Journal Description
Diversity
Diversity
is a peer-reviewed, open access journal on the science of biodiversity from molecules, genes, populations, and species, to ecosystems and is published monthly online by MDPI.
- Open Access— free for readers, with article processing charges (APC) paid by authors or their institutions.
- High Visibility: indexed within Scopus, SCIE (Web of Science), PubAg, GEOBASE, CAPlus / SciFinder, and other databases.
- Journal Rank: JCR - Q2 (Biodiversity Conservation) / CiteScore - Q2 (Agricultural and Biological Sciences (miscellaneous))
- Rapid Publication: manuscripts are peer-reviewed and a first decision is provided to authors approximately 17.8 days after submission; acceptance to publication is undertaken in 2.8 days (median values for papers published in this journal in the second half of 2023).
- Recognition of Reviewers: reviewers who provide timely, thorough peer-review reports receive vouchers entitling them to a discount on the APC of their next publication in any MDPI journal, in appreciation of the work done.
Impact Factor:
2.4 (2022);
5-Year Impact Factor:
2.5 (2022)
Latest Articles
Genetic Diversity and Relationships among Indian Jujube (Ziziphus mauritiana Lamk.) Cultivars Using Morphometric Characteristics, matK Barcoding, and ISSR Markers
Diversity 2024, 16(6), 313; https://doi.org/10.3390/d16060313 (registering DOI) - 23 May 2024
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Indian jujube displays genetic diversity and does not prominently display minute morphometric variations, and this makes correct identification a difficult and long-term task. However, little work has been conducted to bring jujube cultivars into domestication. So, the present study aimed to evaluate eleven
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Indian jujube displays genetic diversity and does not prominently display minute morphometric variations, and this makes correct identification a difficult and long-term task. However, little work has been conducted to bring jujube cultivars into domestication. So, the present study aimed to evaluate eleven cultivars of Indian jujube in terms of the fruit’s morphometric characteristics, as well as molecular marker studies by plastidial megakaryocyte-associated tyrosine kinase (matK) barcoding and inter-simple sequence repeats (ISSR) markers for species differentiation, identification, and relationships among Indian jujube cultivars. The results of the morphometric characteristics showed that the mean geometric diameter, surface area, sphericity, sphericity ratio, shape index, fruit length, fruit diameter, fruit weight, and seed weight varied among cultivars. The results also showed that the color values of L*, a*, and b* for fruits differed in different cultivars. In addition, the results showed a discrepancy in the genetic diversity parameters related to the matK barcoding, ISSR markers, and relationships among Indian jujube cultivars. Substantially, hierarchical clustering by heatmap revealed that ‘Zytoni’ and ‘Um-Sulaem’ with spines seem to be mono-clades distinct from other cultivars, which related to variations in the expression levels of genes. Therefore, they should be relied upon together to distinguish and identify cultivars in order to maximize the effectiveness of local germplasm conservation and exploitation.
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Open AccessArticle
The Role of Experience in the Visual and Non-Visual Prey Recognition of Fire Salamander Populations from Caves and Streams
by
Hayes Hoover, Raoul Manenti and Andrea Melotto
Diversity 2024, 16(6), 312; https://doi.org/10.3390/d16060312 - 22 May 2024
Abstract
The study of foraging behaviour is crucial for understanding several ecological and adaptive processes, as well as for developing conservation measures. While extensive research has been completed on birds and mammals, few studies have been conducted on the learning capabilities of amphibians, particularly
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The study of foraging behaviour is crucial for understanding several ecological and adaptive processes, as well as for developing conservation measures. While extensive research has been completed on birds and mammals, few studies have been conducted on the learning capabilities of amphibians, particularly those pertaining to foraging behaviour. Amphibians may detect potential prey through distinct sensory systems including visual detection, chemoreception, and mechanoreception. In this study, we tested whether fire salamander larvae shift their prey recognition depending on the prey stimulus typology. We performed behavioural assays to better understand the roles of visual and chemical cues in prey recognition and how a continuative visual stimulus may change behavioural patterns. For this assessment, larvae from different habitats (cave and stream) were reared under laboratory conditions and fed while exposed to accompanying sensory stimuli. Their responses to visual and olfactory cues were measured before and after rearing. Both visual and chemical cues significantly affected the time of approach to the stimulus. The period of rearing significantly interacted with the time of approach for both cues. After rearing, when visual cues occurred, the time of approach was much lower than before rearing. These findings provide a basis for further studies on the role of plasticity in the predator–prey interactions of fire salamander larvae.
