Reference sequence (1): tr|C5ILC2|C5ILC2_9VIRU/1558
Identities normalised by aligned length.
Colored by: consensus/70%
                                 cov    pid   1 [        .         .         .         .         :         .         .         . 80 
1 tr|C5ILC2|C5ILC2_9VIRU/1558 100.0% 100.0%     MSQSKEVKSFLWLQTLRRELSPFCTDVRAKVINGLDFSMVSDVQRLMRKDKRNDEDLMKLRELNQTVDGLVDLKSSNKKN    
2 sp|P13699|NCAP_LASSJ/1569   100.0%  59.3%     MSASKEIKSFLWTQSLRRELSGYCSNIKLQVLHGLDFSEVSNVQRLMRKERRDDNDLKRLRDLNQAVNNLVELKSTQQKS    
3 sp|P09992|NCAP_LYCVA/1558    99.3%  60.9%     MSLSKEVKSFQWTQALRRELQSFTSDVKAAVLNGLDFSEVSNVQRIMRKEKRDDKDLQRLRSLNQTVHSLVDLKSTSKKN    
4 sp|Q91PB2|NCAP_WWAVU/1562    99.8%  47.9%     -MSDQSVPSFRWTQSLRRGLSAWTTSVKADVLSGLDFAKVASVQRMMRRVKRDDSDLVGLRDLNKEVDSLMIMKSNQKNM    
5 sp|B2C4J1|NCAP_CHAVB/1562    99.8%  48.5%     MSNSKEIPSFRWTQSLRRELSSFTIPVKSDVADGLDFSQVALVQRVLRKTKRTDGDLDKLRDLNREVDNLMAMKSAQKNT    
6 sp|Q90038|NCAP_SABVB/1562    99.8%  49.8%     MSNSKEIPSFRWTQSLRRGLSEFTTPVKTDVLDGLDFNQVSLVQRILRKSKRNDGDLDKLRDLNKEVDNLMSMKSSQRDT    
7 sp|Q8AZ66|NCAP_GTOVV/1560    99.6%  48.0%     MAHSKEIPSFRWTQSLRRELGMFTEPTKSSVADSLDFTQVSQVQRLLRKSKRGDTDLDKLRDLNKEVDRLMSMKSVQNNT    
8 sp|P14239|NCAP_JUNIN/1564    99.6%  45.9%     MAHSKEVPSFRWTQSLRRGLSQFTQTVKSDVADSIDFNQVAQVQRALRKTKRGEEDLNKLRDLNKEVDRLMSMRSVQRNT    
9 sp|P26578|NCAP_MACHU/1564    99.6%  47.6%     MAHSKEIPSFRWTQSLRRGLSQVHPTVKTDVADSIDFNQVSQVQRALRKNKRGEEDLNKLRDLNKEVDRLMSMKSIQKNT    
  consensus/100%                                ...sppl.SF.WhQsLRRtLt.hp.sh+.tVhpulDFs.Vu.VQRhhR+.+Rs-tDL.tLRpLNptVptLh.h+S.ppp.    
  consensus/90%                                 ...sppl.SF.WhQsLRRtLt.hp.sh+.tVhpulDFs.Vu.VQRhhR+.+Rs-tDL.tLRpLNptVptLh.h+S.ppp.    
