Reference sequence (1): tr|C5ILC2|C5ILC2_9VIRU/1558 Identities normalised by aligned length. Colored by: consensus/70% |
cov pid 1 [ . . . . : . . . 80 1 tr|C5ILC2|C5ILC2_9VIRU/1558 100.0% 100.0% MSQSKEVKSFLWLQTLRRELSPFCTDVRAKVINGLDFSMVSDVQRLMRKDKRNDEDLMKLRELNQTVDGLVDLKSSNKKN 2 sp|P13699|NCAP_LASSJ/1569 100.0% 59.3% MSASKEIKSFLWTQSLRRELSGYCSNIKLQVLHGLDFSEVSNVQRLMRKERRDDNDLKRLRDLNQAVNNLVELKSTQQKS 3 sp|P09992|NCAP_LYCVA/1558 99.3% 60.9% MSLSKEVKSFQWTQALRRELQSFTSDVKAAVLNGLDFSEVSNVQRIMRKEKRDDKDLQRLRSLNQTVHSLVDLKSTSKKN 4 sp|Q91PB2|NCAP_WWAVU/1562 99.8% 47.9% -MSDQSVPSFRWTQSLRRGLSAWTTSVKADVLSGLDFAKVASVQRMMRRVKRDDSDLVGLRDLNKEVDSLMIMKSNQKNM 5 sp|B2C4J1|NCAP_CHAVB/1562 99.8% 48.5% MSNSKEIPSFRWTQSLRRELSSFTIPVKSDVADGLDFSQVALVQRVLRKTKRTDGDLDKLRDLNREVDNLMAMKSAQKNT 6 sp|Q90038|NCAP_SABVB/1562 99.8% 49.8% MSNSKEIPSFRWTQSLRRGLSEFTTPVKTDVLDGLDFNQVSLVQRILRKSKRNDGDLDKLRDLNKEVDNLMSMKSSQRDT 7 sp|Q8AZ66|NCAP_GTOVV/1560 99.6% 48.0% MAHSKEIPSFRWTQSLRRELGMFTEPTKSSVADSLDFTQVSQVQRLLRKSKRGDTDLDKLRDLNKEVDRLMSMKSVQNNT 8 sp|P14239|NCAP_JUNIN/1564 99.6% 45.9% MAHSKEVPSFRWTQSLRRGLSQFTQTVKSDVADSIDFNQVAQVQRALRKTKRGEEDLNKLRDLNKEVDRLMSMRSVQRNT 9 sp|P26578|NCAP_MACHU/1564 99.6% 47.6% MAHSKEIPSFRWTQSLRRGLSQVHPTVKTDVADSIDFNQVSQVQRALRKNKRGEEDLNKLRDLNKEVDRLMSMKSIQKNT consensus/100% ...sppl.SF.WhQsLRRtLt.hp.sh+.tVhpulDFs.Vu.VQRhhR+.+Rs-tDL.tLRpLNptVptLh.h+S.ppp. consensus/90% ...sppl.SF.WhQsLRRtLt.hp.sh+.tVhpulDFs.Vu.VQRhhR+.+Rs-tDL.tLRpLNptVptLh.h+S.ppp. consensus/80% MutSKEl.SFhWTQoLRRtLu.as.slKspVhsulDFspVu.VQRhhRKpKRs-tDL.+LR-LNppVcpLhthKSsppps consensus/70% MupSKEl.SFpWTQSLRRtLStaspsVKssVhsuLDFspVupVQRhhRKsKRsDpDLp+LRDLNppVDpLhshKSsQ+ps cov pid 81 . 1 . . . . : . 