. between the habitat types (p > 0.05; 10/121 vs. 19/196).
]]>Diversity doi: 10.3390/d16020120
Authors: Alice Oprandi Stefano Aicardi Annalisa Azzola Fabio Benelli Marco Bertolino Carlo Nike Bianchi Mariachiara Chiantore Maria Paola Ferranti Ilaria Mancini Andrea Molinari Carla Morri Monica Montefalcone
In the Mediterranean Sea, the bivalve genus Pinna is represented by two species: the endemic Pinna nobilis and the (sub)tropical Atlantic Pinna rudis. P. rudis is generally less common and mostly restricted to the warmer regions of the western Mediterranean. However, since a mass mortality event, caused by a pathogen infection, has brought P. nobilis to the brink of extinction, records of P. rudis have increased in several Mediterranean regions, where it had not been previously observed. This paper reports on the presence of several P. rudis individuals in the Ligurian Sea, the northernmost reach of this species in the western Mediterranean. P. rudis has become increasingly common between 2021 and 2023, with a total of 28 new records from seven localities along the Ligurian coast. The size of the individuals and their estimated growth rate (3.6 cm·a−1) indicated that a recruitment event most likely took place in summer 2020, when P. nobilis was no longer present in the area. Our observations suggest that the recruitment success of P. rudis increased following the decline of P. nobilis. However, considering the thermophilic nature of P. rudis, in all likelihood, the ongoing water warming is playing a crucial role in the successful establishment of this species in the Ligurian Sea. A full understanding of the recent range expansion of P. rudis in the Mediterranean is far from being achieved, and whether P. rudis will be able to fulfil the ecological role of P. nobilis is difficult to predict. Large scale monitoring remains the only effective way to know about the future of Pinnids in the Mediterranean Sea.
]]>Diversity doi: 10.3390/d16020119
Authors: Joseph S. Wilson Jacob G. Young Lindsey Topham Wilson
It is now widely recognized that bees are among the most important pollinators worldwide, yet the bee faunas of many regions and habitats remain inadequately documented. The Great Basin Desert in North America is thought to host some of the richest bee communities in the world, as indicated by several studies documenting diverse bee faunas in the region’s natural habitats. However, limited attention has been given to the bee communities present on agricultural lands within the Great Basin Desert. Here, we describe a rich bee community housed at the Young Living Lavender Farm in Juab County, Utah, near the eastern edge of the Great Basin Desert. Our survey of bees on this farm identified 68 bee species across 22 genera. This represents 34% of the bee species known from the county, including 34 new county records. Among the numerous flower species cultivated at the farm, we found that lavender supported the richest bee community, with 32 species collected from cultivated lavender fields. While lavender is frequently recommended for homeowners to plant in support of pollinators, our study is among the first to provide a list of bee species that visit lavender in western North America. Furthermore, our results demonstrate that agricultural lands, particularly those implementing pollinator-friendly farming practices, can support rich bee communities in the Great Basin Desert.
]]>Diversity doi: 10.3390/d16020118
Authors: Ying-Ying Zhang Ting Zhang Hai-Yan Li Ran Zheng Jie Ren Qin Yang Ning Jiang
The fungal genus Nigrospora is known to be a plant pathogen, endophyte, and saprobe, and it is usually isolated from various substrates like soil and air. During the surveys of soil fungi in Hebei Province of China, two isolates of Nigrospora were obtained. A multi-locus phylogeny of combined loci of the 5.8S nuclear ribosomal gene with the two flanking transcribed spacers (ITS), part of the translation elongation factor 1-alpha (tef1), and the beta-tubulin (tub2) loci, in conjunction with morphological characters were used to identify the newly collected isolates. Nigrospora humicola sp. Nov. is described and proposed herein, which differs from its phylogenetically close species N. chinensis and N. globosa by the sequences of ITS, tef1, and tub2.
]]>Diversity doi: 10.3390/d16020117
Authors: M. Olalla Lorenzo-Carballa Ricardo Koroiva
The Odonata is an order of insects commonly known as dragonflies and damselflies, with a worldwide distribution except in Antarctica [...]
]]>Diversity doi: 10.3390/d16020116
Authors: Chirlei Glienke Desirrê Alexia Lourenço Petters-Vandresen Aline da Silva Soares Souto Luciane Marinoni Manuela da Silva
As part of a Ministry of Science, Technology, and Innovation initiative, the Brazilian Societies of Botany, Microbiology, Virology, and Zoology conducted a comprehensive evaluation of biological collections in Brazil. This assessment aimed to gather insights into the current state of these collections, with the goal of providing support for future public policies, including financial subsidies and prioritization policies. In this context, we present the findings related to microbiological collections, essential to ex situ biodiversity conservation and crucial in supporting research, development, and innovation. A survey was distributed to public and private institutions across Brazil, yielding responses from 168 microbiological collections representing 79 different entities. Notably, 73 of these collections are affiliated with public research institutions and universities, underscoring the State’s pivotal role in preserving and safeguarding Brazilian microbial diversity. The primary taxonomic groups encompass bacteria (found in 70.24% of collections) and fungi (comprising 52.98% of collections), sourced from diverse Brazilian ecosystems and biomes, including those that contain several type strains. Furthermore, the collections preserve microorganisms harboring biotechnological potential applicable to environmental protection, public health, industry, and agribusiness. Despite these promising economic and biotechnological prospects, our meticulous data analysis has revealed significant limitations and vulnerabilities, especially regarding physical infrastructure and human resources, emphasizing the urgent need for interventions to guarantee their sustainability.