  consensus/80%                                 MutSKEl.SFhWTQoLRRtLu.as.slKspVhsulDFspVu.VQRhhRKpKRs-tDL.+LR-LNppVcpLhthKSsppps    
  consensus/70%                                 MupSKEl.SFpWTQSLRRtLStaspsVKssVhsuLDFspVupVQRhhRKsKRsDpDLp+LRDLNppVDpLhshKSsQ+ps    

                                 cov    pid  81          .         1         .         .         .         .         :         . 160
1 tr|C5ILC2|C5ILC2_9VIRU/1558 100.0% 100.0%     RVGVGKLTSDELMILATDLEKLKKKVTRTEA--RGPGVYRGNLSQDQLGRRSELLNMIGMGTPRP----TRNTVVRVWDV    
2 sp|P13699|NCAP_LASSJ/1569   100.0%  59.3%     ILRVGTLTSDDLLILAADLEKLKSKVIRTERP-LSAGVYMGNLSSQQLDQRRALLNMIGMSGGNQGARAGRDGVVRVWDV    
3 sp|P09992|NCAP_LYCVA/1558    99.3%  60.9%     VLKVGRLSAEELMSLAADLEKLKAKIMRSERP-QASGVYMGNLTTQQLDQRSQILQIVGMRKPQQ----GASGVVRVWDV    
4 sp|Q91PB2|NCAP_WWAVU/1562    99.8%  47.9%     FLKVGSLSKDELMELSSDLEKLKQKVQRTERVGNGTGQYQGNLSNTQLTRRSEILQLVGIQRAGL---APTGGVVKIWDI    
5 sp|B2C4J1|NCAP_CHAVB/1562    99.8%  48.5%     ILKLGDLNKSELMDLASDLEKLKKKVGQTERS-PVGGVYLGNLSQSQLSKRTDLLRRLGFQQPQV---R-STGVVRIWDV    
6 sp|Q90038|NCAP_SABVB/1562    99.8%  49.8%     ILKLGDLNKSELMDLASDLEKLKRKVGQTERS-ASGGVYLGNLSQSQLTKRSDLLRKLGFQQQQV---R-SPGVVRIWDV    
7 sp|Q8AZ66|NCAP_GTOVV/1560    99.6%  48.0%     VLKVGDLGKDELMDLASDLEKLKKKIGDRESN--SPRMYMGNLTQSQLEKRAGILRTLGFQQQRG---A-AGGVVRLWDV    
8 sp|P14239|NCAP_JUNIN/1564    99.6%  45.9%     VFKAGDLGRVERMELASGLGNLKTKFRRAETG--SQGVYMGNLSQSQLAKRSEILRTLGFQQQGT---G-GNGVVRVWDV    
9 sp|P26578|NCAP_MACHU/1564    99.6%  47.6%     IFKIGDLGRDELMELASDLEKLKNKIKRTESG--PQGLYMGNLSQLQLTKRSEILKTLGFQQQRG---A-GNGVVRIWDV    
  consensus/100%                                hhthGpLst.-hh.LussLtpLKtKh.ptEt...s.t.Y.GNLop.QLtpRttlLphlGhtt.t......tssVV+lWDl    
  consensus/90%                                 hhthGpLst.-hh.LussLtpLKtKh.ptEt...s.t.Y.GNLop.QLtpRttlLphlGhtt.t......tssVV+lWDl    
  consensus/80%                                 hh+lGpLspsELM.LAuDLEKLKpKlhpsEps..s.GhYhGNLoppQLspRstlLphlGhpp.t......tsGVVRlWDV    
  consensus/70%                                 llKlGcLspsELMpLAoDLEKLKpKltcoEps..usGlYhGNLSppQLs+RoplLphlGhpp.p....t.ssGVVRlWDV    

                                 cov    pid 161          .         .         .         2         .         .         .         . 240
1 tr|C5ILC2|C5ILC2_9VIRU/1558 100.0% 100.0%     KDSSLLNNQFGTMPSLTLACLTRQTRVDLNDSVQACVDLGLIYTAKFPNMDDLDKLKNKHPVLDYVSNCDSAINISGYNL    
2 sp|P13699|NCAP_LASSJ/1569   100.0%  59.3%     KNAELLNNQFGTMPSLTLACLTKQGQVDLNDAVQALTDLGLIYTAKYPNTSDLDRLTQSHPILNMIDTKKSSLNISGYNF    
3 sp|P09992|NCAP_LYCVA/1558    99.3%  60.9%     KDSSLLNNQFGTMPSLTMACMAKQSQTPLNDVVQALTDLGLLYTVKYPNLNDLERLKDKHPVLGVITEQQSSINISGYNF    
