Journal Description
Agronomy
Agronomy
is an international, peer-reviewed, open access journal on agronomy and agroecology published monthly online by MDPI. The Spanish Society of Plant Physiology (SEFV) is affiliated with Agronomy and their members receive discounts on the article processing charges.
- Open Access— free for readers, with article processing charges (APC) paid by authors or their institutions.
- High Visibility: indexed within Scopus, SCIE (Web of Science), PubAg, AGRIS, and other databases.
- Journal Rank: JCR - Q1 (Agronomy) / CiteScore - Q1 (Agronomy and Crop Science)
- Rapid Publication: manuscripts are peer-reviewed and a first decision is provided to authors approximately 15.8 days after submission; acceptance to publication is undertaken in 2.4 days (median values for papers published in this journal in the second half of 2023).
- Recognition of Reviewers: reviewers who provide timely, thorough peer-review reports receive vouchers entitling them to a discount on the APC of their next publication in any MDPI journal, in appreciation of the work done.
- Companion journals for Agronomy include: Seeds, Agrochemicals, Grasses and Crops.
Impact Factor:
3.7 (2022);
5-Year Impact Factor:
4.0 (2022)
Latest Articles
PGRFA Management of Outcrossing Plants Propagated by Seed: From On-Farm to Ex Situ Conservation and Some Italian Maize Case Studies
Agronomy 2024, 14(5), 1030; https://doi.org/10.3390/agronomy14051030 (registering DOI) - 12 May 2024
Abstract
In this review, the main issues related to the conservation and valorization of Plant Genetic Resources for Food and Agriculture (PGRFA) will be primarily addressed. The conservation of PGRFA concerning outcrossing plants poses a significant challenge. For this reason, this review will cover
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In this review, the main issues related to the conservation and valorization of Plant Genetic Resources for Food and Agriculture (PGRFA) will be primarily addressed. The conservation of PGRFA concerning outcrossing plants poses a significant challenge. For this reason, this review will cover the key challenges related to all stages, starting from in situ sampling, collection in the germplasm bank, and conservative reproductive methods. Integrated approaches involving the combined use of classical and molecular techniques will be described for the characterization of accessions. Within this framework, some successful Italian case studies focused on maize will be reported as well.
Full article
(This article belongs to the Section Crop Breeding and Genetics)
Open AccessArticle
Screening of Wheat Genotypes for Water Stress Tolerance Using Soil–Water Relationships and Multivariate Statistical Approaches
by
Mohamed H. Sheta, Mostafa M. A. Hasham, Kholoud Z. Ghanem, Hala M. Bayomy, Abdel-Nasser A. El-Sheshtawy, Rasha S. El-Serafy and Eman Naif
Agronomy 2024, 14(5), 1029; https://doi.org/10.3390/agronomy14051029 (registering DOI) - 12 May 2024
Abstract
Drought stress constricts crop production around the world. Employing high-yielding cultivars with drought tolerance might be the ideal professional approach to coping with its detrimental outcomes. As a result, the current study was performed to investigate the sensitivity and tolerance of nine wheat
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Drought stress constricts crop production around the world. Employing high-yielding cultivars with drought tolerance might be the ideal professional approach to coping with its detrimental outcomes. As a result, the current study was performed to investigate the sensitivity and tolerance of nine wheat genotypes to drought stress. In a randomized block design experiment, nine wheat genotypes were subjected to four water treatments: 100%, 85%, 70%, and 55% of the available water (AW). Four water regimes in two growing seasons were counted as eight environmental zones. The leaf’s water relations and photosynthetic pigment were estimated, as well as growth and yield parameters. Univariate and multivariate statistical approaches, including the new method of multi-trait genotype–ideotype distance (MGIDI), were used for evaluation. The analysis of variance revealed that genotype, environment, and their interactions had a highly significant effect on all traits. The same trend was shown by the additive main effects and multiplicative interaction (AMMI) analysis of variance for grain yield across the environments. The AMMI biplot study indicated that the G8 genotype is the most stable in terms of water stress. The G7 genotype can withstand droughts up to 55% of the available water, while the G8 and G3 genotypes can withstand droughts up to 70% of the available water. Based on all examined traits, this index was used to identify the stable genotypes G7, G8, and G3, which can therefore be suggested for cultivation during drought conditions. Furthermore, we found a positive correlation between the MGIDI, ANOVA, and tolerance index results, indicating that the same desirable genotypes of G7 and G8 were identified by these procedures as being highly tolerant and stable across a range of soil moisture conditions. Based on MGIDI analysis, we can recommend that the G7 genotype exhibits higher grain yield and yield-related traits with the best drought-tolerant indices.