]]>Diversity doi: 10.3390/d16020115
Authors: Priscilla M. Ta Emily Griffoul Quinn Sorenson Katharina T. Schmidt Isaac Ostmann Travis E. Huxman Jennifer J. Long Kathleen R. Balazs Jutta C. Burger Megan Lulow Sarah Kimball
Removal of non-native plants is known to increase overall native cover within degraded communities that contain at least a small percentage of native plant cover. We investigated the mechanisms behind this pattern, asking whether removal of non-native annual species increases the density and species richness of the native community through increased seedling recruitment or through the growth of established native shrubs. We also investigated whether the effectiveness of non-native removal was influenced by region (coastal versus inland) and whether there was a threshold of native cover required for invasive removal to be effective. We established 13 study sites (7 coastal and 6 inland) located throughout the Nature Reserve of Orange County, CA, USA. Each degraded site contained four paired plots corresponding to a range of existing native plant cover: low 20–29%, medium-low 30–39%, medium-high 40–49%, and high cover 50–59% with one plot per pair subjected to non-native removal. We collected plant density, species richness, and established native shrub volume measurements to clarify the effectiveness of non-native removal. Non-native plant removal reduced non-native annual recruitment, increased that of native shrub seedlings, but had no impact on native forb recruitment. Non-native removal increased the number and reduced mortality of established native shrubs but did not influence shrub size. Native seedling density, species richness, and established native shrub number were highest inland, but coastal sites had larger adult shrubs. We found that non-native removal was most effective for increasing native density and species richness for degraded inland sites with less than 40% of existing native cover. The initial native cover did not affect established shrub volume or number. Our results confirm the importance of non-native plant removal in areas with medium-low or low native cover to increase native recruitment, species richness, adult shrub number, and to reduce established shrub mortality, especially during extreme drought.
]]>Diversity doi: 10.3390/d16020114
Authors: Grzegorz Hebda Jerzy Błoszyk
Uropodina mites are organisms regularly found in the breeding sites of vertebrates. However, studies devoted to the nest dwellers of hole-nesting birds have been performed nearly exclusively in artificial places, i.e., nest boxes. Here, we describe an assemblage of mites from the Uropodina group living in excavated tree holes. We performed this study in western Poland, sampling material from 49 tree holes excavated by great spotted and black woodpeckers. We divided the material extracted from the tree holes into three categories: wood debris, remnants of bird nests, and remnants of insects. In total, we found 12 species from the Uropodina group. The two most numerous species, Leiodinychus orbicularis and Chiropturopoda nidiphila, constituted ca. 93% of the assemblage. Two other species, Apionoseius infirmus and Uroobovella obovata, were also relatively frequent. Among the assessed factors (woodpecker species, tree hole characteristics, and type of material), only the presence of insect remains, predominantly bat guano, affected species diversity and mite abundance the most. Our study is the first to describe an assemblage of Uropodina species in excavated tree holes and discover two extremely rare mite species, Ch. nidiphila and Nanteria banatica, related to the presence of bat guano in these cavities.
]]>Diversity doi: 10.3390/d16020113
Authors: Mariam Oyefunke Oyedeji Amusa Ross Dylan Stewart Michelle van der Bank Ben-Erik van Wyk
The Meliaceae are broadly distributed worldwide, with about 50 genera and over 1400 species. There are 11 genera in South Africa, with 13 indigenous and three naturalized species. Considering the diversity of the indigenous species of this family in South Africa and the lack of recent studies encompassing these species, a taxonomic revision of the South African indigenous species of Meliaceae is presented here. Phylogenetic analysis, anatomical data, herbarium collections, and online data sources were used in this study. The results confirm the monophyly of Melioideae and Swietenioideae. The incongruence of Turraea previously reported was resolved in this study. Most representative genera of South African Meliaceae were recovered monophyletic with strong support. However, multiple samplings of species and including more markers could provide a better understanding of the relationships among South African species of Meliaceae. The review of the taxonomy of the South African Meliaceae, and especially the study of diagnostic characters and hitherto recorded natural distributions, have value in providing an up-to-date inventory of the indigenous genera and species and an easy means of identifying the taxa. Anatomical characters may be of systematic value to explore higher-level relationships in the family. This study is a contribution to tropical botany and to a more comprehensive database for the Meliaceae.
]]>Diversity doi: 10.3390/d16020112
Authors: Dae-Hun Kim In-Yeong Kwon Ho-Young Soh Man-Ki Jeong
This study assessed the taxonomic statuses of three lesser-known Magelona F. Müller, 1858 species collected from intertidal to sublittoral habitats in Korean coastal waters, basing identification on morphological features and comparing them with their closest congeners. We present a comprehensive description and illustration of taxonomically significant and standardized characters, covering all thoracic chaetigers of three newly discovered Magelona species from Korea. Within the documented Korean Magelona species, these three species exhibit the following distinctive characteristics. Magelona sachalinensis Buzhinskaja, 1985, possess diminutive superior dorsal lobes in the initial four chaetigers and specialized chaetae on chaetiger 9; Magelona lenticulata Gallardo, 1968, is characterized by foliaceous postchaetal superior dorsal lobes in chaetigers 1–8; and Magelona cf. longicornis Johnson, 1901, is distinguished by notably elongated noto- and neuropodial postchaetal lamellae on chaetiger 9. Methyl green staining patterns showed species-specific characteristics and were confirmed to be effective in distinguishing the examined Korean species from each other and useful for making comparisons with previously reported Magelona species. Our study suggests that further comprehensive research on the morphological and genetic characteristics of Magelona species will enhance our understanding of their diversity.
