Relationships among the A Genomes of Triticum L. Species as Evidenced by SSR Markers, in Iran
Abstract
:1. Introduction
2. Results and Discussion
2.1. Genetic Similarity Analysis
2.2. Analysis of Molecular Variance (AMOVA)
3. Experimental Section
Statistical Analyses
4. Conclusion
Acknowledgments
References
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Marker | Chr. Loc. | Ann. Temp. | Allele Fr. | Allele No | HE | HO | PIC |
---|---|---|---|---|---|---|---|
gwm-601 | 4A | 60 | 0.37 | 15 | 0.7 | 0.85 | 0.66 |
gwm-135 | 1A | 60 | 0.28 | 14 | 0.84 | 0.66 | 0.83 |
gwm-71 | 2A | 60 | 0.22 | 18 | 0.86 | 0.86 | 0.85 |
gwm-666 | 1A, 3A, 5A, 7A | 60 | 0.22 | 22 | 0.86 | 0.98 | 0.84 |
gwm-311 | 2A, 2B, 6B | 60 | 0.23 | 12 | 0.86 | 0.27 | 0.85 |
gwm-359 | 2A | 55 | 0.23 | 14 | 0.86 | 0.75 | 0.85 |
gwm-512 | 2A | 60 | 0.29 | 5 | 0.75 | 0.12 | 0.70 |
gwm-372 | 2A | 60 | 0.23 | 14 | 0.88 | 0.24 | 0.87 |
gwm-391 | 3A | 55 | 0.22 | 18 | 0.79 | 0.81 | 0.77 |
gwm-757 | 3A | 60 | 0.27 | 14 | 0.84 | 0.74 | 0.83 |
gwm-155 | 3A | 60 | 0.34 | 8 | 0.77 | 0 | 0.74 |
gwm-291 | 5A | 60 | 0.41 | 16 | 0.77 | 0.59 | 0.74 |
gwm-494 | 6A, 4A, 3A, 1B | 60 | 0.34 | 12 | 0.77 | 0.87 | 0.74 |
gwm-427 | 6A | 50 | 0.13 | 20 | 0.92 | 0.24 | 0.92 |
gwm-635 | 7A, 7B, 7D | 60 | 0.20 | 11 | 0.86 | 0.63 | 0.85 |
gwm-332 | 7A | 60 | 0.23 | 12 | 0.85 | 0.67 | 0.84 |
gwm-296 | 2A, 2D, 7D | 55 | 0.14 | 18 | 0.78 | 0.49 | 0.76 |
gwm-471 | 7A, 7B | 60 | 0.26 | 12 | 0.85 | 0.39 | 0.84 |
gwm-260 | 7A | 55 | 0.21 | 13 | 0.87 | 0.83 | 0.86 |
gwm-459 | 6A | 55 | 0.46 | 9 | 0.73 | 0.25 | 0.71 |
gwm-179 | 5A | 55 | 0.31 | 5 | 0.77 | 0.62 | 0.74 |
gwm-382 | 2A, 2B, 2D | 60 | 0.27 | 15 | 0.86 | 0.26 | 0.85 |
gwm-205 | 5A, 5D | 60 | 0.23 | 19 | 0.9 | 0.8 | 0.89 |
gwm-136 | 1A | 60 | 0.41 | 6 | 0.68 | 0.5 | 0.63 |
wmc-104 | 1A, 6B | 55 | 0.44 | 10 | 0.74 | 0.22 | 0.72 |
barc-56 | 5A | 55 | 0.32 | 15 | 0.78 | 0.5 | 0.75 |
barc-151 | 5A, 7A | 55 | 0.19 | 13 | 0.88 | 0.14 | 0.87 |
cfa-2086 | 2A | 60 | 0.19 | 17 | 0.86 | 0.46 | 0.85 |
cfa-2028 | 7A | 55 | 0.33 | 9 | 0.75 | 0.72 | 0.72 |
cfa-2262 | 3A | 55 | 0.22 | 13 | 0.77 | 0.2 | 0.74 |
cfa-2263 | 2A | 60 | 0.17 | 11 | 0.88 | 0.25 | 0.87 |
Mean | 0.29 | 12.8 | 0.79 | 0.49 | 0.77 | ||
Sum | 410 |
Groups | Species | Genetic Similarity |
---|---|---|
diplo & diplo | T. monococcum & T.boeoticum | 0.89 |
T. monococcum & T. urartu | 0.90 | |
T.boeoticum & T. urartu | 0.90 | |
tetra & tetra | T. durum & T. turgidum | 0.86 |
T. durum & T. dicoccum | 0.79 | |
T. durum & T. dicoccoides | 0.78 | |
T. turgidum & T. dicoccum | 0.79 | |
T. turgidum & T. dicoccoides | 0.78 | |
T. dicoccum & T. dicoccoides | 0.70 | |
diplo & tetra | T. monococcum & T. durum | 0.85 |
T. monococcum & T. turgidum | 0.66 | |
T. monococcum & T. dicoccum | 0.74 | |
T.monococcum&T.dicoccoides | 0.74 | |
T. boeoticum & T. durum | 0.82 | |
T. boeoticum & T. turgidum | 0.65 | |
T. boeoticum & T. dicoccum | 0.66 | |