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(This article belongs to the Special Issue 2024 Feature Papers by Diversity’s Editorial Board Members)
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Open AccessArticle
Changes in Freeze-Thaw Environments in a Cold Lake: Eliciting New Insights into the Activity and Composition of Bacterial Communities
by
Chen Feng, Junping Lu, Yongqin Jia, Zhiqiang Tian, Zixuan Zhang, Yaxin Hu and Yinghui Liu
Diversity 2024, 16(6), 311; https://doi.org/10.3390/d16060311 - 22 May 2024
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This study explored the dynamics of bacterial community composition, response to environmental factors, and co-occurrence network models across different habitats of Wuliangsuhai Lake during the glacial period. Water quality analysis and high-throughput sequencing were performed at 14 monitoring sites within the lake. Additionally,
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This study explored the dynamics of bacterial community composition, response to environmental factors, and co-occurrence network models across different habitats of Wuliangsuhai Lake during the glacial period. Water quality analysis and high-throughput sequencing were performed at 14 monitoring sites within the lake. Additionally, a co-occurrence network between the two bacterial operational taxonomic unit (OTU)-OTUs was established. The results indicated significant differences in water quality indices, namely total nitrogen (TN), chemical oxygen demand (COD), total dissolved solids (TDS), salinity (SAL), chlorophyll-a (Chl.a), and electrical conductivity (EC), between the ice bodies of Wuliangsuhai Lake and subglacial water. Although there were no significant differences in α diversity across various media, substantial differences were observed in β diversity. The VIF and RDA analyses revealed that lake water quality factors significantly affected the microbial community structure and COD and TDS had the highest explanation for the community composition change. Network analysis demonstrated that competition dominated the bacterial community in water bodies with higher complexity and stability and ice body bacteria exhibited more reciprocal relationships and weaker resistance to external environmental disturbances. The co-occurrence network demonstrated a modular structure in the external environment, with g_Flavobacterium, f_Arcobacteraceae, and g_Sphingobacteriaceae being the main keystone species. Investigating the habitat heterogeneity of lake bacterial communities and identifying major groups and key species using molecular ecological network models and their topological effects can provide a theoretical foundation for monitoring and assessing the structural stability of lake ecosystems in cold regions.
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Open AccessArticle
Determinants of Butterfly Community Structure and Composition at the Local Habitat Level: Importance of Neighboring Vegetation and Management Status: A Case Study
by
Masahiko Kitahara and Taisuke Yasuda
Diversity 2024, 16(6), 310; https://doi.org/10.3390/d16060310 - 21 May 2024
Abstract
Exploring the determinants of biological community structure is important not only for understanding the formation of the community, but also for promoting its biodiversity conservation. We monitored butterfly communities in a grassland and woodland area of Mount Fuji, Japan, and explored the environmental
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Exploring the determinants of biological community structure is important not only for understanding the formation of the community, but also for promoting its biodiversity conservation. We monitored butterfly communities in a grassland and woodland area of Mount Fuji, Japan, and explored the environmental factors that influenced them. Multivariate regression tree (MRT) analysis generated a 3-leaved MRT (G1, G2, and G3) and showed the total explained variation of 64.4% in the species composition. The explanatory variables discriminating between the two branches in the first node and in the second node of the MRT were neighboring plant community and management status, respectively. The neighboring plant community was related to the distribution of butterfly dietary resources and contributed a lot in determining the species composition of the community while the management status was largely related to the amount of their dietary resources, affecting the species richness and diversity. The PCA results revealed that the three key groups (G1, G2, and G3) were formed along the gradients of these two factors. Consequently, maintaining mowing management and the diversity of neighboring vegetation is very important for the continuance of butterfly community diversity and composition and the conservation of Red Listed species in the area.