]]>Diversity doi: 10.3390/d16020111
Authors: Dajun Liu Hufang Zhang Shuhui Fu Yating Wang Wanqing Zhao Qing Zhao
Species of genus Aelia are important pests of wheat crops in arid areas. In this study, the mitogenomes of A. sibirica and A. fieberi were sequenced using high-throughput sequencing technology. The mitochondrial genome characteristics of both Aelia species were compared and analyzed, and the phylogenetic relationships of Pentatomidae were constructed based on protein-coding genes. In addition, the taxonomic status of the genus Aelia was confirmed. The results showed that the total length of the mitogenome sequences of A. sibirica and A. fieberi were 15,372 bp and 15,450 bp, respectively, including 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes, and a control region. By comparing the mitochondrial genome structure, base composition, codon usage, RNA secondary structure, and other characteristics, it was found that the mitochondrial genome characteristics of the two species were similar. Phylogenetic analysis showed that Phyllocephalinae and Asopinae both formed monophyletic groups, but the relationship between Podopinae and Pentatominae was not resolved. Within the subfamily Pentatominae, (Nezarini + Antestiini), (Aeliini + Carpocorini), and (Strachiini + Pentatoma) formed stable clades. Aelia sibirica and A. fieberi were found to be a stable sibling pair, and the clade was closely related to Dolycoris baccarum.
]]>Diversity doi: 10.3390/d16020110
Authors: Simone Fattorini
Vegetation tends to vary in a systematic fashion along elevational gradients, leading to the possibility of recognizing distinct vegetational belts, which are frequently used to describe and interpret elevational variations in biodiversity. However, anthropogenic changes can create landscapes dominated by secondary grasslands in areas formerly occupied by forests, thus altering the natural sequence of vegetation types. The present research illustrates how the distribution of tenebrionid beetles in central Italy is influenced by secondary vegetation. Classical schemes of vegetational belts were modified into a scheme of main vegetation types that include secondary vegetations. Tenebrionid species presence/absence in each vegetation type was then assessed. Species richness tended to decrease with elevation in both natural and secondary vegetations. Geophilous (ground-dwelling) species (which include many endemics) prevailed in natural and secondary grasslands, while xylophilous species (associated with trees) prevailed in the natural forests. Similarities in tenebrionid composition indicated the presence of two main groups: one associated with forests and the other with natural and secondary grasslands. Geophilous species prevailed among tenebrionids with Mediterranean distributions, whereas xylophilous species prevailed among species distributed mainly in Europe and the Palearctic. High values of richness, biogeographical complexity and proportion of endemics make secondary vegetations of high conservation concern.
]]>Diversity doi: 10.3390/d16020109
Authors: Katalin Náfrádi Pál Sümegi
The Rejtek I. Rock Shelter in the Bükk Mountains of the inner Western Carpathian region plays an important role in the Late Pleistocene and Holocene environmental historical analyses. The investigations of the cave sediment accumulated from the end of the Pleistocene and the recovered paleontological finds, together with the archaeological artefacts, provided an opportunity to develop stratigraphic classifications. In addition, by comparing archaeostratigraphic, lithostratigraphic and biostratigraphic data, it was possible to link environmental and prehistoric events. The importance of the site is shown by both the mollusc and floral cold- and warm-tolerant species that were present in the area during the Late Pleistocene. The early expansion of thermophilous species indicates the presence of a refuge already during the Late Pleistocene. Based on the documents of the excavation, the previous works, the sediment sequence, as well as the sediment samples and the filling material of the mollusc shells, together with the new chronology, we were able to clarify the relative order of the excavated layers and the description of the sediment types in the Rejtek I. Rock Shelter.
]]>Diversity doi: 10.3390/d16020108
Authors: Marcelo E. Oliva Luis A. Ñacari Ruben Escribano José L. Luque
The diversity of parasite communities is mainly driven by evolutionary history, as well as the ecology of the host species. To test whether the diversity of the parasite community of four related Stromateidae (Pisces: Scombriformes) is related to evolutionary history (the host phylogeny) or the host’s geographical distribution, we analyzed the metazoan parasite fauna of four species of fishes of this family, from the Pacific and Atlantic coasts of South America. Studied species were Peprilus snyderi (samples from Callao, Perú, and Antofagasta, Chile), Peprilus medius (Chorrillos, Perú), Peprilus paru (Rio de Janeiro, Brazil) and Stromateus stellatus (Talcahuano, Chile). Our multivariate analysis strongly suggests that the diversity of the parasite fauna of the studied fishes is driven mainly by the host’s geographical distribution and not the host phylogeny.
]]>Diversity doi: 10.3390/d16020107
Authors: Wenwen Zhang Shengjun Zhao Xiao Yang Jing Tian Xue Wang Ding Chen Yuan Yu Jie Shi Peng Cui Chunlin Li
Mountain ecosystems are crucial for global biodiversity conservation. However, their landscape features are constantly changing owing to urban expansion. Understanding the relationships between biotic communities and landscape features is essential for biodiversity conservation. This study aimed to examine the effect of land cover type on avian communities in Lishui, a mountainous urban area in eastern China. Avian surveys were conducted using 168 line transects in total across different land cover types once per season from December 2019 to January 2021. We assessed the diversity of bird communities by calculating various metrics at both taxonomic and functional levels. Among the land cover types measured, woodland, built-up land, cultivated land, and water bodies significantly influenced bird community diversity and composition. Species richness, species abundance, and functional richness were negatively correlated with the proportion of woodland but were positively correlated with the proportion of non-natural land cover, such as built-up and cultivated land. In contrast, functional evenness was positively correlated with the proportion of woodland and grassland but negatively correlated with the proportion of non-natural land cover. Land cover type also exhibited significant correlations with avian functional characteristics such as diet, foraging strata, and body mass, thereby influencing the overall community structure. Our results indicated that mountainous landscape patterns substantially affect avian communities. Different land cover types possess varying resource endowments that affect the distribution of avian species. Therefore, urban landscape planning in mountainous areas should carefully consider the various functions provided to organisms by different types of land cover to promote biodiversity.
