Sign in to use this feature.

Years

Between: -

Subjects

remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline

Journals

remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline

Article Types

Countries / Regions

remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline

Search Results (11,206)

Search Parameters:
Keywords = metabolomics

Order results
Result details
Results per page
Select all
Export citation of selected articles as:
17 pages, 5059 KiB  
Article
Synergistic Regulation at Physiological, Transcriptional, and Metabolic Levels in Dendrobium huoshanense Plants Under Combined Drought and High-Temperature Stress
by Xingen Zhang, Guohui Li, Peipei Wei, Binbin Du, Shifan Liu and Jun Dai
Genes 2025, 16(3), 287; https://doi.org/10.3390/genes16030287 (registering DOI) - 27 Feb 2025
Abstract
Background: With global warming and climate change, the occurrence of abiotic stresses has become increasingly prevalent. Drought often occurs with high temperatures, especially in arid and semi-arid regions. However, the molecular mechanisms of plants responding to combined drought and high-temperature stress remains unclear. [...] Read more.
Background: With global warming and climate change, the occurrence of abiotic stresses has become increasingly prevalent. Drought often occurs with high temperatures, especially in arid and semi-arid regions. However, the molecular mechanisms of plants responding to combined drought and high-temperature stress remains unclear. Results: Through integrative physiological, transcriptomic, and metabolomic analyses, we systematically investigated the adaptive mechanisms of Dendrobium huoshanense under combined drought and high-temperature stress. Our findings revealed that combined drought and high-temperature stress led to significant reductions in photosynthetic efficiency and increased oxidative damage in Dendrobium huoshanense, with high-temperature stress being the primary contributor to these adverse effects. The joint analysis shows that three core pathways—signal transduction, lipid metabolism, and secondary metabolite biosynthesis—were identified as critical for antioxidant defense and stress adaptation. Conclusions: These findings not only deepen our understanding of plant responses to combined drought and high-temperature stress but also provide new directions for future research on the cultivation and resistance improvement of Dendrobium huoshanense. Full article
(This article belongs to the Section Plant Genetics and Genomics)
Show Figures

Figure 1

19 pages, 5125 KiB  
Article
Association Between Gall Structural and Metabolic Complexity: Evidence from Pistacia palaestina
by Daniela Batovska, Mirena Chakarova, Monica Dines, Ivayla Dincheva, Ilian Badjakov and Moshe Inbar
Plants 2025, 14(5), 721; https://doi.org/10.3390/plants14050721 (registering DOI) - 26 Feb 2025
Abstract
Pistacia palaestina hosts several Fordini gall-forming aphid species, which manipulate its anatomy and metabolism, creating galls that provide nutrients and protection. This study compared the extended metabolic profiles of P. palaestina leaves and galls induced by Baizongia pistaciae, Paracletus cimiciformis, and [...] Read more.
Pistacia palaestina hosts several Fordini gall-forming aphid species, which manipulate its anatomy and metabolism, creating galls that provide nutrients and protection. This study compared the extended metabolic profiles of P. palaestina leaves and galls induced by Baizongia pistaciae, Paracletus cimiciformis, and Geoica spp. GC–MS analysis of ethyl acetate (EtOAc) and methanol (MeOH) extracts revealed a high abundance of shikimic acid and quinic acid isomers, along with diverse hydrocarbons, lipids, terpenoids, phenolics, and carbohydrates, each showing distinct distributions across gall types. Paracletus cimiciformis galls closely resembled intact leaves, exhibiting limited metabolic disruption. In contrast, the larger, more complex galls of Baizongia and Geoica underwent profound metabolic modifications. These aphids manipulate host metabolism, leading to triterpenoid and phenolics accumulation, which likely fortifies gall structure and enhances chemical defense. The considerable variation among individual trees suggests that specific host plant templates significantly influence the metabolic profile of the galls. Full article
(This article belongs to the Section Plant Physiology and Metabolism)
Show Figures