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(This article belongs to the Special Issue Biodiversity, Ecology and Conservation of Lepidoptera)
Open AccessArticle
Elucidating the Disrupted Seasonal Cycle of Eodiaptomus japonicus (Calanoida, Copepoda) in Lake Biwa: Insights from an Individual-Based Model
by
Amane Takahashi, Syuhei Ban, Xin Liu, Sami Souissi, Tomohiro Oda and Gaël Dur
Diversity 2024, 16(6), 309; https://doi.org/10.3390/d16060309 - 21 May 2024
Abstract
The seasonal fluctuations of the copepod Eodiaptomus japonicus, which dominates the zooplankton community of Lake Biwa, have been disrupted several times over the past 45 years. The aim of this study was to clarify the primary environmental factor that caused the disrupted
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The seasonal fluctuations of the copepod Eodiaptomus japonicus, which dominates the zooplankton community of Lake Biwa, have been disrupted several times over the past 45 years. The aim of this study was to clarify the primary environmental factor that caused the disrupted seasonal cycle in population density of E. japonicus. Here, we tested the hypothesis that the disruption in their seasonal cycle was due to the impacts of water temperature, food conditions, and predator pressure, using an individual-based model (IBM). Based on the experimental data from the literature, we described the growth and reproduction of E. japonicus using temperature- and food-dependent functions. Previously, the developmental time of this species was expressed using Bělehrádek’s equation. In this study, we applied the Kontodimas equation, which successfully reproduced the effects of food scarcity at higher temperatures. Additionally, the influence of predators was incorporated into the survival rate of adult individuals. The long-term data set of Lake Biwa was input into the developed model to simulate the population fluctuations during the disruption period (1975–1979) and stable period (1995–1999) of their seasonal cycle. The combination of environmental data to be input was (1) water temperature, food availability, and predators; (2) water temperature and food availability; and (3) water temperature and predators. Disruptions in the seasonal cycle of the population were only observed in scenario (1) during the disruption period simulation, suggesting that the disrupted seasonal cycle of this species in Lake Biwa may have been caused by the effects of both food condition and predators. The results of simulation scenarios (2) and (3) indicated that predators have a stronger impact on the population than food availability. This time, we used common and simple indicators to describe food conditions and predators, but the model can be improved to be more complex and accurate as more data become available. Such models are important tools for understanding the relationship between environmental factors and the dynamics of diaptomid copepod populations.
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(This article belongs to the Special Issue Diversity, Ecology and Conservation of Zooplankton)
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The City as an Evolutionary Hothouse—The Search for Rapid Evolution in Urban Settings
by
Gad Perry and Thomas Göttert
Diversity 2024, 16(6), 308; https://doi.org/10.3390/d16060308 - 21 May 2024
Abstract
Cities are ubiquitous and, though a novel phenomenon by evolutionary standards, provide a home for many species and exert particularly strong and novel selection pressures on them. They thus offer a unique opportunity to study rapid evolutionary processes. We conducted a scoping review
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Cities are ubiquitous and, though a novel phenomenon by evolutionary standards, provide a home for many species and exert particularly strong and novel selection pressures on them. They thus offer a unique opportunity to study rapid evolutionary processes. We conducted a scoping review of published studies documenting evolutionary processes in urban environments, focusing primarily on more recent work. Unfortunately, cities have not been attractive environments for biological research and thus remain poorly studied, despite slowly growing interest in recent years. Nonetheless, we found studies documenting the effects of mutation, genetic drift, and selection in cities. However, studies show some geographic bias and were not always as conclusive as might be desired. There is even support for incipient urban speciation. Evidence across the board is less abundant and less conclusive than desirable, suggesting the need for more data collection. The urban setting, with its stronger selection, more common intermixing, and abundance of both human and widespread potential non-human zoonosis hosts and human-associated species offers great opportunities to further document evolution in action and explore its conservation implications.
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(This article belongs to the Special Issue Diversity in 2024)
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Open AccessArticle
Diversity of Helminths of Insectivorous Mammals (Mammalia: Eulipothyphla) from Large Forest Protected Areas of the Middle Volga Region (European Russia)
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Nadezhda Yu. Kirillova, Alexander A. Kirillov, Alexander B. Ruchin and Alexander I. Fayzulin
Diversity 2024, 16(5), 307; https://doi.org/10.3390/d16050307 - 20 May 2024
Abstract
Insectivores (Eulypotiphla) are a substantial component of Russian forest ecosystems. The parasites of these animals also form an important part of natural biocenoses and act as one of the factors in the formation of biodiversity. The Mordovia Nature Reserve and National Park “Smolny”
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Insectivores (Eulypotiphla) are a substantial component of Russian forest ecosystems. The parasites of these animals also form an important part of natural biocenoses and act as one of the factors in the formation of biodiversity. The Mordovia Nature Reserve and National Park “Smolny” are large, forested areas located in the center of European Russia. We studied the helminth fauna of insectivores in these protected areas in 2018–2022. In total, using the method of complete helminthological necropsy, we examined 478 individuals of shrews, moles, and hedgehogs and recorded 34 species of parasitic worms, i.e., 8 trematode, 7 cestode, 1 acanthocephalan, and 18 nematode species. The most diverse helminth fauna was found in Sorex araneus (22 species). The composition of helminths in S. isodon (12), Neomys fodiens (9), Sorex minutus, and Erinaceus roumanicus (8 species each) turned out to be less diverse. The lowest species diversity of helminths was observed in Neomys milleri (3) and Talpae europaea (2 species). Taking into account the newly obtained data, we conducted a review of the helminth diversity in shrews, hedgehogs, and moles in the Middle Volga region. According to our literature data, the helminth fauna of insectivores in this region consists of 52 species, including 14 cestodes, 13 trematodes, 22 nematodes, and 3 acanthocephalans. Most of them belong to the Palearctic faunal complex (36 species). The helminth fauna of insectivores in the studied protected areas was compared with the helminth fauna of micromammals in other areas of the Middle Volga region. Our comparative analysis showed a high and average degree of similarity in the helminth fauna within individual species and genera of Eulipotyphla.