]]>Diversity doi: 10.3390/d16020106
Authors: José Patricio O’Gorman
Elasmosaurids comprise some of the most extreme morphotypes of plesiosaurs. Thus, the study of their neck and vertebrae elongation patterns plays a crucial role in understanding the anatomy of elasmosaurids. In this study, the taphonomic distortion of the holotype of Elasmosaurus platyurus and its effects on the vertebral length index (VLI) values are evaluated, and a new index to describe the neck is proposed (MAVLI = mean value of the vertebral elongation index of the anterior two-thirds of neck vertebrae). The results provide a strong foundation for a new scheme of neck elongation patterns that divide the diversity of the neck elongation of plesiosauriomorphs into three categories: not-elongate (MAVLI < 95 and Max VLI < 100), elongate (125 > MAVLI > 95 and 100 < Max VLI < 135), and extremely elongated (MAVLI > 125 and Max VLI > 135).
]]>Diversity doi: 10.3390/d16020105
Authors: Laura Gavioli Neus Nualart Jordi López-Pujol Neus Ibáñez
The herbarium Trèmols, preserved in the Botanical Institute of Barcelona (IBB), was created during the second half of the 19th century by the Catalan chemist and botanist Frederic Trèmols Borrell (Cadaqués 1831–1900). He was a member of important scientific institutions, including the Real Acadèmia de Ciències i Arts de Barcelona, the Societat Botànica Barcelonesa, the Société Botanique de France, and the Société Helvétique pour l’Échange des Plantes. The value of this herbarium lies in the large volume of specimens that it preserves (12,953) and the high percentage (61.9%) of material of foreign origin that it contains. The Trèmols herbarium was completely digitised in 2019 as part of a wider study that is aimed to classify, digitise, document, review, and, finally, make the IBB historical herbaria available to the scientific community. Herein, we provide a general overview of the almost 13,000 specimens of this collection, which can give valuable insight into the flora that existed more than 100 years ago.
]]>Diversity doi: 10.3390/d16020104
Authors: Vahap Eldem Mehmet Ali Balcı
The NCBI SRA database is constantly expanding due to the large amount of genomic and transcriptomic data from various organisms generated by next-generation sequencing, and re-searchers worldwide regularly deposit new data into the database. This high-coverage genomic and transcriptomic information can be re-evaluated regardless of the original research subject. The database-deposited NGS data can offer valuable insights into the genomes of organelles, particularly for non-model organisms. Here, we developed an automated bioinformatics workflow called “OrgaMiner”, designed to unveil high-quality mitochondrial and chloroplast genomes by data mining the NCBI SRA database. OrgaMiner, a Python-based pipeline, automatically orchestrates various tools to extract, assemble, and annotate organelle genomes for non-model organisms without available organelle genome sequences but with data in the NCBI SRA. To test the usability and feasibility of the pipeline, “mollusca” was selected as a keyword, and 76 new mitochondrial genomes were de novo assembled and annotated automatically without writing one single code. The applicability of the pipeline can be expanded to identify organelles in diverse invertebrate, vertebrate, and plant species by simply specifying the taxonomic name. OrgaMiner provides an easy-to-use, end-to-end solution for biologists mainly working with taxonomy and population genetics.
]]>Diversity doi: 10.3390/d16020103
Authors: Francisco José Gómez-Marín Jesús Montoya-Mendoza Guillermo Salgado-Maldonado Fabiola Lango-Reynoso María del Refugio Castañeda-Chávez Benigno Ortiz-Muñiz
The objective of this work is to contribute to the knowledge of the freshwater macroinvertebrate communities of Los Tuxtlas, Veracruz, Mexico. For this region, there is only limited knowledge of its aquatic crustaceans and mollusks. A total of 13,399 freshwater macroinvertebrates were collected from four river sections in each of the three sub-basins of the region using the Surber network in four seasons of an annual cycle (2021–2022) and were preserved in 70° alcohol. Organisms belonging to seven phyla, nine (sub)classes, 21 (sub)orders and 65 families were identified. The most abundant orders were Ephemeroptera (42.03%), with greatest abundance of the family Baetidae, and the orders Trichoptera (19.11%), Diptera (15.43%), and Coleoptera (3.98%). Four families exceeded 10% relative abundance, and together they total 61.02%: Baetidae (23.84%), Hydroptilidae (13.58%), Leptohyphidae (13.03%), Chironomidae (10.57%), and Elmidae (3.23%). The order Plecoptera was recorded for the first time in Los Tuxtlas, with three families. The orders Hydrachnidae and Ostracoda, as well as six families of the order Ephemeroptera, with only one previously recorded family, and six more families of the order Diptera, were also documented. Two species of invasive aquatic mollusks were found in several rivers and basins. In this work, a high diversity of freshwater macroinvertebrates occurred compared to other sites studied in Veracruz and Mexico, and new records of these taxa are provided for the region of Los Tuxtlas.