Full article
(This article belongs to the Special Issue Advances in Data, Models, and Their Applications in Agriculture)
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Open AccessArticle
Analysis of the Effects of Population Structure and Environmental Factors on Rice Nitrogen Nutrition Index and Yield Based on Machine Learning
by
Yan Jia, Yu Zhao, Huimiao Ma, Weibin Gong, Detang Zou, Jin Wang, Aixin Liu, Can Zhang, Weiqiang Wang, Ping Xu, Qianru Yuan, Jing Wang, Ziming Wang and Hongwei Zhao
Agronomy 2024, 14(5), 1028; https://doi.org/10.3390/agronomy14051028 (registering DOI) - 12 May 2024
Abstract
With the development of rice varieties and mechanized planting technology, reliable and efficient nitrogen and planting density status diagnosis and recommendation methods have become critical to the success of precise nitrogen and planting density management in crops. In this study, we combined population
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With the development of rice varieties and mechanized planting technology, reliable and efficient nitrogen and planting density status diagnosis and recommendation methods have become critical to the success of precise nitrogen and planting density management in crops. In this study, we combined population structure, plant shape characteristics, environmental weather conditions, and management information data using a machine learning model to simulate the responses of the yield and nitrogen nutrition index and developed an ensemble learning model-based nitrogen and planting density recommendation strategy for different varieties of rice types. In the third stage, the NNI and yield prediction effect of the ensemble learning model was more significantly improved than that of the other two stages. The scenario analysis results show that the optimal yields and nitrogen nutrition indices were obtained with a density and nitrogen amount of 100.1 × 104 plant/ha and 161.05 kg·ha−1 for the large-spike type variety of rice, 75.08 × 104 plant/ha and 159.52 kg·ha−1 for the intermediate type variety of rice, and 75.08 × 104 plant/ha and 133.47 kg·ha−1 for the panicle number type variety of rice, respectively. These results provide a scientific basis for the nitrogen application and planting density for a high yield and nitrogen nutrition index of rice in northeast China.
Full article
(This article belongs to the Section Precision and Digital Agriculture)
Open AccessArticle
Impact of the Combination of Chemical and Organic Fertilization on the Growth and Yield of Pineapple under Two Shade Net Conditions
by
Jonathan Martínez-Conde, Rogelio Enrique Palacios-Torres, Ana Rosa Ramírez-Seañez, Adolfo Amador-Mendoza, Maribel Reyes-Osornio, José Antonio Yam-Tzec, José Orbelin Gutiérrez-Hernández and Hipólito Hernández-Hernández
Agronomy 2024, 14(5), 1027; https://doi.org/10.3390/agronomy14051027 (registering DOI) - 11 May 2024
Abstract
The use of organic sources presents itself as a viable alternative to mitigate the excessive reliance on chemical fertilizers in agricultural practices. However, in the realm of pineapple cultivation, research exploring the synergy between chemical and organic fertilizers remains scarce. In this context,
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The use of organic sources presents itself as a viable alternative to mitigate the excessive reliance on chemical fertilizers in agricultural practices. However, in the realm of pineapple cultivation, research exploring the synergy between chemical and organic fertilizers remains scarce. In this context, the objective of this research was to evaluate the impact of the combination of chemical and organic fertilizers on the growth and yield of the MD-2 pineapple cultivar under two shade net conditions (installed 45 and 250 days after planting). The experiment was conducted in a split-plot design, with the main plot being the shade net conditions and the sub-plots the five fertilization treatments, which were applied 18 times via drip irrigation (control, 100% chemical fertilization, 50% reduced chemical fertilization, organic fertilization, and a combination of 50% chemical fertilization with organic fertilization). The results showed that the early installation of shade netting 45 days after planting decreases the growth and yield of pineapple; thus, the use of shade netting at this age is not recommended. Regarding fertilization, the combination of 50% chemical fertilization with organic fertilization showed similar growth and yield values compared to 100% conventional chemical fertilization under both shade net conditions. Furthermore, this combination presented similar nitrate and potassium values in the plant and did not negatively affect malic acid content. Therefore, the use of organic fertilizers in pineapple cultivation is a promising strategy to reduce the excessive use of chemical fertilizers, and it could also improve soil fertility.
Full article
(This article belongs to the Section Soil and Plant Nutrition)
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Open AccessArticle
Impact of Fruit Load on the Replenishment Dynamics of Internal Water Reserves in Olive Trees
by
Efthymios Kokkotos, Anastasios Zotos, Vassilios Triantafyllidis and Angelos Patakas
Agronomy 2024, 14(5), 1026; https://doi.org/10.3390/agronomy14051026 (registering DOI) - 11 May 2024
Abstract
Stem refilling has been studied in many forest species, but its impact on olive trees remains underexplored. This study aims to examine the effect of varying fruit loads on stem refilling rates in olive trees. The experiment was conducted in a commercial olive
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Stem refilling has been studied in many forest species, but its impact on olive trees remains underexplored. This study aims to examine the effect of varying fruit loads on stem refilling rates in olive trees. The experiment was conducted in a commercial olive orchard over two years, characterized by a biennial bearing cycle with minimal fruit production in 2021 (“OFF” year) and maximal fruit production in 2022 (“ON” year). Sap flow sensors measured the water volume differences traversing the apex and base of main branches in two experimental trees. Tree water status was monitored using psychrometers, and soil moisture content was continuously recorded. Results suggest that alternate bearing significantly affects the stem refilling process, while soil moisture availability also plays a pivotal role. During the “ON” year, water reserve consumption increased to 63.6% compared to the “OFF” year to meet the water requirements of developing fruits. Replenishment occurred at various times throughout the 24 h period, including early morning, afternoon, and night when stomatal conductance measurements indicated stomatal closure. During the “ON” year, olive trees experienced intense nocturnal replenishment of reserves, regardless of soil moisture, water vapor pressure deficit, or fruit development stage. These findings offer novel insights into olive trees’ rehydration dynamics that can be used to optimize irrigation scheduling and improve water use efficiency.