Figure 1

26 pages, 687 KiB  
Review
An Update of Salivary Biomarkers for the Diagnosis of Alzheimer’s Disease
by Haiying Guo, Ruihuan Yang, Weigao Cheng, Qiwen Li and Minquan Du
Int. J. Mol. Sci. 2025, 26(5), 2059; https://doi.org/10.3390/ijms26052059 (registering DOI) - 26 Feb 2025
Viewed by 11
Abstract
Alzheimer’s disease (AD) is characterized by progressive cognition and behavior impairments. Diagnosing AD early is important for clinicians to slow down AD progression and preserve brain function. Biomarkers such as tau protein and amyloid-β peptide (Aβ) are used to aid diagnosis as clinical [...] Read more.
Alzheimer’s disease (AD) is characterized by progressive cognition and behavior impairments. Diagnosing AD early is important for clinicians to slow down AD progression and preserve brain function. Biomarkers such as tau protein and amyloid-β peptide (Aβ) are used to aid diagnosis as clinical diagnosis often lags. Additionally, biomarkers can be used to monitor AD status and evaluate AD treatment. Clinicians detect these AD biomarkers in the brain using positron emission tomography/computed tomography or in the cerebrospinal fluid using a lumbar puncture. However, these methods are expensive and invasive. In contrast, saliva collection is simple, inexpensive, non-invasive, stress-free, and repeatable. Moreover, damage to the brain parenchyma can impact the oral cavity and some pathogenic molecules could travel back and forth from the brain to the mouth. This has prompted researchers to explore biomarkers in the saliva. Therefore, this study provides an overview of the main finding of salivary biomarkers for AD diagnosis. Based on these available studies, Aβ, tau, cholinesterase enzyme activity, lactoferrin, melatonin, cortisol, proteomics, metabolomics, exosomes, and the microbiome were changed in AD patients’ saliva when compared to controls. However, well-designed studies are essential to confirm the reliability and validity of these biomarkers in diagnosing and monitoring AD. Full article
17 pages, 3922 KiB  
Article
Effect of Dietary Addition of Lentinus edodes on Rumen Flora, Lactation, and Health of Dairy Goats
by Huijun Shen, Mengyu Wang, Yong Ning, Yiqi Zhao, Baiji Danzeng, Kaixin Li, Huaiping Shi and Weijuan Li
Animals 2025, 15(5), 676; https://doi.org/10.3390/ani15050676 - 26 Feb 2025
Viewed by 68
Abstract
Lentinus edodes (LE) is a nutrient-rich medicinal fungus with potential applications in animal nutrition; however, its effects on dairy goats remain underexplored. This study investigated the impact of dietary LE addition on rumen microbiota, metabolic profiles, serum immunity, and milk quality in lactating [...] Read more.
Lentinus edodes (LE) is a nutrient-rich medicinal fungus with potential applications in animal nutrition; however, its effects on dairy goats remain underexplored. This study investigated the impact of dietary LE addition on rumen microbiota, metabolic profiles, serum immunity, and milk quality in lactating dairy goats. Twenty Saanen goats were randomly assigned to a control group (CON, basal diet) or an LE group (basal diet + 25 g Lentinus edodes) for 56 days. Rumen fluid, serum, and milk samples were analyzed using 16S rDNA sequencing, metabolomics, and biochemical assays. The results showed that the addition of LE altered the microbial composition, decreasing the abundance of fibrobacterial flora and Treponema (p < 0.05) while increasing VadinHA49. Metabolomic analysis revealed elevated fumaric acid, lysophospholipids (LysoPE, LysoPG), and D-quinic acid in the rumen (p < 0.05). Serum immunoglobulin A (IgA), immunoglobulin G (IgG), total antioxidant capacity (T-AOC), superoxide dismutase (SOD), catalase (CAT), and tumor necrosis factor-α (TNF-α) levels were significantly enhanced (p < 0.05). The milk somatic cell count (SCC) was reduced by 52.8% (p = 0.005) at day 56, and protein, fat, and total solids increased significantly (p < 0.05). Enrichment of functional metabolites such as D-arabitol and D-tryptophan in milk further highlighted LE’s role in improving product value. These findings demonstrate that LE optimizes rumen flora, enhances antioxidant and immune functions, and improves milk quality, supporting its use as a functional feed additive for dairy goats. Full article
(This article belongs to the Section Small Ruminants)
Show Figures