]]>Diversity doi: 10.3390/d16020102
Authors: Anna Scheidel Victoria Borowicz
Root hemiparasites infiltrate the vascular tissue of host roots to acquire water and nutrients, which often reduces host growth. Hemiparasites are postulated to be keystone species in grassland communities if they suppress dominant species and increase plant community biodiversity, and ecosystem engineers if they increase nutrient accessibility for surrounding species. We examined keystone effects by evaluating species richness and evenness in 1 m2 plots in a recent prairie restoration where Castilleja sessiliflora was naturally present or absent, and in a longer-established prairie restoration with or without Pedicularis canadensis. We examined ecosystem engineer effects by determining nitrate and phosphate concentrations under, 25 cm from, and 50 cm from hemiparasites, and in the center of hemiparasite-free plots. On the C. sessiliflora site, plots with the hemiparasites had higher species richness due to more forbs and higher floristic quality, consistent with the keystone species hypothesis. Soil phosphate levels were also greater in plots with C. sessiliflora present, consistent with the hypothesis of ecosystem engineering by this hemiparasite. In contrast, plots with/without P. canadensis showed no associations of any community metrics with the hemiparasite, and no correspondence between the presence of hemiparasites and soil nutrients. Although hemiparasites can increase grassland community heterogeneity, the effect is not universal, and the direction and strength of effects likely depends on local conditions.
]]>Diversity doi: 10.3390/d16020101
Authors: William D. Pitman
Current land use and extensive modifications of natural ecosystems across the state of Louisiana are generally similar to those across the southeastern USA where rainfall supports forest ecosystems. Both intentional and unintentional consequences of ecosystem modifications from the scales of water and sediment movement across a field edge to state-wide loss of functional grasslands are legacies from previous development across the state. While major investments and large-scale, long-term plans are aspects of some continuing ecological issues across the state, small-scale, volunteer-led restoration of native grassland plant communities in the Louisiana Coastal Prairie illustrates the value associated with the restoration of natural ecosystem function in drastically disturbed environments. As is now becoming increasingly recognized, Louisiana grasslands represent less obvious components of forest, woodland, and wetland landscapes across the state, where they have contributed essential wildlife habitat, and ecosystem functions. These are now largely missing from many landscapes across the state and region. The strategic restoration of grassland functions combining novel native grass pastures and fully functional native grassland plant communities as landscape components could provide both economic and ecosystem benefits. Specific native grassland seed resources are needed for various restoration activities to enhance ecosystem function at a range of scales across the state and region.
]]>Diversity doi: 10.3390/d16020100
Authors: Bihong Liu Zhangxi Hu Changling Li Xianghu Huang Yulei Zhang
In order to investigate the effects of various nitrogen (ammonium) concentrations on the epibiotic bacterial community associated with Oocystis borgei, a metabarcoding sequencing method was employed. The 16S rDNA sequencing and bioinformatic analysis were conducted on cultures of O. borgei that were grown on four different nitrogen element concentrations (2.5, 10, 50, and 100 mg/L), and the differences in the epibiotic bacterial community and functions of O. borgei among different nitrogen concentrations were compared. The results showed that the chlorophyll a content of O. borgei increased with increasing nitrogen concentrations. A total of 43 operational taxonomic units (OTUs) were obtained from the four groups, which were categorized into 7 phyla, 9 classes, 18 orders, 21 families, and 26 genera. Winogradskyella was the dominant genus in the groups with 2.5 and 100 mg/L nitrogen, while Marinobacter and Winogradskyella were relatively abundant in the groups with 50 and 100 mg/L nitrogen. Functional analysis using PICRUST2 showed that the three most abundant gene functions were carbohydrate metabolism, amino acid transport and metabolism, ribosomal structure and biogenesis, and energy production and conversion. BugBase phenotypic analysis revealed that there were no significant differences in phenotypes between the groups with 2.5 and 10 mg/L nitrogen, while the group with 50 mg/L nitrogen exhibited higher abundance in aerobicity, biofilm formation, mobile genetic elements, and stress tolerance phenotypes. Most of the bacteria in this work belonged to the aerobic types. A redundancy analysis (RDA) of environmental factors demonstrated that nitrogen concentration showed a positive correlation with species changes in the groups with 10 and 50 mg/L nitrogen; chlorophyll a exhibited a positive correlation with species changes in the groups with 50 and 100 mg/L nitrogen. Nitrogen concentration significantly influenced the epibiotic bacterial community associated with O. borgei, leading to changes in dominant species and community structure. This study provides important references for understanding the functional characteristics of the epiphytic microbial community of O. borgei and the exploration of specific microorganisms.
]]>Diversity doi: 10.3390/d16020098
Authors: Maira Laraib Jessica Titocci Antonia Giannakourou Sofia Reizopoulou Alberto Basset
Phytoplankton guilds are commonly characterised by dominance effects, while the main contribution to biological diversity is given by rare species. Here, we analysed the influence of rare species on taxonomic and functional diversity, which is described by taxa richness and composition, cell size, and size–abundance relationships in phytoplankton guilds. We explore these relationships at global and regional scales by analysing phytoplankton guilds from five biogeographical regions: the Northern Atlantic Ocean (Scotland), the South-Western Atlantic Ocean (Brazil), the South-Western Pacific Ocean (Australia), the Indo-Pacific Ocean (Maldives), and the Mediterranean Sea (Greece and Turkey). We have comparatively analysed the phytoplankton taxonomic diversity of the whole dataset and with the datasets obtained by progressively subtracting taxa occurring in the last 1%, 5%, 10%, and 25% of both numerical abundance and overall biomass. Globally, 306 taxa were identified across five ecoregions with only 27 taxa accounting for 75% of overall numerical abundance and biomass; almost 50% of taxa were lost on every step. The removal of 1% of most rare taxa significantly affected the phytoplankton size–abundance relationships and body-size structure, strongly impacting on small taxa. The progressive removal of additional rare taxa did not further affect phytoplankton size–abundance relationships and size structure.