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(This article belongs to the Section Animal Diversity)
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Open AccessArticle
Multi-Scale Habitat Selection by the Wintering Whooper Swan (Cygnus cygnus) in Manas National Wetland Park, Northwestern China
by
Han Yan, Xuejun Ma, Weikang Yang and Feng Xu
Diversity 2024, 16(5), 306; https://doi.org/10.3390/d16050306 - 20 May 2024
Abstract
Habitat selection has been a central focus of animal ecology, with research primarily concentrating on habitat choice, utilization, and evaluation. However, studies confined to a single scale often fail to reveal the habitat selection needs of animals fully and accurately. This paper investigates
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Habitat selection has been a central focus of animal ecology, with research primarily concentrating on habitat choice, utilization, and evaluation. However, studies confined to a single scale often fail to reveal the habitat selection needs of animals fully and accurately. This paper investigates the wintering whooper swan (Cygnus cygnus) in Manas National Wetland Park, Xinjiang, using satellite tracking to determine their locations. The Maximum Entropy model (MaxEnt) was applied to explore the multi-scales habitat selection needs of Manas National Wetland Park’s wintering whooper swans across nighttime, daytime, and landscape scales. This study showed that the habitat selection of the wintering whooper swans varied in different scales. At the landscape scale, wintering whooper swans prefer habitats with average winter precipitations of 6.9 mm and average temperatures of −6 °C, including water bodies and wetlands, indicating that climate (precipitation and temperature) and land type (wetlands and water bodies) influence their winter habitat selection. During daytime, whooper swans prefer areas close to wetlands, water bodies, and bare land, with a more dispersed distribution of water bodies. For nighttime, they tend to choose areas within the wetland park where human disturbance is minimal and safety is higher. This study can provide scientific basis and data support for habitat conservation and management of wintering waterbirds like whooper swans, recommending targeted conservation measures to effectively manage and protect the wintering grounds of whooper swans.
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(This article belongs to the Section Animal Diversity)
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Open AccessArticle
Plastid Phylogenetics, Biogeography, and Character Evolution of the Chinese Endemic Genus Sinojackia Hu
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Xing Jian, Yuliang Wang, Qiang Li and Yongmei Miao
Diversity 2024, 16(5), 305; https://doi.org/10.3390/d16050305 - 18 May 2024
Abstract
Sinojackia Hu. comprises five to eight Chinese endemic species with high ornamental and medicinal value. However, the generic limits, interspecific relationships and evolutionary history of the genus remain unresolved. In this study, we newly sequenced three plastomes of S. oblongicarpa and compared them
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Sinojackia Hu. comprises five to eight Chinese endemic species with high ornamental and medicinal value. However, the generic limits, interspecific relationships and evolutionary history of the genus remain unresolved. In this study, we newly sequenced three plastomes of S. oblongicarpa and compared them with those of the other congeneric species to explore the taxonomic delimitation of the species and the evolutionary history of the genus. The plastome structure of Sinojackia species was extremely conserved in terms of number of genes, sequence length, and GC content. The codon usage patterns revealed that natural selection may be the main factor shaping codon usage bias. Our phylogenetic tree shows that Sinojackia is monophyletic and can be divided into two clades. Sinojackia oblongicarpa as a distinct species is supported for it is distantly related to S. sarcocarpa. The evolutionary analysis of morphological features indicates that the woody mesocarp is an ancestral feature. Sinojackia originated in central Southeast China during the early Miocene. In this period, it experienced elevated diversification and migrated from central Southeast China to the Hunan Province and the Sichuan Province with the development of the Asian monsoon and East Asian flora. Glacial–interglacial interactions with the monsoon climate may provide favorable expansion conditions for Sinojackia on a small scale.
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(This article belongs to the Special Issue Diversity in 2024)
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Open AccessArticle
How Do Zooplankton Communities Respond to Environmental Factors across the Subsidence Wetlands Created by Underground Coal Mining in the North China Plain?