Full article
(This article belongs to the Special Issue Plant–Water Relationships for Sustainable Agriculture)
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Open AccessArticle
Analysis of Tobacco Straw Return to the Field to Improve the Chemical, Physical, and Biological Soil Properties and Rice Yield
by
Jie Huang, Xinyue Wang, Lili Yang, Yuanhuan Li, Bing Xia, Hailin Li and Xiaohua Deng
Agronomy 2024, 14(5), 1025; https://doi.org/10.3390/agronomy14051025 (registering DOI) - 11 May 2024
Abstract
Straw incorporation into soil contributes significantly to the sustainable development of agriculture. To investigate the impact of tobacco straw returns on a tobacco–rice replanting system, we designed an experiment with two straw return levels and a control group: T1 (full return), T2 (root
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Straw incorporation into soil contributes significantly to the sustainable development of agriculture. To investigate the impact of tobacco straw returns on a tobacco–rice replanting system, we designed an experiment with two straw return levels and a control group: T1 (full return), T2 (root return), and CK (no straw return). Over a three-year field experiment in rice fields in South China, we assessed the effects of tobacco straw return on soil quality, microbial diversity, dry matter accumulation, and yield composition of rice. The results demonstrated that returning tobacco straw to the field effectively enhanced rice yield by positively influencing various soil physical, chemical, and biological properties. Compared to those in the CK treatment, as the soil porosity increased from 9.0% to 12.4%, the mean weight diameter of the soil aggregates substantially increased, ranging from 28.7% to 45.2%. There were significant increases in soil organic matter, total nitrogen, and alkaline dissolved nitrogen. Soil sucrase activity increased between 29.8% and 44.9%, and urease activity increased between 4.3% and 62.2% over the three consecutive years of straw return. The diversity index of soil fungi significantly increased. Additionally, rice yield increased markedly, ranging from 1.8% to 5.1%. Overall, the enhancement effect of T1 surpassed that of T2. According to our comprehensive analysis, the incorporation of tobacco straw into the field was found to enhance the physical properties of the soil, elevate soil enzyme activity, and increase the abundance of soil microorganisms. Consequently, this practice led to improved rice yield and a reduction in agricultural waste output. Overall, the return of tobacco straw to the field represents a clean and dependable approach in rice-cultivated tobacco areas to improve soil health and rice productivity.
Full article
(This article belongs to the Special Issue Effect of Agricultural Management Practices on Soil Microbial Community Composition, Diversity and Function)
Open AccessArticle
Pan-Genome Analysis and Secondary Metabolic Pathway Mining of Biocontrol Bacterium Brevibacillus brevis
by
Jie Du, Binbin Huang, Jun Huang, Qingshan Long, Cuiyang Zhang, Zhaohui Guo, Yunsheng Wang, Wu Chen, Shiyong Tan and Qingshu Liu
Agronomy 2024, 14(5), 1024; https://doi.org/10.3390/agronomy14051024 (registering DOI) - 11 May 2024
Abstract
Brevibacillus brevis is one of the most common biocontrol strains with broad applications in the prevention and control of plant diseases and insect pests. In order to deepen our understanding of B. brevis genomes, describe their characteristics comprehensively, and mine secondary metabolites,
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Brevibacillus brevis is one of the most common biocontrol strains with broad applications in the prevention and control of plant diseases and insect pests. In order to deepen our understanding of B. brevis genomes, describe their characteristics comprehensively, and mine secondary metabolites, we retrieved the genomic sequences of nine B. brevis strains that had been assembled into complete genomes from the NCBI database. These genomic sequences were analyzed using phylogenetic analysis software, pan-genome analysis software, and secondary metabolite mining software. Results revealed that the genome size of B. brevis strains ranged from 6.16 to 6.73 Mb, with GC content ranging from 47.0% to 54.0%. Phylogenetic analysis classified the nine B. brevis strains into three branches. The analyses of ANI and dDDH showed that B. brevis NEB573 had the potential to become a new species of Brevibacillus and needed further research in the future. The pan-genome analysis identified 10032 gene families, including 3257 core gene families, 3112 accessory gene families, and 3663 unique gene families. In addition, 123 secondary metabolite biosynthetic gene clusters of 20 classes were identified in the genomes of nine B. brevis strains. The major types of biosynthetic gene clusters were non-ribosomal peptide synthase (NRPS) and transAT polyketide synthase (transAT-PKS). Furthermore, a large number of untapped secondary metabolites were identified in B. brevis. In summary, this study elucidated the pan-genome characteristics of the biocontrol bacterium B. brevis and identified its secondary metabolites, providing valuable insights for its further development and utilization.
Full article
(This article belongs to the Special Issue Advanced Research on Diagnosis and Biological Control of Crop Diseases)
Open AccessArticle
Assessing the Effectiveness of Pruning in an Olive Orchard Using a Drone and a Multispectral Camera: A Three-Year Study
by
Eliseo Roma, Pietro Catania, Mariangela Vallone and Santo Orlando
Agronomy 2024, 14(5), 1023; https://doi.org/10.3390/agronomy14051023 (registering DOI) - 11 May 2024
Abstract
The uses of precision oliviculture have increased in recent years to improve the quality and quantity of extra virgin olive oil. In traditional and intensive systems, biennial pruning is often applied to balance and maintain plant vigour, aiming at reducing management costs. This
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The uses of precision oliviculture have increased in recent years to improve the quality and quantity of extra virgin olive oil. In traditional and intensive systems, biennial pruning is often applied to balance and maintain plant vigour, aiming at reducing management costs. This study presents the results of a three-year experiment with the objective of quantifying the effects of biennial pruning on the vegetative vigour of olive trees, investigating the geometric and spectral characteristics of each canopy determined with multispectral images acquired by UAV. The experiment was carried out in an olive orchard located in western Sicily (Italy). Multispectral images were acquired using a UAV in automatic flight configuration at an altitude of 70 m a.g.l. The segmentation and classification of the images were performed using Object-Based Image Analysis (OBIA) based on the Digital Elevation Model (DEM) and orthomosaic to extract the canopy area, height, volume and NDVI for each plant. This study showed that the technology and image analysis processing used were able to estimate vigour parameters at different canopy densities, compared to field measurements (R2 = 0.97 and 0.96 for canopy area and volume, respectively). Furthermore, it was possible to determine the amount of removed biomass for each plant and vigour level. Biennial pruning decreased the number of plants initially classified as LV (low-vigour) and maintained a vegetative balance for MV (medium-vigour) and HV (high-vigour) plants, reducing the spatial variability in the field.