]]>Diversity doi: 10.3390/d16020099
Authors: Fabio Conti Giacomo Cangelmi Jamila Da Valle Fabrizio Bartolucci
The Herbarium Apenninicum (international code: APP), hosted in the Floristic Research Center of the Apennines (Abruzzo, central Italy), is approximately composed of about 80,000 specimens of vascular plants; 66,352 of them are mounted with data labels and entered in a database. The specimens from the Abruzzo administrative region (central Italy) correspond to more than half of the collection (57.8% of the specimens), while immediately afterwards, other neighboring provinces of central Italy follow. Outside of Italy, the most represented areas are Morocco and southern European countries. Most of the specimens were collected between 2001 and 2020; nevertheless, the herbarium also contains two historical collections from the end of the nineteenth century to the beginning of the twentieth century. The herbarium houses 146 types.
]]>Diversity doi: 10.3390/d16020095
Authors: Carlos Barceló Ignacio Ruiz-Arrondo
Mosquitoes (Fam. Culicidae), sand flies (Subfam. Phlebotominae), biting midges(Fam. Ceratopogonidae), black flies (Fam. Simuliidae) and stable flies (Fam. Muscidae) are groups of insects capable to transmit pathogens of public health and veterinary importance [...]
]]>Diversity doi: 10.3390/d16020096
Authors: Abdulwakeel Ayokun-nun Ajao Nicholas John Sadgrove
To make the distinction against pharmaceuticals, natural product medicines are more accurately denoted as nutritional therapies. In the context of topical therapies targeting dermatological conditions, nutritional therapy may explain the mechanism of ethnocosmetic plants used in hair treatment and care. Inspired by emerging theories of a connection between dysregulated glucose metabolism and hair loss, the current review of the literature focused on African plants used to target hair conditions in general, such as alopecia or scalp dermis infections, with a cross-examination of the potential of the species to alleviate issues with glucose metabolism. We distinguish between topical nutrition and sterilization (i.e., dandruff and lice). Sixty-eight plants were identified as an African treatment for alopecia, dandruff, lice, and tinea. Fifty-eight of the species have potential as antidiabetic treatments when taken orally. The family Lamiaceae was the most represented (six spp.), followed by Fabaceae and Asteraceae (five spp. each). Most species are herbs, and the most used plant part is the leaf. Thirty of the sixty species have research associated with hair growth and general hair care, with studies focused on 5α-reductase inhibition, biomarkers such as vascular endothelial growth factor, and the rate of telogen to anagen phase transition. While studies tend to conceptualize the mechanisms of these medicinal species similarly to pharmaceuticals, the current review argues that a nutritional interpretation is more appropriate, where a general improvement to local glucose metabolism may play a role.
]]>Diversity doi: 10.3390/d16020097
Authors: Enno Mager Ronja Brockhage Meike Piepenbring Francisca Segers Nourou Soulemane Yorou Ingo Ebersberger Ralph Daniel Mangelsdorff
In the present study, the mycobiomes of two soils with different ecological conditions located in Benin (West Africa) were investigated by environmental sequencing (Illumina MiSeq) of the ITS2-region of ribosomal DNA to gain information about the influence of pedological stratification on fungal diversity. For each soil depth and horizon, fungal diversity and community composition were analyzed as well as the potential impact of site characteristics, like vegetation, on these traits. The retrieved sequences revealed in all their replicates high similarities between fungal communities of samples from the same site and soil horizon, but differed within one site in their horizons. It was possible to assign a saprotrophic, symbiotrophic, or parasitic lifestyle to 24% of the recorded fungal mOTUs. Plant parasites were found in all samples in similar proportions. The presence of ectomycorrhizal fungi in one site could be linked to the presence of ectomycorrhizal trees. Overall, it was observed that fungal diversity decreased with increasing depth if only one horizon was present, whereas a deeper horizon present at one site contained communities with a distinct composition regarding the taxonomical affiliations and lifestyles of the fungi found compared to the upper layer. Hence, soil horizonation seems to drive differences in the composition of fungal communities, and should be regarded with more attention when analyzing soil mycobiomes.
]]>Diversity doi: 10.3390/d16020094
Authors: Spartak N. Litvinchuk Dmitriy V. Skorinov Alexander Yu. Ivanov Oleg A. Ermakov
Studying the distribution of morphologically cryptic animal species is always a very difficult task. Because most marsh frog species (the Pelophylax ridibundus complex) are cryptic, we used molecular markers to identify them. Three marsh frog species (P. ridibundus, P. kurtmuelleri and P. cf. bedriagae) inhabit the northern part of Western Palearctic. We created a database of localities and built models of their modern distribution. These models showed that the most suitable habitats are on the north of the Mediterranean region for P. cf. bedriagae, temperate Europe for P. ridibundus, and the Balkan coastal areas for P. kurtmuelleri. The projection of the modern ecological niches under the late-Quaternary climatic conditions showed that the range of P. kurtmuelleri remained largely unchanged during the period, whereas the ranges of P. cf. bedriagae and especially P. ridibundus changed greatly over time. During the Last Glacial Maximum, the presumed range of P. cf. bedriagae covered a relatively large area in the north of the Mediterranean region and the south of European Russia. Glacial refugia of P. ridibundus were apparently located in the northern Balkans, the northern coast of the Black and Azov seas, and possibly in Western Europe. The northward long-distance post-glacial dispersal of P. ridibundus occurred from refugia in the northeastern Balkans and the Black-Azov seas region. Since the Late Pleistocene, suitable habitats for P. cf. bedriagae in southern Russia began to decline, but local habitats for P. ridibundus become more suitable. Therefore, a mosaic of populations consisting of these both species and their hybrids has now been found here.