4 sp|Q91PB2|NCAP_WWAVU/1562    99.8%  47.9%     KDPSLLVNQFGSVPAVTISCMTEQGGESLNDVVQGLTDLGLLYTAKYPNLNDLKALTTKHPSLNIITQEESQINISGYNL    
5 sp|B2C4J1|NCAP_CHAVB/1562    99.8%  48.5%     ADPTRLNNQFGSVPALTIACMTVQGGDTMGNVVQALTSLGLLYTVKFPNLADLEKLAAEHDCLQIITKDESAINISGYNF    
6 sp|Q90038|NCAP_SABVB/1562    99.8%  49.8%     ADPNRLNNQFGSVPALTIACMTKQSDNTMGDVVQALTSLGLLYTVKFPNLIDLEKLTAEHDCLQIVTKDESGLNISGYNY    
7 sp|Q8AZ66|NCAP_GTOVV/1560    99.6%  48.0%     SDPSKLNNQFGSMPALTIACMTVQGGETMNNVVQALTSLGLLYTVKYPNLDDLEKLTLEHDCLQIITKDESALNISGYNF    
8 sp|P14239|NCAP_JUNIN/1564    99.6%  45.9%     KDPSKLNNQFGSVPALTIACMTVQGGETMNSVIQALTSLGLLYTVKYPNLSDLDRLTQEHDCLQIVTKDESSINISGYNF    
9 sp|P26578|NCAP_MACHU/1564    99.6%  47.6%     SDPSKLNNQFGSMPALTIACMTVQGGETMNSVVQALTSLGLLYTVKYPNLNDLDKLTLEHECLQIVTKDESSINISGYNF    
  consensus/100%                                tssphLsNQFGohPulThuChs.Qst.shssslQuhssLGLlYTsKaPNh.DLctLt.pH..LthlspppStlNISGYNh    
  consensus/90%                                 tssphLsNQFGohPulThuChs.Qst.shssslQuhssLGLlYTsKaPNh.DLctLt.pH..LthlspppStlNISGYNh    
  consensus/80%                                 tDsshLNNQFGohPuLTlAChThQut.shsssVQALTsLGLlYTsKaPNhsDL-+Lp.cHssLphloppcSulNISGYNh    
  consensus/70%                                 pDsohLNNQFGohPuLTlACMThQutpshNsVVQALTsLGLLYTsKaPNLsDL-+LstcHssLpllTpc-SulNISGYNa    

                                 cov    pid 241          :         .         .         .         .         3         .         . 320
1 tr|C5ILC2|C5ILC2_9VIRU/1558 100.0% 100.0%     SLASLVKAGSRNIDDVIKATLTARNKVQMFVSEVPGERNPYENLLYKICLSGEGWPYISSRTSIKGRSWDNTVIDMTP--    
2 sp|P13699|NCAP_LASSJ/1569   100.0%  59.3%     SLGAAVKAGPQTMDGILKSILKVKKALGMFISDTPGERNPYENILYKICLSGDGWPYIASRTSITGRAWENTVVDLESDG    
3 sp|P09992|NCAP_LYCVA/1558    99.3%  60.9%     SLGAAVKAGPSNSEDLLKAVLGAKRKLNMFVSDQVGDRNPYENILYKVCLSGEGWPYIACRTSIVGRAWENTTIDLTSE-    
4 sp|Q91PB2|NCAP_WWAVU/1562    99.8%  47.9%     SLSAAVKAGESTFTTVIKTLLEVKNKEKMFVSPTPGQRNPYENVLYKLCLSGDGWPYIASRSQIKGRAWDNTVVEFDT--    
5 sp|B2C4J1|NCAP_CHAVB/1562    99.8%  48.5%     SLSAAVKAGPDNFSTIIKTVLGVKKRENMFIDERPGNRNPYENLLYKLCLSGEGWPYIGSRSQVKGRSWENTTVDLSL--    
6 sp|Q90038|NCAP_SABVB/1562    99.8%  49.8%     SLSAAVKAGPDNFSQIIKTTLSIKKKEGMFVDEKPGNRNPYENLLYKICLSGEGWPYIGSRSQIKGRSWENTTVDLST--    
7 sp|Q8AZ66|NCAP_GTOVV/1560    99.6%  48.0%     SLSAAVKAGPNNFSSIVKAALNVKRREGMFIDERPGNRNPYENLLYKLCLSGEGWPYIGSRSQILGRSWDNTSVDLNA--    
8 sp|P14239|NCAP_JUNIN/1564    99.6%  45.9%     SLSAAVKADPDNFSSLIKSTIQVKRREGMFIDEKPGNRNPYENLLYKLCLSGDGWPYIGSRSQIIGRSWDNTSIDLTR--    
9 sp|P26578|NCAP_MACHU/1564    99.6%  47.6%     SLSAAVKAGPDNFSSLIKSTLQVKRKEGMFIDEKPGNRNPYENLLYKLCLSGDGWPYIGSRSQILGRSWDNTSVDLTK--    
  consensus/100%                                SLuuhVKAs.ps.ptllKshlth+pt.tMFls..sGpRNPYENlLYKlCLSG-GWPYIusRoplhGRuW-NTsl-hp...    