Full article
(This article belongs to the Special Issue Effects of Agrotechnical Factors and Farming Systems on Soil Properties and Plant Productivity)
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Open AccessArticle
Organic Phosphorus Fractions in Relation to Soil Aggregate Fractions of Black Soil
by
Stanko Milić, Jordana Ninkov, Jovica Vasin, Tijana Zeremski, Snežana Jakšić, Milorad Živanov, Srđan Šeremešić and Dubravka Milić
Agronomy 2024, 14(5), 1022; https://doi.org/10.3390/agronomy14051022 (registering DOI) - 11 May 2024
Abstract
Knowledge of long-term phosphorus behavior is essential to improve soil structure, nutrient supply potential, and the sustainability of cropping systems. A 45-year long-term experimental trial was used to observe organic phosphorus fractionation and its effects on soil aggregation and nutrient distribution at three
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Knowledge of long-term phosphorus behavior is essential to improve soil structure, nutrient supply potential, and the sustainability of cropping systems. A 45-year long-term experimental trial was used to observe organic phosphorus fractionation and its effects on soil aggregation and nutrient distribution at three depths (0–20, 20–40, and 40–60 cm) in Vojvodina Province, Serbia, under maize monoculture and maize/barley rotation. Five fertilizing systems were studied, including Control, NPK, NPK + maize remains, NPK + manure, and NPK + manure in rotation. Soil aggregates were fractionated into four size categories (>2000, 2000–250, 250–53, and <53 μm) using a wet sieving method. The samples were analyzed for main indicators, including different forms of phosphorus, total and available (PT and PA), as well as its organic forms (Labile Po, Biomass Po, Mod. Labile Po, Fulvic acid Po, Humic acid Po, and Resistant Po), and other fertility parameters. Significant differences in total and available phosphorus as well as all observed organic phosphorus fractions were evident between treatments with and without organic amendments, particularly in the 0–20 and 20–40 cm soil layers. Moderately labile P forms were dominant across all treatments, while labile forms constituted a smaller proportion. The most notable differences between treatments were observed in the labile and moderately labile forms, as well as in the resistant form of organic phosphorus. Manure application led to increased nutrient content in macroaggregates (>250 μm) compared to microaggregates. Microaggregates (<250 μm) were predominant across all depths, while stable structural aggregates did not show a significant increase after manure application. PCA highlighted significant correlations between soil characteristics, including total and available P, total organic carbon, clay content, and enzyme activity, across different aggregate sizes and organic P fractions. Overall, long-term mineral fertilization combined with organic amendment application induced variations in phosphorus fractions and the content of carbon, nitrogen, and phosphorus associated with aggregates in the first two soil layers, except for aggregate size classes.
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(This article belongs to the Section Soil and Plant Nutrition)
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Open AccessArticle
Effect of Mineral Fertilizers and Pesticides Application on Bacterial Community and Antibiotic-Resistance Genes Distribution in Agricultural Soils
by
Ludmila Khmelevtsova, Tatiana Azhogina, Shorena Karchava, Maria Klimova, Elena Polienko, Alla Litsevich, Elena Chernyshenko, Margarita Khammami, Ivan Sazykin and Marina Sazykina
Agronomy 2024, 14(5), 1021; https://doi.org/10.3390/agronomy14051021 (registering DOI) - 11 May 2024
Abstract
Soils are a hotspot for the emergence and spread of antibiotic resistance. The effects of agrochemical treatments on the bacterial community of agricultural soils and the content of antibiotic-resistance genes (ARGs) were studied. Treatments included the following: control, mineral fertilizers (NPKs), pesticides, and
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Soils are a hotspot for the emergence and spread of antibiotic resistance. The effects of agrochemical treatments on the bacterial community of agricultural soils and the content of antibiotic-resistance genes (ARGs) were studied. Treatments included the following: control, mineral fertilizers (NPKs), pesticides, and the combined treatment of soils under soya (Glycine max), sunflower (Helianthus annuus L.), and wheat (Triticum aestivum). Bacterial community taxonomic composition was studied using 16S rRNA gene sequencing. The content of 10 ARGs and 3 integron genes (intI1, intI2, intI3) was determined using quantitative real-time PCR. The results showed that the treatments had little effect on the taxonomic composition and diversity of the soil bacterial community. The most significant factors determining differences in the microbial community were sampling time and soil physico-chemical parameters. A significant role of the bacterial community in ARG distribution in soils was demonstrated. Representatives of the Pseudomonas, Bacillus, Sphingomonas, Arthrobacter genera, and the Nocardioidaceae and Micrococcaceae families were likely ARG hosts. The presence of integron genes of all three classes was detected, the most numerous being intI3. This work provides important information on the role of agricultural soils in ARG transfer, and the findings may be useful for sustainable and safe agricultural development.