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Yue Liang, Jianjun Huo, Weiqiang Li, Yutao Wang, Guangyao Wang and Chunlin Li
Diversity 2024, 16(5), 304; https://doi.org/10.3390/d16050304 - 17 May 2024
Abstract
The degradation and loss of natural wetlands has caused severe crises for wetland taxa. Meanwhile, constructed wetlands are expanding significantly and facing dramatic environmental changes. Exploring the responses of wetland organisms, particularly zooplankton, may have important implications for the management of wetlands. Environmental
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The degradation and loss of natural wetlands has caused severe crises for wetland taxa. Meanwhile, constructed wetlands are expanding significantly and facing dramatic environmental changes. Exploring the responses of wetland organisms, particularly zooplankton, may have important implications for the management of wetlands. Environmental and zooplankton samples were collected from 34 subsidence wetlands created by underground coal mining across the North China Plain in August 2021. We used generalized linear models and redundancy analysis to test zooplankton responses to environmental variables, with the relative importance quantified by variation partitioning. We identified 91 species, divided into 7 functional groups, with the highest density of rotifer filter feeders (RF, 2243.4 ± 499.4 ind./L). Zooplankton species richness was negatively correlated with electrical conductivity (EC), chlorophyll-a, total phosphorus, and pH. The Shannon–Weiner and Pielou evenness indices were positively correlated with transparency and negatively correlated with the photovoltaic panel area (AS). Rotifer predators (RCs) and RF densities were positively correlated with cropland area and dissolved oxygen, but negatively correlated with AS. Small crustacean filter feeders positively correlated with AS, whereas medium crustacean feeders (MCFs) positively correlated with EC. AS was the most critical variable affecting the zooplankton community. Our study showed that the spatial pattern of zooplankton communities was shaped by environmental heterogeneity across the subsidence wetlands, providing implications for the management and conservation of these constructed wetlands.
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(This article belongs to the Section Freshwater Biodiversity)
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Open AccessArticle
Two New Species of Hymenogaster (Hymenogastraceae, Agaricales) from China Based on Morphological and Molecular Markers
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Ting Li, Ning Mao, Haoyu Fu, Yuxin Zhang and Li Fan
Diversity 2024, 16(5), 303; https://doi.org/10.3390/d16050303 - 17 May 2024
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Two new species from China, Hymenogaster pseudoniveus and H. zunhuaensis, are described and illustrated based on morphological and molecular evidence. Hymenogaster pseudoniveus is distinguished from other species of the genus based on the color of peridium, which is snow white to white when
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Two new species from China, Hymenogaster pseudoniveus and H. zunhuaensis, are described and illustrated based on morphological and molecular evidence. Hymenogaster pseudoniveus is distinguished from other species of the genus based on the color of peridium, which is snow white to white when unexcavated but then turns yellowish to earth yellow, and the basidiospores, which are ornamented with nearly longitudinally arranged ridges up to 2 μm high. H. zunhuaensis is diagnosed by its dirty white to pale yellow peridium, yellow brown to brown gleba, and the smaller (Lm × Wm = 11.7 μm × 9.8 μm) broadly ellipsoidal to subglobose basidiospores (Q = 1.1–1.3). ITS/LSU-based phylogenetic analysis supports the erection of the two new species, each placed in distinct clades with strong statistical support, suggesting that they represent two distinct species novel to science. Based on the morphological and molecular evidence, we have published two new species of Hymenogaster. A key for Hymenogaster species from China is provided.
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Open AccessArticle
First Account of Epibiotic Diatom Taxa from the Carapaces of Green Swimming Crab Callinectes bellicosus (Stimpson 1859) (Decapoda, Portunidae)
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Francisco Omar López-Fuerte, David Alfaro Siqueiros Beltrones, Luis Hernández and Sergio Flores-Ramírez
Diversity 2024, 16(5), 302; https://doi.org/10.3390/d16050302 - 17 May 2024
Abstract
Diatoms are among the most common epibionts and have been recorded on the surfaces of various living substrates, either plants or animals. However, studies on them are still scarce in view of the many substrata available. In this study, epibiotic diatoms living on
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Diatoms are among the most common epibionts and have been recorded on the surfaces of various living substrates, either plants or animals. However, studies on them are still scarce in view of the many substrata available. In this study, epibiotic diatoms living on Callinectes bellicosus were identified for the first time from a subtropical coastal lagoon in Northwest Mexico. We tested the null hypothesis that the diatom flora living on the carapaces of C. bellicosus would not be similar to that recorded for mangrove sediments, its typical habitat. The epibiotic diatoms were brushed off from the carapaces of two specimens, acid-cleaned, mounted in synthetic resin, and identified based on frustule morphology. This way, 106 taxa from 46 genera were recorded, including 25 singletons, and 6 new records for the Mexican northwest region. The best-represented genera were Nitzschia (10 taxa), Mastogloia (9), Diploneis (8), Navicula (7), Amphora (5), Cocconeis (5), Tryblionella (4), and Gyrosigma (4). Species composition included 93% of local taxa, thus refuting the proposed hypothesis and supporting the alternate one. Although the estimated species richness was lower than that in sediments, it deems the green crab carapace a favorable substrate for the growth of benthic diatoms.