  consensus/90%                                 SLuuhVKAs.ps.ptllKshlth+pt.tMFls..sGpRNPYENlLYKlCLSG-GWPYIusRoplhGRuW-NTsl-hp...    
  consensus/80%                                 SLuAAVKAGspshssllKshLtsKp+.tMFls-pPGpRNPYENlLYKlCLSG-GWPYIuSRopIhGRuW-NTslDhs...    
  consensus/70%                                 SLuAAVKAGPsNhssllKssLplK++.sMFls-pPGpRNPYENlLYKlCLSG-GWPYIuSRopIhGRuW-NTslDLst..    

                                 cov    pid 321          .         .         :         .         .         .         .         4 400
1 tr|C5ILC2|C5ILC2_9VIRU/1558 100.0% 100.0%     --KDPTPPQGVSFSQSQLLDDIMKNLNPKGRTWMDIEGRPDDPVEIAIFQFYRTDQKQGMDFTQLCSTQPGLTTAVLERL    
2 sp|P13699|NCAP_LASSJ/1569   100.0%  59.3%     KPQKADSNNGLTYSQLMTLKDAMLQLDPNAKTWMDIEGRPEDPVEIALYQFFRTDLKQGIDVTDLFATQPGLTSAVIDAL    
3 sp|P09992|NCAP_LYCVA/1558    99.3%  60.9%     KPAVNSPRPGLSYSQTMLLKDLMGGIDPNAPTWIDIEGRFNDPVEIAIFQFYRVDQKQGMDLADLFNAQPGLTSSVIGAL    
4 sp|Q91PB2|NCAP_WWAVU/1562    99.8%  47.9%     ATVKEPIPITLKPEIENQVKRSVESLLINDTTWIDIEGPPNDPVEFAIYQCYRNDIKSGILLKDVENARPGLISSIIRSL    
5 sp|B2C4J1|NCAP_CHAVB/1562    99.8%  48.5%     KPTQGPKAPHLTEIQESVVREAMSKINPSHTTWIDIEGTSNDPVELALYQCYRHDEKGGMLLKDLESAQPGLLSYIIGLL    
6 sp|Q90038|NCAP_SABVB/1562    99.8%  49.8%     KPQQGPRTPHLTELQESVVREAMGKIDPTLTTWIDIEGTSNDPVELALYQCYRHDEKGGMLLKDLESAQPGLLSYVIGLL    
7 sp|Q8AZ66|NCAP_GTOVV/1560    99.6%  48.0%     RPVTGPRAPNLSEMQEAIVKEAMRKLDSSDTIWMDIEGPPTDPVELAVFQCFRHDEKGGILLKDLEDAQPGLLSYVIGLL    
8 sp|P14239|NCAP_JUNIN/1564    99.6%  45.9%     KPVAGPRQPNLTEIQEAVIREAVGKLDPTNTLWLDIEGPATDPVEMALFQCFRHDEKGGILMKDIEDAMPGVLSYVIGLL    
9 sp|P26578|NCAP_MACHU/1564    99.6%  47.6%     KPQVGPRQPNLTEMQEAVIKEAVKKLDPTNTLWLDIEGPPTDPVELALYQCFRHDEKGGILMQDIEDAMPGVLSYVIGLL    
  consensus/100%                                .....s...tlp......lcc.h.tl..p..hWhDIEG..pDPVEhAlaQhaR.D.KtGh.htpl.ss.PGlho.llt.L    
  consensus/90%                                 .....s...tlp......lcc.h.tl..p..hWhDIEG..pDPVEhAlaQhaR.D.KtGh.htpl.ss.PGlho.llt.L    
  consensus/80%                                 ts..ss...tLo..Qp.hl+-hhtplssstphWhDIEG.ssDPVEhAlaQhaRpD.KtGh.hpDl.ss.PGlhS.lIthL    