Full article
(This article belongs to the Special Issue Effects of the Soil Microbiome on Nutrient Cycling and Soil Health in Agroecosystems)
Open AccessArticle
Effect of Trichoderma spp. Fungi and Phytium oligandrum on Maiden Apple Tree Growth and Photosynthesis in the Nursery
by
Sławomir Świerczyński and Barbara Frąszczak
Agronomy 2024, 14(5), 1020; https://doi.org/10.3390/agronomy14051020 (registering DOI) - 11 May 2024
Abstract
The conducted experiment evaluated the effects of three fungi—Trichoderma atroviride (Ta), Trichoderma harzianum (Th) and Phytium oligandrum (Po)—on the growth of maidens of two apple cultivars, ‘Szampion’ and ‘Topaz’, budded on two rootstocks, M.9 and M.26, in the nursery. The evaluation was
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The conducted experiment evaluated the effects of three fungi—Trichoderma atroviride (Ta), Trichoderma harzianum (Th) and Phytium oligandrum (Po)—on the growth of maidens of two apple cultivars, ‘Szampion’ and ‘Topaz’, budded on two rootstocks, M.9 and M.26, in the nursery. The evaluation was based on the number of maidens obtained and their height, trunk diameter and number and length of lateral shoots, as well as the fresh weight of the leaves and the whole maiden. For the weaker-growing maidens of the ‘Topaz’ cultivar, the activity of the photosynthetic apparatus was additionally measured depending on the rootstock and fungal treatments. The number of maidens obtained improved significantly when Th (8.3–9.0%) and Po (8.4–12.8%) were applied, depending on the rootstock and cultivar used. With the best treatment with the Po fungus, on average, for the two cultivars, maiden apple trees budded on the M.9 dwarf rootstock were characterized by a significantly better height of 6% and trunk diameter of 13% compared to the control. In contrast, trees grown on the M.26 rootstock did not have significantly increased growth after the same treatments, with the exception of the Po fungus, which improved the stem diameter by an average of 10%. The use of fungi stimulated an increase in the number and length of the lateral shoots of maidens of the more easily branching ‘Szampion’ apple tree cultivar. Based on the fluorescence parameters obtained, it can be assumed that the ‘Topaz’ cultivar on the M.26 rootstock is less susceptible to stress conditions, especially those related to high temperatures and drought. All fungi used had a positive effect on the activity of the photosynthetic apparatus. Significantly worse values of the fluorescence parameters were obtained for the control combination compared to the fungal treatments.
Full article
(This article belongs to the Special Issue Plant Production and Microorganism Potential in Modern Agro-Ecosystems-2nd Edition)
Open AccessArticle
QTL Mapping and Candidate Gene Mining for Stem Diameter Using Genetic Basis of Cultivated Soybean and Wild Soybean
by
Lin Chen, Fuxin Li, Lanxin Li, Shengnan Ma, Lin Yu, Chunshuang Tang, Kuangyu Zhao, Zhen Song, Chunyan Liu, Qingshan Chen and Jinhui Wang
Agronomy 2024, 14(5), 1019; https://doi.org/10.3390/agronomy14051019 (registering DOI) - 11 May 2024
Abstract
Soybean (Glycine max) is a vital food crop, serving as a major source of high-quality protein for human and animal consumption. Stem diameter is one of the primary determinants of the stem lodging resistance of a given plant, but there has
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Soybean (Glycine max) is a vital food crop, serving as a major source of high-quality protein for human and animal consumption. Stem diameter is one of the primary determinants of the stem lodging resistance of a given plant, but there has been relatively little research to date focused on genes associated with this trait. To address this gap in the literature, 207 chromosome segment substitution lines (CSSLs) were generated in the present study through the crossing and backcrossing of the improved Suinong14 and the wild ZYD00006 soybean varieties. These CSSLs were then used for the mapping of quantitative trait loci (QTLs) associated with stem diameter in two-year field planting materials, leading to the identification of nine QTLs. Whole genome resequencing, RNA-seq, and qPCR were then used to evaluate candidate genes associated with stem diameter within these QTL intervals, ultimately leading to the selection of Glyma.04G004100 as a stem diameter-related gene. Subsequent qPCR analyses revealed that Glyma.04g004100 was upregulated in soybean plants with larger stem diameters, and haplotype analyses yielded results consistent with these stem diameter data in the population used to conduct this study. In summary, a series of QTLs associated with stem diameter were identified in the present study, resulting in the establishment of Glyma.04g004100 as a stem diameter-related gene. Together, these results offer a theoretical foundation for the future molecular-assisted breeding of lodging-resistant soybean varieties, and future functional research focused on Glyma.04g004100 may elucidate the molecular mechanisms and key signaling networks involved in soybean stem development.