Figure 1

19 pages, 4117 KiB  
Article
Metabolomic Analysis of Flavour Development in Mung Bean Foods: Impact of Thermal Processing and Storage on Precursor and Volatile Compounds
by Jingru Sun, Yanlong Li, Xiaoyu Cheng, Hongli Zhang, Jinchi Yu, Lixiang Zhang, Ying Qiu, Jingjing Diao and Changyuan Wang
Foods 2025, 14(5), 797; https://doi.org/10.3390/foods14050797 - 26 Feb 2025
Viewed by 55
Abstract
Consumers prefer mung beans for their low allergenicity and nutritional benefits. However, flavour development in mung bean foods has been problematic, with beany flavour being a limiting factor. Hot processing is crucial in forming mung bean flavours, and storage-induced changes in flavour precursors [...] Read more.
Consumers prefer mung beans for their low allergenicity and nutritional benefits. However, flavour development in mung bean foods has been problematic, with beany flavour being a limiting factor. Hot processing is crucial in forming mung bean flavours, and storage-induced changes in flavour precursors directly impact the taste post-processing. This study used metabolomics to analyse the effects of hot processing (baking and cooking) on mung bean flavour and differences after storage. A total of 131 flavour precursors and 45 volatile substances were identified across six sample groups. The results showed that baking and cooking upregulated 22 and 18 volatile substances (ketones, aldehydes, esters, pyridine, pyrazines, etc.), respectively. The Maillard reaction during baking notably increased compounds like 2-hydroxypyridine, 2-methoxy-3-isobutyl pyrazine, 1,2-hexanedione, and 2,3-butanedione. Both methods inhibited linoleic acid oxidation, significantly reducing hexanal content, a key “bean” odour substance. However, storage accelerated linoleic acid conversion to C13 peroxides, increasing hexanal content and bean odour. This process decreased precursor substances like glucose-1-phosphate and caused the accumulation of pyruvic acid intermediates in pentose phosphate and pyruvate metabolism/amino acid metabolism pathways, leading to reduced mung bean taste richness. Full article
(This article belongs to the Section Food Analytical Methods)
Show Figures

Figure 1

13 pages, 1015 KiB  
Article
GDF15 Circulating Levels Are Associated with Metabolic-Associated Liver Injury and Atherosclerotic Cardiovascular Disease
by Josefa Girona, Montse Guardiola, Emma Barroso, María García-Altares, Daiana Ibarretxe, Núria Plana, Josep Ribalta, Núria Amigó, Xavier Correig, Manuel Vázquez-Carrera, Lluís Masana and Ricardo Rodríguez-Calvo
Int. J. Mol. Sci. 2025, 26(5), 2039; https://doi.org/10.3390/ijms26052039 - 26 Feb 2025
Viewed by 71
Abstract
There is growing evidence linking growth differentiation factor 15 (GDF15) to both metabolic dysfunction-associated steatotic liver disease (MASLD) and cardiovascular (CV) risk. Nevertheless, the potential relationship between circulating levels of GDF15 and key features of MASLD being predisposed to atherosclerotic CV disease is [...] Read more.
There is growing evidence linking growth differentiation factor 15 (GDF15) to both metabolic dysfunction-associated steatotic liver disease (MASLD) and cardiovascular (CV) risk. Nevertheless, the potential relationship between circulating levels of GDF15 and key features of MASLD being predisposed to atherosclerotic CV disease is not fully unveiled. The aim of this study was to deepen into the role of circulating GDF15 levels on metabolic-associated liver injury and atherosclerotic CV disease. We determined the serum GDF15 levels in 156 participants of a metabolic patient-based cohort, and cross-sectionally explored its associations with liver injury and an advanced atherosclerotic lipoprotein profile assessed by nuclear magnetic resonance (1H-NMR). Additionally, we prospectively evaluated the association between GDF15 levels at baseline and incident atherosclerotic CV disease after a 10-year follow-up. GDF15 was related to liver injury and inflammatory hallmarks, and it increased the likelihood for liver steatosis independently of confounding factors. Likewise, GDF15 was positively associated with an atherogenic profile, particularly with the number of very-low-density lipoproteins (VLDL) particles and its cholesterol and triglyceride content, and with an indicator of subclinical atherosclerosis (i.e., carotid intima–media thickness (cIMT)). The baseline serum GDF15 levels were higher in the patients with atherosclerotic CV disease (10.6%) after a 10-year follow-up than in the individuals without CV disease. Altogether, this study provides new insights into the role of GDF15 in both MASLD and CV disease. Full article
(This article belongs to the Section Molecular Pathology, Diagnostics, and Therapeutics)
Show Figures