160 1 tr|C5ILC2|C5ILC2_9VIRU/1558 100.0% 100.0% RVGVGKLTSDELMILATDLEKLKKKVTRTEA--RGPGVYRGNLSQDQLGRRSELLNMIGMGTPRP----TRNTVVRVWDV 2 sp|P13699|NCAP_LASSJ/1569 100.0% 59.3% ILRVGTLTSDDLLILAADLEKLKSKVIRTERP-LSAGVYMGNLSSQQLDQRRALLNMIGMSGGNQGARAGRDGVVRVWDV 3 sp|P09992|NCAP_LYCVA/1558 99.3% 60.9% VLKVGRLSAEELMSLAADLEKLKAKIMRSERP-QASGVYMGNLTTQQLDQRSQILQIVGMRKPQQ----GASGVVRVWDV 4 sp|Q91PB2|NCAP_WWAVU/1562 99.8% 47.9% FLKVGSLSKDELMELSSDLEKLKQKVQRTERVGNGTGQYQGNLSNTQLTRRSEILQLVGIQRAGL---APTGGVVKIWDI 5 sp|B2C4J1|NCAP_CHAVB/1562 99.8% 48.5% ILKLGDLNKSELMDLASDLEKLKKKVGQTERS-PVGGVYLGNLSQSQLSKRTDLLRRLGFQQPQV---R-STGVVRIWDV 6 sp|Q90038|NCAP_SABVB/1562 99.8% 49.8% ILKLGDLNKSELMDLASDLEKLKRKVGQTERS-ASGGVYLGNLSQSQLTKRSDLLRKLGFQQQQV---R-SPGVVRIWDV 7 sp|Q8AZ66|NCAP_GTOVV/1560 99.6% 48.0% VLKVGDLGKDELMDLASDLEKLKKKIGDRESN--SPRMYMGNLTQSQLEKRAGILRTLGFQQQRG---A-AGGVVRLWDV 8 sp|P14239|NCAP_JUNIN/1564 99.6% 45.9% VFKAGDLGRVERMELASGLGNLKTKFRRAETG--SQGVYMGNLSQSQLAKRSEILRTLGFQQQGT---G-GNGVVRVWDV 9 sp|P26578|NCAP_MACHU/1564 99.6% 47.6% IFKIGDLGRDELMELASDLEKLKNKIKRTESG--PQGLYMGNLSQLQLTKRSEILKTLGFQQQRG---A-GNGVVRIWDV consensus/100% hhthGpLst.-hh.LussLtpLKtKh.ptEt...s.t.Y.GNLop.QLtpRttlLphlGhtt.t......tssVV+lWDl consensus/90% hhthGpLst.-hh.LussLtpLKtKh.ptEt...s.t.Y.GNLop.QLtpRttlLphlGhtt.t......tssVV+lWDl consensus/80% hh+lGpLspsELM.LAuDLEKLKpKlhpsEps..s.GhYhGNLoppQLspRstlLphlGhpp.t......tsGVVRlWDV consensus/70% llKlGcLspsELMpLAoDLEKLKpKltcoEps..usGlYhGNLSppQLs+RoplLphlGhpp.p....t.ssGVVRlWDV cov pid 161 . . . 2 . . . . 240 1 tr|C5ILC2|C5ILC2_9VIRU/1558 100.0% 100.0% KDSSLLNNQFGTMPSLTLACLTRQTRVDLNDSVQACVDLGLIYTAKFPNMDDLDKLKNKHPVLDYVSNCDSAINISGYNL 2 sp|P13699|NCAP_LASSJ/1569 100.0% 59.3% KNAELLNNQFGTMPSLTLACLTKQGQVDLNDAVQALTDLGLIYTAKYPNTSDLDRLTQSHPILNMIDTKKSSLNISGYNF 3 sp|P09992|NCAP_LYCVA/1558 99.3% 60.9% KDSSLLNNQFGTMPSLTMACMAKQSQTPLNDVVQALTDLGLLYTVKYPNLNDLERLKDKHPVLGVITEQQSSINISGYNF 4 sp|Q91PB2|NCAP_WWAVU/1562 99.8% 47.9% KDPSLLVNQFGSVPAVTISCMTEQGGESLNDVVQGLTDLGLLYTAKYPNLNDLKALTTKHPSLNIITQEESQINISGYNL 5 sp|B2C4J1|NCAP_CHAVB/1562 