Full article
(This article belongs to the Special Issue Soybean Yield and Quality Improvement)
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Quantitative Relationship of Plant Height and Leaf Area Index of Spring Maize under Different Water and Nitrogen Treatments Based on Effective Accumulated Temperature
by
Tingrui Yang, Jinghua Zhao and Qiuping Fu
Agronomy 2024, 14(5), 1018; https://doi.org/10.3390/agronomy14051018 (registering DOI) - 11 May 2024
Abstract
To optimize the growth management of spring maize, it is essential to understand the dynamics of plant height and leaf area index (LAI) under controlled water and nitrogen supply. This study conducted two-year field experiments (2022–2023) in Karamay, Xinjiang. Three irrigation levels (75%,
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To optimize the growth management of spring maize, it is essential to understand the dynamics of plant height and leaf area index (LAI) under controlled water and nitrogen supply. This study conducted two-year field experiments (2022–2023) in Karamay, Xinjiang. Three irrigation levels (75%, 100%, and 125% of Crop Evapotranspiration (ETc)) and four nitrogen application rates (0, 93, 186, and 279 kg N/ha) were set. A logistic growth model was fitted using accumulated effective temperature as the independent variable to analyze the growth and development characteristics of spring maize under various water and nitrogen conditions. The results demonstrated that the logistic models, based on relative effective accumulated temperature, had a determination coefficient (R2) of over 0.99 and a Normalized Root Mean Square Error (NRMSE) of less than 10%. Irrigation extended the rapid growth phase of plant height, whereas nitrogen application shortened the time to enter this rapid growth phase and prolonged its duration. Irrigation increased the maximum LAI growth rate and shortened and prolonged the rapid growth phase, while nitrogen extended the duration of the rapid growth phase for LAI. The W2N2 treatment, consisting of 100% ETc irrigation and 186 kg N/ha, was identified as the optimal drip irrigation water–nitrogen combination for spring maize in the study area. Under optimal water and nitrogen supply, both the maximum growth rate and the average growth rate during the rapid growth phase were higher, requiring accumulated effective temperatures of 825.16–845.74 °C·d and 856.68–890.00 °C·d, respectively, to reach these rates. The appropriate water and nitrogen supply significantly enhanced the synergistic promotion of growth and development in spring maize. This study provides a theoretical basis for the quantitative analysis of growth dynamics in summer maize using effective accumulated temperature.
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(This article belongs to the Section Water Use and Irrigation)
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Open AccessArticle
Preharvest Applications of Aminoethoxivinylglycine in Mangifera indica L. “Ataulfo” Variety in Two Contrasting Environments
by
Juan Francisco Aguirre-Medina, Francisco Guzmán-Camposeco, María De Lourdes Arévalo-Galarza, Juan Manuel Villarreal-Fuentes and Juan Francisco Aguirre-Cadena
Agronomy 2024, 14(5), 1017; https://doi.org/10.3390/agronomy14051017 (registering DOI) - 11 May 2024
Abstract
Mangifera indica var Ataulfo is the main variety grown in the Soconusco region of Chiapas, Mexico and faces a decrease in firmness and weight loss due to hydrothermal treatment, in addition to non-uniform ripening and consequently a decrease in price as the harvest
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Mangifera indica var Ataulfo is the main variety grown in the Soconusco region of Chiapas, Mexico and faces a decrease in firmness and weight loss due to hydrothermal treatment, in addition to non-uniform ripening and consequently a decrease in price as the harvest period lengthens. In order to improve the postharvest quality of the “Ataulfo” mango fruit, preharvest applications of aminoethoxyvinylglycine (AVG; ReTain®, a.i. 15%) were carried out in “La Norteña” with Phaeozem soil, 1500 mm of annual precipitation, and applications of agrochemicals, and in “Santa Cecilia” with Acrisol soil, 2500 mm of annual precipitation, and without agrochemicals. The treatments were: (1) Control, (2) One application 7 days before harvest (0.1 g L−1), (3) Two applications (14 days and 7 days before harvest, 0.2 g L−1) and (4) Three applications (21, 14 and 7 days before harvest, in total 0.3 g L−1), with completely randomized design in the laboratory. The results show contrasting differences between the evaluation sites, with lower weight loss (18.4%) and 3.1% more firmness in a drier climate and higher soil calcium content. The average firmness (N) on day 14 was 18.3 and with three applications of AVG it was 22.0. The °Brix at the end of the study in the control was 11.3 and on average with AVG applications it was 14.4. Three-time applications of AVG in preharvest delayed the weight loss with an increase in the maintenance of the firmness of the fruits. The weight of the fruit epidermis was lower with AVG applications, and increased with the number of applications.
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(This article belongs to the Section Plant-Crop Biology and Biochemistry)
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Open AccessArticle
Effects of Microbial Inoculants Combined with Chemical Fertilizer on Growth and Soil Nutrient Dynamics of Timothy (Phleum pratense L.)
by
Shanmu He, Ying Zhang, Xiaolei Yang, Qi Li, Changning Li and Tuo Yao
Agronomy 2024, 14(5), 1016; https://doi.org/10.3390/agronomy14051016 (registering DOI) - 10 May 2024
Abstract
Microbial inoculants derived from plant growth-promoting rhizobacteria (PGPR) offer eco-friendly alternatives to traditional chemical fertilizers, maintaining microbiota balance in agricultural systems. However, limited research has explored the combined effects of microbial inoculants and chemical fertilizers on crop growth and soil properties. In this
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Microbial inoculants derived from plant growth-promoting rhizobacteria (PGPR) offer eco-friendly alternatives to traditional chemical fertilizers, maintaining microbiota balance in agricultural systems. However, limited research has explored the combined effects of microbial inoculants and chemical fertilizers on crop growth and soil properties. In this study, we investigated seven fertilizer combinations, ranging from no fertilizer to various proportions of chemical fertilizers with microbial inoculants, on timothy (Phleum pratense L.) growth, chlorophyll content, soil properties, enzyme activities, and soil microbial communities. A randomized block design was employed to analyze these effects. The results indicate that the combination of 85% chemical fertilizer with microbial inoculants significantly increased timothy yield and chlorophyll content. In addition, a reduction to 55% chemical fertilizer in conjunction with microbial inoculants resulted in comparable yield to that of 100% fertilizer with no inoculants. The microbial inoculants treatments notably elevated soil catalase, urease, acid phosphatase, and invertase activities, along with soil fast-acting nutrient content. The sequencing results show that the abundance of beneficial bacteria increased, while that of fungi decreased in the soil rhizosphere after the application of microbial inoculants. This study underscored the potential of microbial inoculants combined with reductions in chemical fertilizers to enhance soil microbiology, nutrient content, and beneficial microbial abundance while suppressing pathogenic fungi, thereby promoting timothy growth and yield. These findings provide a theoretical basis for the use of microbial inoculants in sustainable agricultural practices, providing valuable insights for optimizing microbial inoculants and chemical fertilizer formulations to mitigate the sustainability challenges posed by conventional fertilizers.