Figure 1

21 pages, 10937 KiB  
Article
Complex Probiotics Ameliorate Fecal Microbiota Transplantation-Induced IBS in Mice via Gut Microbiota and Metabolite Modulation
by Yuan Gao, Qinggele Borjihan, Weiqin Zhang, Lu Li, Dandan Wang, Lu Bai, Shiming Zhu and Yongfu Chen
Nutrients 2025, 17(5), 801; https://doi.org/10.3390/nu17050801 - 26 Feb 2025
Viewed by 65
Abstract
Background/Objectives: Irritable bowel syndrome (IBS) is a highly prevalent functional gastrointestinal disorder. Emerging evidence implicates gut microbiota dysbiosis in IBS pathogenesis, and probiotic interventions targeting microbial modulation hold therapeutic promise. Methods: this study used fecal microbiota transplantation to establish a mouse model of [...] Read more.
Background/Objectives: Irritable bowel syndrome (IBS) is a highly prevalent functional gastrointestinal disorder. Emerging evidence implicates gut microbiota dysbiosis in IBS pathogenesis, and probiotic interventions targeting microbial modulation hold therapeutic promise. Methods: this study used fecal microbiota transplantation to establish a mouse model of IBS before evaluating the effects of the complex probiotic by using metagenomics and targeted metabolomics to explore the potential mechanism. Results: After 14 days, the probiotic relieved constipation, reduced inflammation and intestinal permeability, lowered 5-HT levels and increased serotonin transporter (SERT) expression in tissues. Metagenomic analysis showed a reduced inflammation-related species abundance. It also decreased fecal butyric acid, acetic acid and tryptophan levels in IBS mice. Conclusions: The probiotic complex effectively alleviated IBS symptoms in mice by modulating gut microbiota and fecal metabolites, providing insights for future IBS research and treatment. Full article
(This article belongs to the Section Prebiotics and Probiotics)
Show Figures

Figure 1

27 pages, 1311 KiB  
Review
Intestinal Microbiota Dysbiosis Role and Bacterial Translocation as a Factor for Septic Risk
by Ioannis Alexandros Charitos, Salvatore Scacco, Antonella Cotoia, Francesca Castellaneta, Giorgio Castellana, Federico Pasqualotto, Maria Venneri, Angela Ferrulli, Maria Aliani, Luigi Santacroce and Mauro Carone
Int. J. Mol. Sci. 2025, 26(5), 2028; https://doi.org/10.3390/ijms26052028 - 26 Feb 2025
Viewed by 102
Abstract
The human immune system is closely linked to microbiota such as a complex symbiotic relationship during the coevolution of vertebrates and microorganisms. The transfer of microorganisms from the mother’s microbiota to the newborn begins before birth during gestation and is considered the initial [...] Read more.
The human immune system is closely linked to microbiota such as a complex symbiotic relationship during the coevolution of vertebrates and microorganisms. The transfer of microorganisms from the mother’s microbiota to the newborn begins before birth during gestation and is considered the initial phase of the intestinal microbiota (IM). The gut is an important site where microorganisms can establish colonies. The IM contains polymicrobial communities, which show complex interactions with diet and host immunity. The tendency towards dysbiosis of the intestinal microbiota is influenced by local but also extra-intestinal factors such as inflammatory processes, infections, or a septic state that can aggravate it. Pathogens could trigger an immune response, such as proinflammatory responses. In addition, changes in the host immune system also influence the intestinal community and structure with additional translocation of pathogenic and non-pathogenic bacteria. Finally, local intestinal inflammation has been found to be an important factor in the growth of pathogenic microorganisms, particularly in its role in sepsis. The aim of this article is to be able to detect the current knowledge of the mechanisms that can lead to dysbiosis of the intestinal microbiota and that can cause bacterial translocation with a risk of infection or septic state and vice versa. Full article
(This article belongs to the Special Issue Molecular Research on the Gut Microbiota in Diseases)
Show Figures