99.8% 48.5% ADPTRLNNQFGSVPALTIACMTVQGGDTMGNVVQALTSLGLLYTVKFPNLADLEKLAAEHDCLQIITKDESAINISGYNF 6 sp|Q90038|NCAP_SABVB/1562 99.8% 49.8% ADPNRLNNQFGSVPALTIACMTKQSDNTMGDVVQALTSLGLLYTVKFPNLIDLEKLTAEHDCLQIVTKDESGLNISGYNY 7 sp|Q8AZ66|NCAP_GTOVV/1560 99.6% 48.0% SDPSKLNNQFGSMPALTIACMTVQGGETMNNVVQALTSLGLLYTVKYPNLDDLEKLTLEHDCLQIITKDESALNISGYNF 8 sp|P14239|NCAP_JUNIN/1564 99.6% 45.9% KDPSKLNNQFGSVPALTIACMTVQGGETMNSVIQALTSLGLLYTVKYPNLSDLDRLTQEHDCLQIVTKDESSINISGYNF 9 sp|P26578|NCAP_MACHU/1564 99.6% 47.6% SDPSKLNNQFGSMPALTIACMTVQGGETMNSVVQALTSLGLLYTVKYPNLNDLDKLTLEHECLQIVTKDESSINISGYNF consensus/100% tssphLsNQFGohPulThuChs.Qst.shssslQuhssLGLlYTsKaPNh.DLctLt.pH..LthlspppStlNISGYNh consensus/90% tssphLsNQFGohPulThuChs.Qst.shssslQuhssLGLlYTsKaPNh.DLctLt.pH..LthlspppStlNISGYNh consensus/80% tDsshLNNQFGohPuLTlAChThQut.shsssVQALTsLGLlYTsKaPNhsDL-+Lp.cHssLphloppcSulNISGYNh consensus/70% pDsohLNNQFGohPuLTlACMThQutpshNsVVQALTsLGLLYTsKaPNLsDL-+LstcHssLpllTpc-SulNISGYNa cov pid 241 : . . . . 3 . . 320 1 tr|C5ILC2|C5ILC2_9VIRU/1558 100.0% 100.0% SLASLVKAGSRNIDDVIKATLTARNKVQMFVSEVPGERNPYENLLYKICLSGEGWPYISSRTSIKGRSWDNTVIDMTP-- 2 sp|P13699|NCAP_LASSJ/1569 100.0% 59.3% SLGAAVKAGPQTMDGILKSILKVKKALGMFISDTPGERNPYENILYKICLSGDGWPYIASRTSITGRAWENTVVDLESDG 3 sp|P09992|NCAP_LYCVA/1558 99.3% 60.9% SLGAAVKAGPSNSEDLLKAVLGAKRKLNMFVSDQVGDRNPYENILYKVCLSGEGWPYIACRTSIVGRAWENTTIDLTSE- 4 sp|Q91PB2|NCAP_WWAVU/1562 99.8% 47.9% SLSAAVKAGESTFTTVIKTLLEVKNKEKMFVSPTPGQRNPYENVLYKLCLSGDGWPYIASRSQIKGRAWDNTVVEFDT-- 5 sp|B2C4J1|NCAP_CHAVB/1562 99.8% 48.5% SLSAAVKAGPDNFSTIIKTVLGVKKRENMFIDERPGNRNPYENLLYKLCLSGEGWPYIGSRSQVKGRSWENTTVDLSL-- 6 sp|Q90038|NCAP_SABVB/1562 99.8% 49.8% SLSAAVKAGPDNFSQIIKTTLSIKKKEGMFVDEKPGNRNPYENLLYKICLSGEGWPYIGSRSQIKGRSWENTTVDLST-- 7 sp|Q8AZ66|NCAP_GTOVV/1560 99.6% 48.0% SLSAAVKAGPNNFSSIVKAALNVKRREGMFIDERPGNRNPYENLLYKLCLSGEGWPYIGSRSQILGRSWDNTSVDLNA-- 