  consensus/70%                                 +P.tss.tssLo..Qptll+-uhtplsPssshWhDIEG.ssDPVElAlaQhaRpDpKtGh.hpDlpsApPGLhShVIshL    

                                 cov    pid 401          .         .         .         .         :         .         .       ] 478
1 tr|C5ILC2|C5ILC2_9VIRU/1558 100.0% 100.0%     PLGMVIEKEASRKFEDQVWDSYKTFCNQHTGIVVTKSKK-GK-----KEITPHCALMDCRNLLPADMIFRTAAKLSL-    
2 sp|P13699|NCAP_LASSJ/1569   100.0%  59.3%     PRNMVIRKTDSRKYENAVWDQYKDLCHMHTGVVVEKKKRGGK-----EEITPHCALMDCRAVLPRDMVFRTSTPRVVL    
3 sp|P09992|NCAP_LYCVA/1558    99.3%  60.9%     PQGMVIRKEASREYEDKVWDKYGWLCKMHTGIVRDKK----K-----KEITPHCALMDCHNILPHDLIFRGPNVVTL-    
4 sp|Q91PB2|NCAP_WWAVU/1562    99.8%  47.9%     PKSMVIRKEESRIFEDLVWKRFEHLCDKHKGIVIKSKKKGSTP----ATTNAHCALLDGKRMLPIDLLFREPETTVVL    
5 sp|B2C4J1|NCAP_CHAVB/1562    99.8%  48.5%     PQDMVIKRDQARNYEEQVWSDFGHLCKKHNGVVVPKKKKDKDPS---QSTEPHCALLDCQSLLPEVLLFTMKPAFAI-    
6 sp|Q90038|NCAP_SABVB/1562    99.8%  49.8%     PQNMVIRREQARKFEEPIWSDFGHLCKKHNGVIVPKKKKDKDIP---QSSEPHCALLDCEGLLPDALLFTLEAAFTI-    
7 sp|Q8AZ66|NCAP_GTOVV/1560    99.6%  48.0%     PQGSVIKKEQSRIFEQEVWEKFGHLCRAHNGVIVPKKKNKEA----NSTKEPHCALLDCIQLLPNTLVFQAKSAFVM-    
8 sp|P14239|NCAP_JUNIN/1564    99.6%  45.9%     PPDMVIRKEQARQFDQQVWEKFGHLCKHHNGVVVSKKKRDKDAPFKLASSEPHCALLDCTPLLPPSLLFLPKAAYAL-    
9 sp|P26578|NCAP_MACHU/1564    99.6%  47.6%     PQDMVIRKDQARLYDQQIWEKFGHLCKHHNGVVVNKKKREKDSPFKLSSGEPHCALLDCVALLPLSLLFLPKAAFAL-    
  consensus/100%                                P.s.VIc+ptuR.a-p.lWppat.hCp.HpGllh.pp....t.....tp.psHCALhDs..hLP.shlF.....hsh.    
  consensus/90%                                 P.s.VIc+ptuR.a-p.lWppat.hCp.HpGllh.pp....t.....tp.psHCALhDs..hLP.shlF.....hsh.    
  consensus/80%                                 P.sMVI++-tuR.a-p.lWppatpLCchHsGlll.KKKp.tp.....tp.pPHCALhDC.tlLP.shlFh..sshsl.    
  consensus/70%                                 PpsMVI+K-puR.aEptVWccataLC+tHsGlVVsKKK+ttc.....pphpPHCALhDCpslLP.sLlFp.tsshsl.    

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