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(This article belongs to the Section Marine Diversity)
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Open AccessArticle
Population Status and Conservation of the Largest Population of the Endangered François’ Langur (Trachypithecus francoisi) in Vietnam
by
Tu A. Le, Anh T. Nguyen, Trung S. Le, Tuan A. Le and Minh D. Le
Diversity 2024, 16(5), 301; https://doi.org/10.3390/d16050301 - 17 May 2024
Abstract
François’ langur is an Endangered colobine inhabiting limestone habitats in southern China and northern Vietnam. Its global population has been estimated to be just more than 2000 mature individuals. Populations in Vietnam are highly fragmented with reportedly fewer than 200 adults in total
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François’ langur is an Endangered colobine inhabiting limestone habitats in southern China and northern Vietnam. Its global population has been estimated to be just more than 2000 mature individuals. Populations in Vietnam are highly fragmented with reportedly fewer than 200 adults in total and 50 in a single location. Although the François’ langur in Vietnam is highly imperiled as remnant populations persist in only three to four sites, little research has been carried out to provide a reliable estimate of its remaining population. In this study, we conducted field surveys in Lam Binh District, Tuyen Quang Province, northeastern Vietnam. In total, we recorded at least 16 groups of François’ langurs, with 156 individuals, raising the total number of individuals by approximately 10% compared to a previous study. The group structure, group size, activity budget, and density of the Lam Binh population resemble those reported in François’ langurs in China and other limestone langur species. The results show that the behavior ecology of limestone langurs significantly differs from that of forest langurs probably because they occupy separate habitats with distinctly different environmental variables. During our surveys, we detected a number of direct threats to this population, namely illegal logging, hunting, firewood collecting, hydropower development, grazing, and mining. It is recommended that the protection forest be elevated to the nature reserve status to better protect the most important population of the François’ langur in Vietnam.
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(This article belongs to the Special Issue Ecology, Conservation and Restoration of Threatened Animal)
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Open AccessArticle
Application of Machine Learning in Ecological Red Line Identification: A Case Study of Chengdu–Chongqing Urban Agglomeration
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Juan Deng, Yu Xie, Ruilong Wei, Chengming Ye and Huajun Wang
Diversity 2024, 16(5), 300; https://doi.org/10.3390/d16050300 - 16 May 2024
Abstract
China’s Ecological Protection Red Lines (ERLs) policy has proven effective in constructing regional ecological security patterns and protecting ecological space. However, the existing methods for the identification of high conservation value areas (HCVAs) usually use physical models, whose parameters and processes are complex
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China’s Ecological Protection Red Lines (ERLs) policy has proven effective in constructing regional ecological security patterns and protecting ecological space. However, the existing methods for the identification of high conservation value areas (HCVAs) usually use physical models, whose parameters and processes are complex and only for a single service, affecting the ERL delineation. In this study, the data-driven machine learning (ML) models were innovatively applied to construct a framework for ERL identification. First, the One-Class Support Vector Machine (OC-SVM) was used to generate negative samples from natural reserves and ecological factors. Second, the supervised ML models were applied to predict the HCVAs by using samples. Third, by applying the same ecological factors, the traditional physical models were used to assess the ecological services of the study area for reference and comparison. Take Chengdu–Chongqing Urban Agglomeration (CY) as a case study, wherein data from 11 factors and 1822 nature reserve samples were prepared for feasibility verification of the proposed framework. The results showed that the area under the receiver operating characteristic curve (AUC) of all ML models was more than 97%, and random forest (RF) achieved the best performance at 99.57%. Furthermore, the land cover had great contributions to the HCVAs prediction, which is consistent with the land use pattern of CY. High-value areas are distributed in the surrounding mountains of CY, with lush vegetation. All of the above results indicated that the proposed framework can accurately identify HCVAs, and that it is more suitable and simpler than the traditional physical model. It can help improve the effectiveness of ERL delimitation and promote the implementation of ERL policies.
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(This article belongs to the Special Issue The Applications of Artificial Intelligence on the Conservation of Biodiversity)
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Open AccessArticle
An Overlooked Group of Citizen Scientists in Non-Indigenous Species (NIS) Information: Shell Collectors and Their Contribution to Molluscan NIS Xenodiversity
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Argyro Zenetos, Christiane Delongueville and Roland Scaillet
Diversity 2024, 16(5), 299; https://doi.org/10.3390/d16050299 - 16 May 2024
Abstract
This work reports on 60 marine alien mollusks from nine countries across the Mediterranean Sea and the Sea of Marmara collected by two Belgian citizen scientists. Some of their published observations concerning collection dates are compared with the year of first publication for
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This work reports on 60 marine alien mollusks from nine countries across the Mediterranean Sea and the Sea of Marmara collected by two Belgian citizen scientists. Some of their published observations concerning collection dates are compared with the year of first publication for these alien mollusks reported in the literature, which enable us to backdate some of their introductions and set new first Mediterranean records for two species. This underlines the importance of collaboration between volunteers and institutional scientists in tracing variations and changes in the environment and biodiversity.