]]>Diversity doi: 10.3390/d16020093
Authors: Isabel Muñoz José Enrique García-Raso Pere Abelló Jose A. Cuesta
The updated checklist of the marine crabs of Guinea-Bissau presented in this work is the result of consolidating decades of research, ongoing systematic revisions of the regional carcinofauna, and the inclusion of new records. DNA markers and morphological analyses for accurate identifications are integrated. Sixty-one species are mentioned in this list after reviewing specimens from scientific collections and literature. Of these 61 species listed, the presence of 51 species in Guinea-Bissau is confirmed, and 21 are reported for the first time in the area. A total of 98 sequences were obtained from 41 species (51 of 16S for 38 species and 47 of COI for 35 species), and 48 sequences (24 of 16S and 24 of COI) were the first ones obtained for 29 species. The maximum or minimum bathymetric range is expanded by 16 species, and for other six species, a color description is provided for the first time. Merocryptus obsoletus is synonymized as Merocryptus boletifer. The present study will be a useful baseline for gathering further ecological information about globally important marine taxa, not only in Guinea-Bissau but about African brachyurans in general.
]]>Diversity doi: 10.3390/d16020092
Authors: Elizabeth C. Ashton Donald J. Macintosh
Mangroves rehabilitated after deforestation by commercial exploitation must be monitored to confirm that key ecosystem functions are being restored. Brachyuran crabs are conspicuous mangrove macrofauna and were selected as potential indicators of ecosystem recovery. A deforested former mangrove charcoal concession area in Ranong was rehabilitated by planting Rhizophora (1994), Bruguiera and Ceriops (1995) seedlings in single-species blocks. A second area, deforested and heavily degraded by tin mining, was rehabilitated with R. mucronata in 1985. Crabs at these sites were compared with those in a mixed-species conservation forest. Timed collections were made in 1999, 2008 and 2019 to compare crab diversity and relative abundance between sites and years. Thirty-three brachyuran crab species were recorded. Fiddler crabs (Austruca triangularis, Tubuca rosea) and the signal crab, Metaplax elegans, were most abundant, followed by sesarmid crabs (15 species). Species composition differed significantly between sites but not between the four planted tree species blocks. We propose Metaplax elegans as an indicator of ecological development in low-lying/newly formed sediments; fiddler crabs as equivalent indicators in young mangrove plantations/open forest habitats; and a diverse sesarmid community to indicate ecological functioning in older plantations/dense forests.
]]>Diversity doi: 10.3390/d16020091
Authors: Jae-Sung Rhee Sang-Eun Nam Seung Jae Lee Hyun Park
The sea star Patiria pectinifera (Asteroidea; Asterinidae; homotypic synonym: Asterina pectinifera; Muller & Troschel, 1842) is widely distributed in the coastal regions of the Seas of East Asia and the northern Pacific Ocean. Here, a de novo genome sequence of P. pectinifera as a reference for fundamental and applied research was constructed by employing a combination of long-read Oxford Nanopore Technology (ONT) PromethION, short-read Illumina platforms, and 10 × Genomics. The draft genome of P. pectinifera, containing 13,848,344 and 156,878,348 contigs from ONT and Illumina platforms, respectively, was obtained. Assembly with CANU resulted in 2262 contigs with an N50 length of 367 kb. Finally, ARCS + LINKS assembly combined these contigs into 328 scaffolds, totaling 499 Mb with an N50 length of 2 Mbp. The estimated genome size by GenomeScope analysis was 461 Mb. BUSCO analysis indicated that 930 (97.5%) of the expected genes were found in the assembly, with 889 (93.2%) being single-copy and 41 (4.3%) duplicated after searching against the metazoan database. Annotation, utilizing sequences obtained from Illumina RNA-Seq and Pacific Biosciences Iso-Seq, led to the identification of 22,367 protein-coding genes. When examining the orthologous relationship of P. pectinifera against the scaffolds of the common sea star Patiria miniata, high contiguity was observed. Annotation of repeat elements highlighted an enrichment of 1,121,079 transposable elements, constituting 47% of the genome, suggesting their potential role in shaping the genome structure of P. pectinifera. This de novo genome assembly is expected to be a valuable resource for future studies, providing insight into the developmental, environmental, and ecological aspects of P. pectinifera biology.