Graphical abstract

19 pages, 15824 KiB  
Article
Effects of Dietary Pretreatment with All-trans Lycopene on Lipopolysaccharide-Induced Jejunal Inflammation: A Multi-Pathway Phenomenon
by Daolin Mou, Dajiang Ding, Junning Pu, Pan Zhou, Enming Cao, Xueyan Zhang, Junrong Lan, Lu Ye and Wanxue Wen
Foods 2025, 14(5), 794; https://doi.org/10.3390/foods14050794 - 26 Feb 2025
Viewed by 149
Abstract
This study was conducted to investigate the effects and mechanisms of all-trans lycopene on intestinal health by establishing lipopolysaccharide-induced (LPS-induced) jejunal inflammation model. Dietary lycopene supplementation enhanced serum and jejunum antioxidant capacity. Lycopene significantly reduced LPS-induced upregulation of toll-like receptor-4 (TLR-4) and [...] Read more.
This study was conducted to investigate the effects and mechanisms of all-trans lycopene on intestinal health by establishing lipopolysaccharide-induced (LPS-induced) jejunal inflammation model. Dietary lycopene supplementation enhanced serum and jejunum antioxidant capacity. Lycopene significantly reduced LPS-induced upregulation of toll-like receptor-4 (TLR-4) and nuclear factor kappa-B (NF-κB), suggesting that lycopene reduced the activation of TLR-4/NF-κB signaling pathway induced by LPS challenge, and further protected mice from LPS induced jejunal inflammation. Furthermore, lycopene increased jejunal zonula occludens-1 (ZO-1) protein expression that was reduced by LPS challenge, and increased abundance of Rikenella, Lachnospiraceae_NK4A136_group and Mucispirillum potentially associated with reducing gut inflammation. Overall, these results showed that pretreatment with lycopene can improve jejunal inflammation and ensure intestinal health in mice by improving antioxidant capacity, intestinal barrier function, microorganisms potentially associated with anti-inflammatory effects and reducing the activation of TLR-4/NF-κB signaling pathway by LPS. We provided a new insight into lycopene prevented LPS-induced jejunal inflammation by corresponding alterations in serum metabolites and gut microbiota, improving antioxidant capacity and regulating the TLR-4/NF-κB signaling pathway in mice. Full article
(This article belongs to the Section Food Nutrition)
Show Figures

Figure 1

23 pages, 10836 KiB  
Article
Evaluate the Effects of Different Processing Methods on Red Dragon Fruit (Hylocereus species) Juice from the Perspective of Physicochemical Properties and Metabolic Profiles
by Shuai Chen, Yansong Li, Jiamu Kang, Congyan Su, Yuyi Liu, Yanfei Cheng, Zexin Wang, Shuxian Li and Congfa Li
Foods 2025, 14(5), 793; https://doi.org/10.3390/foods14050793 - 26 Feb 2025
Viewed by 144
Abstract
Red dragon fruit juice (RDFJ) is a common fruit processing product on the market, and different processing methods can affect its quality. This study selected traditional thermal processing methods such as pasteurization and novel non-thermal processing methods like ultrasonication and cold plasma to [...] Read more.
Red dragon fruit juice (RDFJ) is a common fruit processing product on the market, and different processing methods can affect its quality. This study selected traditional thermal processing methods such as pasteurization and novel non-thermal processing methods like ultrasonication and cold plasma to treat red dragon fruit juice. The effects of different processing methods on the quality of red dragon fruit juice were comprehensively evaluated through physicochemical properties, in vitro activity, metabolomics and flavoromics. The results indicate that the cloud stability of cold plasma (CP) treatment increased by 16.64%, the total polyphenol content increased by 13.76%, and its antioxidant capacity was higher than that of other treatments. Cold plasma significantly increased the content of L-tyrosine and affected the amino acid metabolic pathways of RDFJ, which can contribute to the total phenolic content of RDFJ and antioxidant activity. CP treatment effectively preserved the aroma components of RDFJ and decreased the content of harmful furan volatile compounds. The results suggest that cold plasma is a promising innovative non-thermal processing technique in RDFJ. Full article
Show Figures