T. boeoticum & T. dicoccoides | 0.69 | |
T. urartu & T. durum | 0.84 | |
T. urartu & T. turgidum | 0.64 | |
T. urartu & T. dicoccum | 0.75 | |
T. urartu & T. dicoccoides | 0.76 | |
diplo & hexa | T. monococcum & T. aestivum | 0.77 |
T. boeoticum & T. aestivum | 0.72 | |
T. urartu & T. aestivum | 0.72 | |
tetra & hexa | T. durum & T. aestivum | 0.89 |
T. turgidum & T. aestivum | 0.86 | |
T. dicoccum & T. aestivum | 0.64 | |
T. dicoccoides & T. aestivum | 0.67 |
Source of variation | d.f | Sum of squares | Mean of squares | Percentage of variation | Variance components | P-value |
---|---|---|---|---|---|---|
Among Ploidy levels (groups) | 2 | 235.865 | 117.932 | 7.00 | 2.30879 | <0.001 |
Among species Within groups | 5 | 286.738 | 57.347 | 17.44 | 5.75630 | <0.001 |
Among accessions | 47 | 1172.161 | 24.939 | 75.56 | 24.93959 | 0.10948 ± 0.00939 |
Total | 54 | 1694.764 | 200.218 | 100 | 33.00468 |
Species | Collection label | Genome | Locality and altitude (m) |
---|---|---|---|
T. monococcum | T. mono-30 | A | Kermanshah, Gardaneh Reno (1480) |
T. mono -10 | A | Kordestan, 3 km to Saghez (1620) | |
T. mono -41 | A | Isfahan, Semirom to yasooj (2100) | |
T. mono -39 | A | Arak to Malayer (2020) | |
T. mono -40 | A | Tehran, Taleghan valley (1850) | |
T. mono Syria | A | Provided by Institute of Plant Biology of the University of Zurich | |
T.boeoticum subsp. thaodar | T.b.t.-37 | A | Kordestan, 5 km after Jenan to Saghez (1770) |
T.b.t.-8 | A | Chaharmahal Bakhtiari, Shahr-e-Kord, Shapoorabad to Jooneghan (2090) | |
T.b.t.-34 | A | Arak 15 km to Malayer (1840) | |
T.boeoticum subsp. boeoticum | T.b.b.-19 | A | Ilam to Kermanshah, Gardaneh Reno (1370) |
T.b.b.-5 | A | Lorestan, 35 km to Khoramabad from Malavi (1100) | |
T.b.b.-20 | A | Kermanshah 10 km to Harsin (1330) | |
T.b.b.-86 | A | Kermanshah to Kamyaran (1340) | |
T.b.b.-3 | A | Kohkiloye & Boyerahmad,Yasooj, Amirabad (1650) | |
T.urartu | T.ura-156 | A | West Azarbaijan, Makoo (1580) |
T.ura-84 | A | Ardabil (1320) | |
T.ura-2 | A | Kordestan, 10 km Saghez from Asadabad (1440) | |
T.ura-8 | A | Aradbil, 10 km to Kaghazkanan (1349) | |
T.ura-59 | A | Chaharmahal Bakhtiari, between Gandoman and Lordegan (2080) | |
T.ura-Lebanon | A | Provided by Institute of Plant Biology of the University of Zurich | |
T.durum | T.duru-86 | AB | Kermanshah, Kamyaran (1440) |
T.duru-24 | AB | Lorestan, Malavi toward Khoram Abad (1200) | |
T.duru-166 | AB | Chahar mahal Bakhtiari, DoAb Samsami (2000) | |
T.duru-1 | AB | Kohkiloye & Boyerahmad (990) | |
T.duru-165 | AB | Chahar mahal Bakhtiari, near Chaghakhor lake (2190) | |
T.duru-109 | AB | West Azarbaijan, Sardasht to Baneh (1050) | |
T.duru-15 | AB | Khoosestan, Haftgel to Masjed Soleiman (550) | |
T.duru-126 | AB | Kordestan, Alamoot 6 Km (1660) | |
T.duru-7 | AB | Chahar mahal Bakhtiari, Borojen to Izeh (2190) | |
T.duru-Turky | AB | Provided by Institute of Plant Biology of the University of Zurich | |