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(This article belongs to the Section Grassland and Pasture Science)
Open AccessArticle
Applying Hydrochar Affects Soil Carbon Dynamics by Altering the Characteristics of Soil Aggregates and Microbes
by
Ting Yan, Zherui Zhang, Zhe Zhang, Wenzan Wang, Dong Li, Tao Zhang and Zhiping Zhu
Agronomy 2024, 14(5), 1015; https://doi.org/10.3390/agronomy14051015 (registering DOI) - 10 May 2024
Abstract
Hydrochar as a carbon-based fertiliser is hypothesised to permanently improve soils by modifying soil carbon quality through the regulation of soil organic carbon dynamics, aggregation properties and microbial diversity. However, the interactions between soil organic carbon (SOC) molecular structure, soil aggregates and soil
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Hydrochar as a carbon-based fertiliser is hypothesised to permanently improve soils by modifying soil carbon quality through the regulation of soil organic carbon dynamics, aggregation properties and microbial diversity. However, the interactions between soil organic carbon (SOC) molecular structure, soil aggregates and soil microbial communities as a result of hydrochar application have not been fully elucidated. In this study, the use of hydrochar derived from duck farm biomass waste for a maize cultivation experiment verified that hydrochar had a promoting effect on maize growth, effectively increasing the nutrient supply to the soil. The application of hydrochar increased the soil organic carbon content by 78 to 253 per cent, which was dominated by CHON-type lignin, carbohydrates and condensed aromatic structural compounds. Meanwhile, hydrochar had a significant effect on both soil aromatic structures and oxygenated functional groups, forming more soil macroaggregates. In addition, hydrochar had a positive effect on soil bacterial abundance. This study suggests that the key mechanism by which hydrochar regulates soil carbon dynamics is mainly through the stabilising effect of hydrochar on macroaggregates while increasing the abundance of carbon-related microscopic bacteria. These results will help to elucidate the potential effects of aqueous carbon on the biogeochemical cycling of carbon in soils.
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(This article belongs to the Section Agricultural Biosystem and Biological Engineering)
Open AccessArticle
Effects of Long-Term Rice–Crayfish Coculture Systems on Soil Nutrients, Carbon Pools, and Rice Yields in Northern Zhejiang Province, China
by
Baojun Wang, Hongmei Zhang, Gui Chen, Wangda Cheng and Yaqiang Shen
Agronomy 2024, 14(5), 1014; https://doi.org/10.3390/agronomy14051014 (registering DOI) - 10 May 2024
Abstract
This research was to examine the impacts of long-term integrated rice–crayfish farming on soil nutrients, carbon pools, and rice yields in paddy fields. The aim was to establish a scientific basis for the sustainable development of RS in the northern region of Zhejiang.
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This research was to examine the impacts of long-term integrated rice–crayfish farming on soil nutrients, carbon pools, and rice yields in paddy fields. The aim was to establish a scientific basis for the sustainable development of RS in the northern region of Zhejiang. The results showed that the change from rice monoculture (CK) to rice–crayfish coculture systems (RS) led to a 24.99% increase in the 5-year average of soil ammonium nitrogen (AN), while the soil nitrate nitrogen (NN), available potassium (AK), and available phosphorus content (AP) decreased by 28.02%, 16.05%, and 28.76%, respectively. Moreover, the total organic carbon (TOC), easily oxidizable organic carbon (EOC), dissolved organic carbon (DOC), and microbial biomass carbon (MBC) exhibited a reduction of 2.45%, 8.82%, 35.31%, and 65.84%, respectively. Correlation analysis revealed a significant positive correlation between NN, EOC, and MBC in the RS mode. In terms of rice yield, the 5-year average of rice yield in RS decreased by 8.40% compared to CK. The mean yield of early-maturing rice varieties was reduced by 13.16%, while that of late-maturing rice varieties was reduced by 6.00%. These results shed light on the annual variation in soil nutrients, carbon pools, and rice yield in the RS mode, providing insights for the sustainable development of RS in northern Zhejiang.
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(This article belongs to the Special Issue Effects of Agrotechnical Factors and Farming Systems on Soil Properties and Plant Productivity)
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Open AccessArticle
Effects of Claroideoglomus etunicatum Fungus on the Growth Parameters of Maize (Zea mays L.) Plants under Boron Toxicity and Salt Stress
by
Mehdi Zarei, Narges Abdar, Amir Ghaffar Shahriari, Iman Mirmazloum and András Geösel
Agronomy 2024, 14(5), 1013; https://doi.org/10.3390/agronomy14051013 (registering DOI) - 10 May 2024
Abstract
Soil salinity is an emerging phenomenon threatening arid and semiarid areas due to changing climatic events. Salinity, in combination with other elemental contaminants, can often harm crop performance and productivity. This experiment was conducted to evaluate the mitigating effect of Claroideoglomus etunicatum,
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Soil salinity is an emerging phenomenon threatening arid and semiarid areas due to changing climatic events. Salinity, in combination with other elemental contaminants, can often harm crop performance and productivity. This experiment was conducted to evaluate the mitigating effect of Claroideoglomus etunicatum, an arbuscular mycorrhizal fungus (AMF), on combined boron (B) toxicity and salt stress symptoms in maize plants. After the stress and AMF treatments, plants were subjected to a wide range of analyses, such as AMF colonization rates, ion leakage, plant biomass, and concentration of B, phosphorus, sodium, potassium, iron, zinc, copper, and manganese in root and shoot tissues. The results showed that the combined stress did not affect the AMF colonization rate. AMF inoculation significantly increased plant biomass, the K+/Na+ ratio, and shoot B, sodium, and copper concentrations, but reduced root B concentrations and ion leakage. AMF inoculation slightly increased root dry weight and the sodium, potassium, zinc, copper and Mn contents in shoots under combined B and salinity stress, while AMF reduced the electrolyte leakage in leaves. It is inferred that AMF can ameliorate B toxicity in maize by improving biomass and reducing B concentration in plant tissues. Our research implies that C. etunicatum could be a valuable candidate for assisting in the remediation of boron-contaminated and saline soils.