Figure 1

24 pages, 1445 KiB  
Article
Associations Between Dietary Patterns and the Occurrence of Hospitalization and Gastrointestinal Disorders—A Retrospective Study of COVID-19 Patients
by Viktoria Hawryłkowicz, Beata Stasiewicz, Sebastian Korus, Wiktoria Krauze, Kamila Rachubińska, Elżbieta Grochans and Ewa Stachowska
Nutrients 2025, 17(5), 800; https://doi.org/10.3390/nu17050800 - 26 Feb 2025
Viewed by 170
Abstract
During the COVID-19 pandemic, dietary habits in the population changed and sometimes deviated from healthy eating patterns, such as the Mediterranean diet. Based on reports on the quality of the diet of respondents to studies conducted at the beginning of the pandemic, it [...] Read more.
During the COVID-19 pandemic, dietary habits in the population changed and sometimes deviated from healthy eating patterns, such as the Mediterranean diet. Based on reports on the quality of the diet of respondents to studies conducted at the beginning of the pandemic, it could be concluded that these new dietary habits are unfavorable for a good prognosis and the course of any disease and its severity of symptoms. This study decided to confront these assumptions with the results of people who had COVID-19. Background/Objectives: This study aimed to assess the associations between dietary patterns and the occurrence of hospitalization and gastrointestinal disorders among patients diagnosed with COVID-19. Methods: This study included 550 respondents who completed a survey up to 8 months after being diagnosed with COVID-19. The survey included 62 items from the FFQ-6®, GSRS, PAC-SYM and FACT-G7 standardized questionnaires. Results: Two dietary patterns (DPs) were identified: ‘Processed high fat/sugar/salt/meat/dairy/potatoes’ and ‘Semi-vegetarian’. Higher adherence to the ‘Processed’ DP was associated with higher odds of hospitalization due to COVID-19, a more severe course of the disease, and the highest intensity of gastrointestinal symptoms. Higher adherence to the ‘Semi-vegetarian’ DP was associated with lower odds of hospitalization due to COVID-19, a less severe course of the disease, and the lowest intensity of gastrointestinal symptoms. Conclusions: This study showed a strong harmful effect of high adherence to a processed dietary pattern on an increased incidence of hospitalization and gastrointestinal disorders among northwestern Polish adults during the COVID-19 pandemic, emphasizing the importance of a healthy diet. Full article
(This article belongs to the Special Issue Diet, Gut Microbiota, and Gastrointestinal Disease)
Show Figures

Figure 1

13 pages, 2738 KiB  
Article
Metabolomics Study Revealed the Effects of CaO-Treated Maize Straw on the Rumen Metabolites
by Hui Wang, Mingjun Shi, Zhanxia Ma, Xuewei Zhang, Huiyong Shan, Xiaofeng Xu, Suyu Quan, Junqin Zhang and Yujia Tian
Animals 2025, 15(5), 674; https://doi.org/10.3390/ani15050674 - 26 Feb 2025
Viewed by 42
Abstract
As an important limiting factor, lignin hinders the utilization rate of maize straw in ruminants. CaO treatment increases the feed digestibility of maize straw by disrupting the ester bonds between hemicellulose, cellulose, and lignin in maize straw. Our previous research found that CaO [...] Read more.
As an important limiting factor, lignin hinders the utilization rate of maize straw in ruminants. CaO treatment increases the feed digestibility of maize straw by disrupting the ester bonds between hemicellulose, cellulose, and lignin in maize straw. Our previous research found that CaO treatment of corn straw may increase its feed digestibility by altering the rumen microbes’ abundance. This study further investigated the molecular mechanism of CaO treatment to enhance feed utilization and also examined its ongoing effects on rumen metabolites. Rumen fluid was collected to analyze microbial metabolites using liquid chromatography–mass spectrometry (LC–MS) non-targeted metabolomics. Maize straw (moisture content of 60%) treated with four levels of CaO (0%, 3%, 5%, and 7%) was used as the fermentation substrate for a 6 h in vitro culture. Based on the effect of CaO-treated maize straw on the rumen microbial diversity, no significant differences were observed in microbial composition between the 0% and 3% treatment groups or between the 5% and 7% treatment groups. However, the microbial structure of the 0% and 3% treatment groups differed from that of the 5% and 7% groups. Therefore, the four levels were divided into a low-efficiency group (LE group: 0% and 3% levels) and a high-efficiency group (HE group: 5% and 7% levels) for principal component analysis (PCA) and partial least squares discriminant analysis (PLS-DA). Compared with the LE group, most of the ruminal metabolites that showed increased levels in the HE group were products of lignin degradation. Among these differential metabolites, Dihydro-3-coumaric acid had a significant positive correlation with Prevotella and fermentation indicators like acetate, propionate, and butyrate. KEGG analysis showed differential metabolites were primarily enriched in the amino acid metabolism, tryptophan metabolism, phenylalanine, tyrosine, and tryptophan biosynthesis, and cyanoamino acid metabolism. The higher CaO concentration in the HE group effectively disrupted most covalent bonds with lignin, significantly enhancing cellulose degradation and ultimately supporting improved rumen metabolism. Full article
(This article belongs to the Section Animal Physiology)
Show Figures