T.duru-Greece | AB | Provided by Institute of Plant Biology of the University of Zurich | |
T. turgidum | T.turgi-211 | AB | West Azarbaijan, Khoi (1110) |
T.turgi-45 | AB | Chahar mahal Bakhtiari, Bazoft (2190) | |
T.turgi-2 | AB | Kohkiloye & Boyerahmad, Yasooj (2880) | |
T.turgi-43 | AB | Chahar mahal Bakhtiari, Bazoft, Morez valley (2000) | |
T.turgi-8 | AB | Chahar mahal Bakhtiari, Borojen to Izeh (2190) | |
T.turgi-10 | AB | Khoosestan, Izeh (900) | |
T.turgi-194 | AB | Kordestan, between Sanandaj and Saghez (1595) | |
T.turgi-80 | AB | Kermanshah, Mahi Dasht (1290) | |
T.turgi-25 | AB | Lorestan, Malavi toward Khoram Abad (1200) | |
T.turgi-120 | AB | East Azarbaijan, Ahar (1320) | |
T. dicoccum | T.dicoc-Turkey | AB | Provided by Institute of Plant Biology of the University of Zurich |
T.dicoc-Iran (Isfahan) | AB | Provided by Institute of Plant Biology of the University of Zurich | |
T. dicoccoides | T.dicocds-Iran (Kermanshah) | AB | Provided by Institute of Plant Biology of the University of Zurich |
T.dicocds-Turkey | AB | Provided by Institute of Plant Biology of the University of Zurich | |
T. aestivum | T.aest-47 | ABD | Chahar mahal Bakhtiari (2000) |
T.aest-74 | ABD | Ilam, Do Rahe (1410) | |
T.aest-129 | ABD | Booshehr, Bandargah to Deilam (17) | |
T.aest-73 | ABD | Khoosestan, Karkheh (13) | |
T.aest-97 | ABD | Mlayer toward Arak, 50Km (2010) | |
T.aest-96 | ABD | Tehran, Firooz kouh1 (700) | |
T.aest-107 | ABD | West Azarbaijan, Boukan to Mahabad (1290) | |
T.aest-49 | ABD | Isfahan, Daran (2190) | |
T.aest-82 | ABD | Kermanshah, Mahi Dasht (1290) | |
Chinese spring | C.S. | ABD | Provided by Institute of Plant Biology of the University of Zurich |
© 2010 by the authors; licensee Molecular Diversity Preservation International, Basel, Switzerland. This article is an open-access article distributed under the terms and conditions of the Creative Commons Attribution license (http://creativecommons.org/licenses/by/3.0/).
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Ehtemam, M.H.; Rahiminejad, M.R.; Saeidi, H.; Tabatabaei, B.E.S.; Krattinger, S.G.; Keller, B. Relationships among the A Genomes of Triticum L. Species as Evidenced by SSR Markers, in Iran. Int. J. Mol. Sci. 2010, 11, 4309-4325. https://doi.org/10.3390/ijms11114309
Ehtemam MH, Rahiminejad MR, Saeidi H, Tabatabaei BES, Krattinger SG, Keller B. Relationships among the A Genomes of Triticum L. Species as Evidenced by SSR Markers, in Iran. International Journal of Molecular Sciences. 2010; 11(11):4309-4325. https://doi.org/10.3390/ijms11114309
Chicago/Turabian StyleEhtemam, Mohammad Hosein, Mohammad Reza Rahiminejad, Hojjatollah Saeidi, Badraldin Ebrahim Sayed Tabatabaei, Simon G. Krattinger, and Beat Keller. 2010. "Relationships among the A Genomes of Triticum L. Species as Evidenced by SSR Markers, in Iran" International Journal of Molecular Sciences 11, no. 11: 4309-4325. https://doi.org/10.3390/ijms11114309