Full article
(This article belongs to the Section Plant-Crop Biology and Biochemistry)
Open AccessArticle
Soil Amendment Combining Bentonite and Maize Straw Improves Soil Quality Cropped to Oat in a Semi-Arid Region
by
Lanying Zhang, Junzhen Mi, Baoping Zhao, Xuemei Cui, Kexin Hu, Neil B. McLaughlin and Jinghui Liu
Agronomy 2024, 14(5), 1012; https://doi.org/10.3390/agronomy14051012 (registering DOI) - 10 May 2024
Abstract
Soil amendments have been proposed as an effective way to enhance soil carbon stocks on degraded soils, particularly in dryland farming areas. Soil organic carbon (SOC) plays an important role in improving soil quality, and soil aggregates are known to be crucial in
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Soil amendments have been proposed as an effective way to enhance soil carbon stocks on degraded soils, particularly in dryland farming areas. Soil organic carbon (SOC) plays an important role in improving soil quality, and soil aggregates are known to be crucial in sequestering and protecting SOC. However, how aggregation and protection of SOC by aggregates respond to a single application of bentonite combined with maize straw remains unknown, especially in the sandy soil of a semi-arid region. A three-year field experiment with four treatments [no amendment (CK), maize straw amendment addition only (T1, 6 Mg ha–1), bentonite amendment addition only (T2, 18 Mg ha–1), and maize straw combined with bentonite amendment (T3, 6 Mg ha–1 maize straw plus 18 Mg ha–1 bentonite)] was conducted in the Loess Plateau of China to assess the effects of bentonite and maize straw on aggregation and SOC. The results indicated that soil bulk density decreased by 2.72–5.42%, and soil porosity increased by 3.38–8.77% with three years of T3 application, especially in the 20–40 cm layer, compared with CK. T3 increased the amount of C input, SOC stock, and SOC stock sequestration rate by 1.04 Mg ha−1 y−1, 0.84–1.08 Mg ha−1, and 0.49 Mg ha−1 y−1, respectively, and it increased the mass proportions and aggregate-associated C stock of >0.25 mm aggregates by 1.15–2.51- and 1.59–2.96-fold compared with CK. Correlation analysis showed a positive correlation of total SOC stock with the C concentration of >2 mm, 0.25–2 mm, and 0.053–0.25 mm aggregates. Aggregates of various sizes in sandy soils have the potential for greater SOC stock. Our findings suggest that the application of maize straw (6 Mg ha–1) combined with bentonite (18 Mg ha–1) would be an effective management strategy to enhance the bulk soil C pools by improving the soil structure and thereby improving soil fertility.
Full article
(This article belongs to the Special Issue Application of Organic Amendments in Agricultural Production—Volume II)
Open AccessArticle
Calibration and Verification of Discrete Element Parameters of Surface Soil in Camellia Oleifera Forest
by
Xueting Ma, Yong You, Deqiu Yang, Decheng Wang, Yunting Hui, Daoyi Li and Haihua Wu
Agronomy 2024, 14(5), 1011; https://doi.org/10.3390/agronomy14051011 (registering DOI) - 10 May 2024
Abstract
To analyze the interaction between the surface soil and the soil-contacting component (65 Mn) in the camellia oleifera forest planting area in Changsha City, Hunan, China, in this study, we conducted discrete element calibration using physical and simulation tests. The chosen contact model
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To analyze the interaction between the surface soil and the soil-contacting component (65 Mn) in the camellia oleifera forest planting area in Changsha City, Hunan, China, in this study, we conducted discrete element calibration using physical and simulation tests. The chosen contact model was Hertz–Mindlin with JKR cohesion, with the soil repose angle as the response variable. The repose angle of the soil was determined to be 36.03° based on the physical tests. The significant influencing factors of the repose angle determined based on the Plackett–Burman test were the soil–soil recovery coefficient, soil–soil rolling friction coefficient, soil-65 Mn static friction coefficient, and surface energy of soil for the JKR model. A regression model for the repose angle was developed using the Box–Behnken response surface optimization method to identify the best parameter combination. The optimal parameter combination for the JKR model was determined as follows: surface energy of soil: 0.400, soil–soil rolling friction coefficient: 0.040, soil-65 Mn static friction coefficient: 0.404, and soil–soil recovery coefficient: 0.522. The calibrated discrete element parameters were validated through experiments on the repose angle and steel rod insertion. The results indicated that the relative errors obtained from the two verification methods were 2.44% and 1.71%, respectively. This research offers fundamental insights for understanding the interaction between soil and soil-contacting components and optimizing their design.
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(This article belongs to the Topic Advances in Crop Simulation Modelling)
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