Figure 1

21 pages, 5553 KiB  
Article
Identification of Bioactive Metabolites of Capirona macrophylla by Metabolomic Analysis, Molecular Docking, and In Vitro Antiparasitic Assays
by Joseph Evaristo, Elise de Laia, Bruna Tavares, Esdras Mendonça, Larissa Grisostenes, Caroline Rodrigues, Welington do Nascimento, Carolina Garcia, Sheila Guterres, Fábio Nogueira, Fernando Zanchi and Geisa Evaristo
Metabolites 2025, 15(3), 157; https://doi.org/10.3390/metabo15030157 - 26 Feb 2025
Viewed by 136
Abstract
Capirona macrophylla is a Rubiaceae known as “mulateiro”. Ethnobotanical extracts have been used for skin treatment and in the management of leishmaniasis and malaria. Objectives: The metabolites in aqueous extracts from wood bark, leaves, and stems were identified, and their in silico docking [...] Read more.
Capirona macrophylla is a Rubiaceae known as “mulateiro”. Ethnobotanical extracts have been used for skin treatment and in the management of leishmaniasis and malaria. Objectives: The metabolites in aqueous extracts from wood bark, leaves, and stems were identified, and their in silico docking and in vitro cellular efficacy against Leishmania amazonensis and Plasmodium falciparum were evaluated. Methods: The extracts were analyzed by UHPLC/HRMSn using untargeted metabolomics approach with MSDial, MSFinder, and GNPS software for metabolite identification and spectra clustering. The most abundant metabolites underwent molecular docking using AutoDock via PyRx, targeting the dihydroorotate dehydrogenase from Leishmania and P. falciparum, and evaluated through molecular dynamics simulations using Gromacs. In vitro biological assays were conducted on 60 HPLC-fractions against these parasites. Results: Metabolomics analysis identified 5100 metabolites in ESI+ and 2839 in ESI− spectra among the “mulateiro” samples. GNPS clustering highlighted large clusters of quercetin and chlorogenic acid groups. The most abundant metabolites were isofraxidin, scopoletin, 5(S)-5-carboxystrictosidine, loliolide, quercetin, quinic acid, caffeoylquinic acid (and isomers), chlorogenic acid, neochlorogenic acid, tryptophan, N-acetyltryptophan, epicatechin, procyanidin, and kaempferol-3-O-robinoside-7-O-rhamnoside. Molecular docking pointed to 3,4-dicaffeoylquinic acid and kaempferol as promising inhibitors. The in vitro assays yielded four active HPLC-fractions against L. amazonensis with IC50 values ranging from 175.2 μg/mL to 194.8 μg/mL, and fraction G29 showed an IC50 of 119.8 μg/mL against P. falciparum. Conclusions: The ethnobotanical use of “mulateiro” wood bark tea as an antimalarial and antileishmanial agent was confirmed through in vitro assays. We speculate that these activities are attributed to linoleic acids and quinic acids. Full article
Show Figures