8 sp|P14239|NCAP_JUNIN/1564 99.6% 45.9% SLSAAVKADPDNFSSLIKSTIQVKRREGMFIDEKPGNRNPYENLLYKLCLSGDGWPYIGSRSQIIGRSWDNTSIDLTR-- 9 sp|P26578|NCAP_MACHU/1564 99.6% 47.6% SLSAAVKAGPDNFSSLIKSTLQVKRKEGMFIDEKPGNRNPYENLLYKLCLSGDGWPYIGSRSQILGRSWDNTSVDLTK-- consensus/100% SLuuhVKAs.ps.ptllKshlth+pt.tMFls..sGpRNPYENlLYKlCLSG-GWPYIusRoplhGRuW-NTsl-hp... consensus/90% SLuuhVKAs.ps.ptllKshlth+pt.tMFls..sGpRNPYENlLYKlCLSG-GWPYIusRoplhGRuW-NTsl-hp... consensus/80% SLuAAVKAGspshssllKshLtsKp+.tMFls-pPGpRNPYENlLYKlCLSG-GWPYIuSRopIhGRuW-NTslDhs... consensus/70% SLuAAVKAGPsNhssllKssLplK++.sMFls-pPGpRNPYENlLYKlCLSG-GWPYIuSRopIhGRuW-NTslDLst.. cov pid 321 . . : . . . . 4 400 1 tr|C5ILC2|C5ILC2_9VIRU/1558 100.0% 100.0% --KDPTPPQGVSFSQSQLLDDIMKNLNPKGRTWMDIEGRPDDPVEIAIFQFYRTDQKQGMDFTQLCSTQPGLTTAVLERL 2 sp|P13699|NCAP_LASSJ/1569 100.0% 59.3% KPQKADSNNGLTYSQLMTLKDAMLQLDPNAKTWMDIEGRPEDPVEIALYQFFRTDLKQGIDVTDLFATQPGLTSAVIDAL 3 sp|P09992|NCAP_LYCVA/1558 99.3% 60.9% KPAVNSPRPGLSYSQTMLLKDLMGGIDPNAPTWIDIEGRFNDPVEIAIFQFYRVDQKQGMDLADLFNAQPGLTSSVIGAL 4 sp|Q91PB2|NCAP_WWAVU/1562 99.8% 47.9% ATVKEPIPITLKPEIENQVKRSVESLLINDTTWIDIEGPPNDPVEFAIYQCYRNDIKSGILLKDVENARPGLISSIIRSL 5 sp|B2C4J1|NCAP_CHAVB/1562 99.8% 48.5% KPTQGPKAPHLTEIQESVVREAMSKINPSHTTWIDIEGTSNDPVELALYQCYRHDEKGGMLLKDLESAQPGLLSYIIGLL 6 sp|Q90038|NCAP_SABVB/1562 99.8% 49.8% KPQQGPRTPHLTELQESVVREAMGKIDPTLTTWIDIEGTSNDPVELALYQCYRHDEKGGMLLKDLESAQPGLLSYVIGLL 7 sp|Q8AZ66|NCAP_GTOVV/1560 99.6% 48.0% RPVTGPRAPNLSEMQEAIVKEAMRKLDSSDTIWMDIEGPPTDPVELAVFQCFRHDEKGGILLKDLEDAQPGLLSYVIGLL 8 sp|P14239|NCAP_JUNIN/1564 99.6% 45.9% KPVAGPRQPNLTEIQEAVIREAVGKLDPTNTLWLDIEGPATDPVEMALFQCFRHDEKGGILMKDIEDAMPGVLSYVIGLL 9 sp|P26578|NCAP_MACHU/1564 99.6% 47.6% KPQVGPRQPNLTEMQEAVIKEAVKKLDPTNTLWLDIEGPPTDPVELALYQCFRHDEKGGILMQDIEDAMPGVLSYVIGLL consensus/100% .....s...tlp......lcc.h.tl..p..hWhDIEG..pDPVEhAlaQhaR.D.KtGh.htpl.ss.PGlho.llt.L