]]>Diversity doi: 10.3390/d16020087
Authors: René Monzalvo Diana Lizbeth Escorcia-Guerrero Mario Adolfo García-Montes Agnieszka Rewicz Tomasz Rewicz Norma L. Manríquez-Morán
Impatiens mexicana is a native balsam restricted to the cloud forests of central and southwest Mexico, which is currently known to exist in four states (Zacatecas, Veracruz, Puebla, and Oaxaca), and is probably threatened by geographic restriction. Morphological and distributional information about this species is still scarce, with only a couple of investigations since its first description in 1910, which means the phylogenetic position of this species has yet to be placed. In order to contribute to knowledge of I. mexicana, morphological and molecular studies were carried out with material collected in the localities of Hidalgo, Veracruz, and Oaxaca, during expeditions from July to October 2021 and in 2022. The specimens selected were measured, photographed, and compared with morphological information from the six American balsams. At the same time, phylogenetic studies were carried out by using two regions of the cpDNA and one of the nrDNA. We report I. mexicana for the first time in Hidalgo state, and identify new registers in the Veracruz and Oaxaca localities, thus increasing the knowledge in its geographic distribution. We also redescribe the Mexican balsam by using new and complementary traits: we note that while the species is morphologically similar to I. capensis, it is distinguished by differences in flower color, the distribution of spot patterns on the upper petal, lower sepal, and lateral petals, and geographic information such as endemic geographic distribution in Mexico’s Tropical Montane Cloud Forest (TMCF). We also carried out phylogenetic analyses by using ITS and ITS + atpb-rbcL, which showed the Mexican balsam was independent from its Asian-American congeners. Interestingly, our genetic distance analyses reveal differences of 0.01–0.16% between I. mexicana and the other North American congeners that use ITS, atpb-rbcL and trnL-F, both independently and as concatenated genes: this low divergence most likely occurred because of the recent diversification of the group. However, both future redescriptions and phylogenetic studies in American species are imperative, as this will enable better discrimination.
]]>Diversity doi: 10.3390/d16020090
Authors: Adriano Posse Senhorelo Elias Fernandes de Sousa Alexandre Rosa dos Santos Jéferson Luiz Ferrari João Batista Esteves Peluzio Rita de Cássia Freire Carvalho Kaíse Barbosa de Souza Taís Rizzo Moreira
Utilizing path analysis, we examined the interconnectedness among six meteorological variables. Among these, three pertain to energy conditions—air temperature, net solar radiation, and reference evapotranspiration (ET0)—while the others are associated with hydrological conditions: precipitation, relative humidity, and water deficiency. These variables were assessed across five distinct temporal delay levels to understand their influences on the normalized difference vegetation Index (NDVI) and enhanced vegetation index (EVI) within grassland areas situated in the state of Espírito Santo, southeastern Brazil. The images underwent processing using analytical algorithms and a geographic information system (GIS). The direct and indirect impacts of these variables on the NDVI and EVI exhibited remarkable similarity across varying temporal delays and geographic regions. Meteorological variables explained over 50% of the observed variation in both indices, occasionally even reaching levels of 70%. Temperature and relative humidity primarily exerted direct effects on the indices. Conversely, precipitation exhibited indirect effects on the indices, often in conjunction with other hydrological variables. ET0 demonstrated a direct effect on the vegetation indices, particularly after a delay of 32 days. Solar radiation and water deficiency displayed direct effects up to the 32-day mark, implying that vegetation responds more promptly to these variables. The proposed methodology enabled a consistent and stable assessment of the direct and indirect effects of meteorological variables on vegetation indices.
]]>Diversity doi: 10.3390/d16020089
Authors: Vazrick Nazari Sergio Montagud Alario Loukia Spilani Vlad Dincă Alireza Naderi Wolfgang ten Hagen Roger Vila
We investigated the evolutionary relationships between the taxa in the butterfly genus Iolana Bethune-Baker, 1914 and others in the subtribe Scolitantidina using information from nine DNA markers (COI-COII, ND1, ITS2, 28S, CAD, EF-1α, wg, and H3). We show that the genus Iolana originated about 10 mya in Central Asia and gradually expanded to the west to reach Europe about 5 mya. We then compared our inferred phylogeny with that of the Iolana larval host plants in the genus Colutea, reconstructed using three DNA markers (ITS, matK, and rpl32). Although the host plant phylogeny was weakly resolved, the close spatiotemporal correlation between Iolana butterflies and their larval hosts suggests that they may have co-evolved. Based on the molecular results and the morphology of male and female genitalia, we confirm nine species in the genus Iolana, which are distributed in allopatry from Europe and North Africa to Central Asia. We synonymize I. andreasi andreasi Sheljuzhko, 1919 (=I. andreasi khayyami Bernardi, 1964 syn. nov.) and I. iolas wullschlegeli Oberthür, 1914 (=I. iolas protogenes Fruhstorfer, 1917 syn. nov.).
]]>Diversity doi: 10.3390/d16020088
Authors: John Woodhouse Sergio Pérez-Ortega Claude Roux Michel Bertrand Steven D. Leavitt
Recent work has suggested exceptional species-level diversity in the lichen-forming Lecanora polytropa complex (Lecanoraceae, Ascomycota). However, biogeographic patterns and the spatial structuring of this diversity remains poorly known. To investigate diversity across multiple spatial scales, we sampled members of this species complex from two distinct regions—the Pacific Coast Ranges in southern Alaska, USA, and montane habitats in Spain. We also included sequence data from several species within this complex that were recently described from populations in France. Using the standard DNA barcoding marker and a sequence-based species delimitation approach (ASAP), we inferred a total of 123 candidate species (SHs) within the Lecanora polytropa complex, 32 of which were sampled for the first time here. Of 123 SHs, 21 had documented intercontinental distributions, while the vast majority were found at much smaller spatial scales. From our samples collected from Alaska, USA, and Spain, representing 36 SHs, we found high genetic diversity occurring within each sampled site, but limited overlap among all sites. Mountain ranges in both regions had high proportions of endemic lineages, with the highest diversity and endemism occurring in mountain ranges in Spain. Our sequence data generally support the recent taxonomic proposals, and an integrative taxonomy may help partly resolve the taxonomic conundrums within this hyper-diverse lineage.
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