Figure 1

26 pages, 7575 KiB  
Article
Fermented Corn Straw Increases Cellulase Activity, Improves Rumen Fermentation, and Increases Nutrient Digestibility in Yichang White Goats
by Xuying Jia, Yaohao Dun, Min Zhang, Yuxia Mei, Yingjun Li and Yunxiang Liang
Fermentation 2025, 11(3), 111; https://doi.org/10.3390/fermentation11030111 - 25 Feb 2025
Viewed by 182
Abstract
Corn, as a raw material supplying energy, plays an important role in animal husbandry. But in recent years, problems related to insufficient energy supply from corn have attracted increasing attention. Therefore, it is highly important to develop new energy-supplying materials to replace corn [...] Read more.
Corn, as a raw material supplying energy, plays an important role in animal husbandry. But in recent years, problems related to insufficient energy supply from corn have attracted increasing attention. Therefore, it is highly important to develop new energy-supplying materials to replace corn in animal diets. To study the feasibility of replacing corn with fermented corn straw in ruminants, 16 Yichang white goats were divided into two groups: those kept on a grain-based diet with dry corn straw (DS) and those fed a grain-based diet with fermented corn straw (FS). Corn in the FS group was replaced with fermented corn straw at a ratio of 1.3:1. By increasing the surface area (p = 0.035) and width (p = 0.024) of the rumen epithelial papillae of Yichang white goats, the absolute enzyme activity of carboxymethyl cellulase and the relative enzyme activity of microcrystalline cellulase in the rumen contents increased with fermented corn straw, and the rumen digestibility of cellulose and the whole intestinal apparent digestibility of CP, CF, NDF, ADF, cellulose and hemicellulose increased. The timely removal of excess calcium through feces and urine prevented liver and kidney damage, improved the heart index and liver index, and sustained goat health. Due to an increase in the abundance of beneficial bacteria such as f-Lachnospiraceae and c_Bacilli in the rumen fluid and colon contents, the abundance of potentially harmful bacteria such as s_Turicibacter decreased. Through the rumen pentose phosphate pathway, carbon metabolism, the AMPK signaling pathway, pathways of neurodegeneration, multiple diseases pathways, vitamin b6 metabolism in the colon, the biosynthesis of nucleotide sugars, and the cysteine and methionine metabolism pathways, rumen fermentation and metabolism are regulated in the goat body, promoting animal health. In this study, we systematically evaluated the effects of replacing corn with fermented corn straw on the carcass index, organ index, calcium and phosphorus contents in tissues, serum biochemical parameters, nutrient digestibility, rumen epithelium and intestinal development, rumen fermentation, and microbial enzyme activity of the rumen contents of Yichang white goats. By combining these approaches with microbial 16S amplicon analysis of rumen fluid and colon contents, along with nontargeted metabolome analysis, we demonstrated the feasibility of substituting corn with fermented corn straw in ruminant feed, providing a new approach for the substitution of energy-supplying feed materials. Full article
(This article belongs to the Section Industrial Fermentation)
Show Figures

Figure 1

18 pages, 7425 KiB  
Article
Exploration of Conditions for the Scaled Application of Laparoscopic Ovum Pick-Up in Sheep and Comparison of Follicular Development Differences Among Breeds
by Dongxu Li, Xiangli Wu, Ying Chen, Yangsheng Wu, Gulimire Abudureyimu, Hongyang Liang, Xiuling Ma, Wei Zhang, Liqin Wang and Jiapeng Lin
Int. J. Mol. Sci. 2025, 26(5), 1989; https://doi.org/10.3390/ijms26051989 - 25 Feb 2025
Viewed by 76
Abstract
In small ruminants, laparotomy for ovarian exploration followed by oocyte collection has been progressively replaced by laparoscopic puncture of follicles, which has become an important method for obtaining oocytes in vivo. However, the superovulation protocols and collection frequency used for laparoscopic ovum pick-up [...] Read more.
In small ruminants, laparotomy for ovarian exploration followed by oocyte collection has been progressively replaced by laparoscopic puncture of follicles, which has become an important method for obtaining oocytes in vivo. However, the superovulation protocols and collection frequency used for laparoscopic ovum pick-up (LOPU) in sheep still require further investigation. This study explored the factors influencing LOPU efficiency in sheep, including Controlled Internal Drug Release (CIDR) for estrus synchronization, FSH source and dose, and recovery intervals. The optimal superovulation protocol (using the CIDR device, a total of 16 mg of long-acting recombinant ovine FSH (LR-FSH) administered in two doses, and a one-month interval between LOPU sessions) was subsequently identified. Ovarian follicles were collected via LOPU from Hu sheep and Altay sheep for transcriptomic and metabolomic sequencing to explore interbreed differences in follicular development. The results indicated that LOPU efficiency was significantly higher in the CIDR group (p < 0.05) and with a 30-day recovery interval (p < 0.05). No significant differences in LOPU efficiency were observed between FSH sources or hormone doses. Furthermore, Hu sheep exhibited significantly higher LOPU efficiency and more antral follicles than Altay sheep. Transcriptomic analysis of follicular contents and metabolomic profiling of follicular fluid revealed that differentially expressed genes and metabolites were primarily enriched in pathways related to steroidogenesis, amino acid metabolism, and fatty acid metabolism. This study provides an optimized treatment protocol to enhance LOPU efficiency and integrates multi-omics analyses to elucidate the molecular mechanisms underlying follicular development differences among various breeds. Full article
(This article belongs to the Special Issue Molecular Research on Embryo Developmental Potential)
Show Figures

Figure 1

Back to TopTop