consensus/90% .....s...tlp......lcc.h.tl..p..hWhDIEG..pDPVEhAlaQhaR.D.KtGh.htpl.ss.PGlho.llt.L consensus/80% ts..ss...tLo..Qp.hl+-hhtplssstphWhDIEG.ssDPVEhAlaQhaRpD.KtGh.hpDl.ss.PGlhS.lIthL consensus/70% +P.tss.tssLo..Qptll+-uhtplsPssshWhDIEG.ssDPVElAlaQhaRpDpKtGh.hpDlpsApPGLhShVIshL cov pid 401 . . . . : . . ] 478 1 tr|C5ILC2|C5ILC2_9VIRU/1558 100.0% 100.0% PLGMVIEKEASRKFEDQVWDSYKTFCNQHTGIVVTKSKK-GK-----KEITPHCALMDCRNLLPADMIFRTAAKLSL- 2 sp|P13699|NCAP_LASSJ/1569 100.0% 59.3% PRNMVIRKTDSRKYENAVWDQYKDLCHMHTGVVVEKKKRGGK-----EEITPHCALMDCRAVLPRDMVFRTSTPRVVL 3 sp|P09992|NCAP_LYCVA/1558 99.3% 60.9% PQGMVIRKEASREYEDKVWDKYGWLCKMHTGIVRDKK----K-----KEITPHCALMDCHNILPHDLIFRGPNVVTL- 4 sp|Q91PB2|NCAP_WWAVU/1562 99.8% 47.9% PKSMVIRKEESRIFEDLVWKRFEHLCDKHKGIVIKSKKKGSTP----ATTNAHCALLDGKRMLPIDLLFREPETTVVL 5 sp|B2C4J1|NCAP_CHAVB/1562 99.8% 48.5% PQDMVIKRDQARNYEEQVWSDFGHLCKKHNGVVVPKKKKDKDPS---QSTEPHCALLDCQSLLPEVLLFTMKPAFAI- 6 sp|Q90038|NCAP_SABVB/1562 99.8% 49.8% PQNMVIRREQARKFEEPIWSDFGHLCKKHNGVIVPKKKKDKDIP---QSSEPHCALLDCEGLLPDALLFTLEAAFTI- 7 sp|Q8AZ66|NCAP_GTOVV/1560 99.6% 48.0% PQGSVIKKEQSRIFEQEVWEKFGHLCRAHNGVIVPKKKNKEA----NSTKEPHCALLDCIQLLPNTLVFQAKSAFVM- 8 sp|P14239|NCAP_JUNIN/1564 99.6% 45.9% PPDMVIRKEQARQFDQQVWEKFGHLCKHHNGVVVSKKKRDKDAPFKLASSEPHCALLDCTPLLPPSLLFLPKAAYAL- 9 sp|P26578|NCAP_MACHU/1564 99.6% 47.6% PQDMVIRKDQARLYDQQIWEKFGHLCKHHNGVVVNKKKREKDSPFKLSSGEPHCALLDCVALLPLSLLFLPKAAFAL- consensus/100% P.s.VIc+ptuR.a-p.lWppat.hCp.HpGllh.pp....t.....tp.psHCALhDs..hLP.shlF.....hsh. consensus/90% P.s.VIc+ptuR.a-p.lWppat.hCp.HpGllh.pp....t.....tp.psHCALhDs..hLP.shlF.....hsh. consensus/80% P.sMVI++-tuR.a-p.lWppatpLCchHsGlll.KKKp.tp.....tp.pPHCALhDC.tlLP.shlFh..sshsl. consensus/70% PpsMVI+K-puR.aEptVWccataLC+tHsGlVVsKKK+ttc.....pphpPHCALhDCpslLP.sLlFp.tsshsl. |
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