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(This article belongs to the Special Issue 2024 Feature Papers by Diversity’s Editorial Board Members)
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Open AccessArticle
The Effect of Ficus semicordata Fig Quality on the Sex Ratio of Its Pollinating Wasp Ceratosolen gravelyi
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Xiaoyan Yang, Yunfang Guan, Changqi Chen, Ying Zhang, Yulin Yuan, Tiantian Tang, Zongbo Li and Yuan Zhang
Diversity 2024, 16(5), 298; https://doi.org/10.3390/d16050298 - 15 May 2024
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The interaction between fig wasps and their host fig trees (Ficus spp.) is a striking example of an obligate pollination mutualism. Male and female fig wasps are confined within their natal patch instead of panmictic; under this circumstance, mating only occurs between
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The interaction between fig wasps and their host fig trees (Ficus spp.) is a striking example of an obligate pollination mutualism. Male and female fig wasps are confined within their natal patch instead of panmictic; under this circumstance, mating only occurs between individuals of the same patch. This is known as a local mate competition (LMC). It pays foundresses to invest mainly in daughters and to only produce enough sons to ensure that all female offspring can be fertilized, but in nature, pollinating fig wasps may face many problems with host quality, such as limitation of oviposition sites and the nutrition deficiency of the host fig. The sex ratio of wasps can determine the stability of fig–fig wasp mutualistic system and, thus, the stability of other species associated with it. In this study, we controlled the quality of host figs in three ways. The results showed that the host fig age can influence the sex ratio of pollinator offspring, while the foundress numbers and the presence of pollen have no significant effect on it. A compelling explanation for this result is that the sex-dependent mortality occurs. This is a novel finding of how host quality influences the interaction of fig and fig wasps, which can also help us understand the evolution and stability mechanism of this symbiotic system.
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Open AccessArticle
New Updates on the Distribution of Scapania umbrosa (Schrad.) Dumort. (Scapaniaceae, Marchantiophyta) in Pacific Asia
by
Ksenia G. Klimova, Yulia D. Maltseva, Vadim A. Bakalin and Seung Se Choi
Diversity 2024, 16(5), 297; https://doi.org/10.3390/d16050297 - 15 May 2024
Abstract
The distribution of liverworts in the North Pacific is still poorly understood. Scapania umbrosa, which is rare in Asia, was first recorded during the study of the liverwort flora of the Commander Islands (the westernmost Aleutians). The results of the molecular genetic
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The distribution of liverworts in the North Pacific is still poorly understood. Scapania umbrosa, which is rare in Asia, was first recorded during the study of the liverwort flora of the Commander Islands (the westernmost Aleutians). The results of the molecular genetic analysis not only confirmed that the specimen belonged to Scapania umbrosa but also demonstrated the genetic specificity of the discovered population in comparison with the European, Siberian, and Alaskan populations. The island population of Scapania umbrosa is likely a recently diverged isolate of the species. Previously reported data on the distribution of Scapania umbrosa in the Russian Far East from Kamchatka and Kunashir (VBGI Herbarium), as well as from Sakhalin and Southern Primorye (reported in GBIF), are based on misidentifications. Morphological descriptions, distinguishing characters, line drawings, and photographs of Scapania umbrosa based on the collected material are provided.
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(This article belongs to the Section Plant Diversity)
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Open AccessArticle
A Rather Unusual ”Pearl”: Biological Observations of the Hidden Pearlfish Carapus acus (Brünnich, 1768) and Its First Report from Apulian Waters (Salento Peninsula, Southern Italy)
by
Alessandra Martines, Michele Solca, Egidio Trainito, Stefano Piraino and Giulia Furfaro
Diversity 2024, 16(5), 296; https://doi.org/10.3390/d16050296 - 14 May 2024
Abstract
The Salento peninsula in southern Italy (Mediterranean Sea) is a strip of land between the Adriatic and the Ionian Seas, both characterized by local regimes of currents, different geological and physical backgrounds, and quite diversified fauna. In this area, specimens of the sea
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The Salento peninsula in southern Italy (Mediterranean Sea) is a strip of land between the Adriatic and the Ionian Seas, both characterized by local regimes of currents, different geological and physical backgrounds, and quite diversified fauna. In this area, specimens of the sea cucumber Holothuria tubulosa (Brünnich, 1768) (Echinodermata) were collected at four stations in the spring and autumn of 2020 to investigate a possible symbiotic association with the inquiline fish Carapus acus (Brünnich, 1768). Among the collected holothurians, five pearlfish specimens were found in the body cavity of four H. tubulosa collected at 10 m of depth, in autumn, at “Grotta Verde” in Marina di Andrano, Lecce (Ionian Sea). More than half of the sea cucumbers from the latter station hosted the symbiont, suggesting the presence of a shallow population of C. acus inhabiting this coastal area. Furthermore, morphometric analysis carried out on the collected fish helped to shed light on the population dynamics characterizing this neglected species. This is the first report of C. acus from Apulian waters, allowing us to unite previously disjoined areas and providing essential baseline knowledge for planning future in-depth analysis of this difficult-to-study fish in a geographical area that is strategic in terms of the conservation of Mediterranean biodiversity. Furthermore, the range of preferred host species is extended, as C. acus was previously known to prefer other sea cucumber species such as Parastichopus regalis (Cuvier, 1817) instead of H. tubulosa. Finally, the finding of C. acus in a single station and in only one season is not trivial and delivers baseline useful information for future conservation purposes.
