Identification of Candidate Gene for Internode Length in Rice to Enhance Resistance to Lodging Using QTL Analysis
Abstract
:1. Introduction
2. Results
2.1. Comparison of Agricultural Characteristics and Phenotypic Evaluation
2.2. QTL Analysis Associated with the Length and Stem Diameter of Each Internode
2.3. Based on QTL Mapping Search Candidate Gene
2.4. The Homology Sequence of Candidate Gene and Phylogenetic Tree Analysis
3. Discussion
4. Materials and Methods
4.1. Plant Material and Field Experiment Design
4.2. Phenotype Evaluation
4.3. QTL Analysis
4.4. Statistical Analysis and Gene Information Analysis
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Plant Traits | Year | Parents | DH Population | |
---|---|---|---|---|
Cheongcheong | Nagdong. | |||
LP (cm) | 2019 | 21.9 ± 1.0 | 18.6 ± 1.1 | 19.5 ± 2.4 |
2020 | 21.5 ± 0.7 | 20.6 ± 2.2 | 19.5 ± 2.5 | |
LUI (cm) | 2019 | 32.5 ± 1.1 | 30.8 ± 1.3 | 30.1 ± 5.2 |
2020 | 31.2 ± 0.5 | 30.8 ± 2.6 | 30.0 ± 5.3 | |
LSI (cm) | 2019 | 18.6 ± 1.2 | 16.9 ± 1.4 | 16.6 ± 4.2 |
2020 | 18.3 ± 0.6 | 15.9 ± 1.1 | 16.7 ± 4.3 | |
LTI (cm) | 2019 | 13.7 ± 1.1 | 11.4 ± 1.2 | 12.2 ± 3.8 |
2020 | 14.8 ± 1.1 | 12.1 ± 1.8 | 12.1 ± 3.7 | |
LFI (cm) | 2019 | 7.8 ± 1.0 | 4.5 ± 0.2 | 6.8 ± 3.8 |
2020 | 9.4 ± 0.6 | 5.3 ± 1.3 | 6.6 ± 3.7 | |
LLI (cm) | 2019 | 2.8 ± 0.5 | 2.4 ± 0.3 | 2.1 ± 2.4 |
2020 | 3.5 ± 0.5 | 2.1 ± 0.3 | 2.0 ± 2.4 | |
SDUI (mm) | 2019 | 2.5 ± 0.4 | 1.4 ± 0.1 | 2.1 ± 0.45 |
2020 | 2.4 ± 0.2 | 1.8 ± 0.3 | 2.1 ± 0.45 | |
SDSI (mm) | 2019 | 4.5 ± 0.3 | 3.0 ± 0.1 | 3.6 ± 0.6 |
2020 | 4.3 ± 0.5 | 3.3 ± 0.3 | 3.5 ± 0.6 | |
SDTI (mm) | 2019 | 6.0 ± 0.5 | 4.0 ± 0.2 | 4.3 ± 0.7 |
2020 | 5.9 ± 0.4 | 4.4 ± 0.4 | 4.3 ± 0.7 | |
SDFI (mm) | 2019 | 6.6 ± 0.4 | 4.8 ± 0.2 | 4.9 ± 0.7 |
2020 | 6.7 ± 0.2 | 4.8 ± 0.4 | 4.9 ± 0.7 | |
SDLI (mm) | 2019 | 6.8 ± 0.3 | 5.0 ± 0.2 | 4.9 ± 0.7 |
2020 | 6.8 ± 0.1 | 5.0 ± 0.6 | 5.1 ± 0.8 |
Gene ID | Description |
---|---|
Os01g0782200 | Diacylglycerol kinase, catalytic region domain-containing protein. |
Os01g0783800 | Curculin-like (mannose-binding) lectin domain-containing protein. |
Os01g0784900 | Basic helix-loop-helix dimerization region bHLH domain-containing protein. |
Os01g0785400 | GH3 auxin-responsive promoter family protein. |
Os01g0786900 | WD40-like domain-containing protein. |
Os01g0794400 | Thioredoxin domain 2 containing protein. |
Os01g0797600 | Ethylene-responsive element binding factor3 (OsERF3). |
Os01g0799500 | DNA glycosylase family protein. |
Os01g0802700 | Auxin Efflux Carrier family protein. |
Os01g0803900 | Cytochrome P450 family protein. |
Os01g0823100 | Alpha-expansin OsEXPA2. |
Os01g0833100 | NLI interacting factor domain-containing protein. |
Os01g0840300 | Homeobox domain-containing protein. |
Os01g0851100 | Similar to Axi 1 (Auxin-independent growth promoter)-like protein. |
Os01g0853400 | Similar to Coronatine-insensitive protein 1. |
Os01g0854800 | Similar to Cytochrome P450 86A1. |
Os01g0859500 | Similar to Basic leucine zipper protein (Liguleless2). |
Os01g0867100 | Aminoacyl-tRNA synthetase, class Ib domain-containing protein. |
Os01g0868300 | Similar to DNA polymerase alpha catalytic subunit. |
Os01g0876300 | Galactose oxidase, central domain-containing protein. |
Os01g0881900 | Leucine-rich repeat, cysteine-containing containing protein. |
Os01g0883800 | Gibberellin 20 oxidase 2. |
Os01g0898300 | Armadillo-like helical domain-containing protein. |
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Zhao, D.-D.; Son, J.-H.; Farooq, M.; Kim, K.-M. Identification of Candidate Gene for Internode Length in Rice to Enhance Resistance to Lodging Using QTL Analysis. Plants 2021, 10, 1369. https://doi.org/10.3390/plants10071369
Zhao D-D, Son J-H, Farooq M, Kim K-M. Identification of Candidate Gene for Internode Length in Rice to Enhance Resistance to Lodging Using QTL Analysis. Plants. 2021; 10(7):1369. https://doi.org/10.3390/plants10071369
Chicago/Turabian StyleZhao, Dan-Dan, Ju-Hyeong Son, Muhammad Farooq, and Kyung-Min Kim. 2021. "Identification of Candidate Gene for Internode Length in Rice to Enhance Resistance to Lodging Using QTL Analysis" Plants 10, no. 7: 1369. https://doi.org/10.3390/plants10071369