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(This article belongs to the Special Issue 2024 Feature Papers by Diversity’s Editorial Board Members)
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Open AccessInteresting Images
Stony Corals and Their Associated Fauna Residing in Marine Lakes under Extreme Environmental Conditions
by
Leontine E. Becking, Stephanie J. Martinez, Ludi Parwadani Aji, Awaludinnoer Ahmad, Adriana Alzate, Mainah Folkers, Dea Fauzia Lestari, Beginer Subhan and Bert W. Hoeksema
Diversity 2024, 16(5), 295; https://doi.org/10.3390/d16050295 - 13 May 2024
Abstract
Tropical marine lakes are small land-locked marine waterbodies occurring in karstic coastal areas. During biodiversity surveys in 12 marine lakes in Raja Ampat, Southwest Papua province, Indonesia, we recorded at least 37 species belonging to 29 genera of hard corals. Their observed associated
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Tropical marine lakes are small land-locked marine waterbodies occurring in karstic coastal areas. During biodiversity surveys in 12 marine lakes in Raja Ampat, Southwest Papua province, Indonesia, we recorded at least 37 species belonging to 29 genera of hard corals. Their observed associated symbiont fauna consisted of bivalve molluscs and polychaete worms. Marine lake temperature ranged from 30.0 to 32.5 °C, acidity from pH 7.6 to 8.1, and salinity from 26.4 to 33.2 ppt. This study provides the first inventory of the marginal coral communities in the extreme habitat of marine lakes, under chronic extreme environmental conditions of higher temperatures, land-based nutrient loads, and sedimentation.
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(This article belongs to the Collection Interesting Images from the Sea)
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Open AccessArticle
Diversity of Pleurostomatid Ciliates: Morphology, Taxonomy and Molecular Phylogeny of Freshwater Isolates Found in a Northern China Wetland, with a Description of Two New Species
by
Gongaote Zhang, Yongqiang Liu, Hongbo Pan, Yujie Liu, Honggang Ma, Zhe Wang, Khaled A. S. Al-Rasheid, Weibo Song and Hunter N. Hines
Diversity 2024, 16(5), 294; https://doi.org/10.3390/d16050294 - 11 May 2024
Abstract
Ciliates of the order Pleurostomatida play essential functions in microbial food webs from a variety of habitats and have been thought to possess a high level of diversity. Due to undersampling and often absent molecular data, the actual diversity and phylogenetic relationships within
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Ciliates of the order Pleurostomatida play essential functions in microbial food webs from a variety of habitats and have been thought to possess a high level of diversity. Due to undersampling and often absent molecular data, the actual diversity and phylogenetic relationships within this group remain unclarified. To help address this deficiency, a survey of freshwater pleurostomatid ciliates was undertaken in Lake Weishan Wetland, northern China. Here, two new Amphileptus species, Amphileptus sinicus sp. nov. and Amphileptus piscinarius sp. nov., were investigated using modern morphological and molecular techniques. Amphileptus sinicus sp. nov. is characterized by possessing a comparatively large cell size of 330–490 μm, contractile vacuoles on both ventral and dorsal margins, and 8–10 left and 42–61 right kineties. Amphileptus piscinarius sp. nov. is characterized by possessing a cell size of 140–210 μm, a large distinctly developed apical extrusome group, 3–4 contractile vacuoles on the ventral margin, and 6–8 left and 24–28 right kineties. Phylogenetic results based on the 18S rRNA gene data of these two species group them with other congeners, with these data suggesting the genus Amphileptus is paraphyletic.
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(This article belongs to the Special Issue Diversity, Ecology and Genetics of Ciliates)
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