Molecular Breeding to Overcome Biotic Stresses in Soybean: Update
Abstract
:1. Introduction
2. Soybean Diseases and Molecular Developments
2.1. Fungal Diseases
2.1.1. Soybean Rust
2.1.2. Rhizoctonia Root Rot
2.1.3. Charcoal Rot
2.1.4. Fusarium Wilt (Sudden Death Syndrome, SDS)
2.1.5. Purple Seed Stain
2.1.6. Cercospora Leaf Blight
2.1.7. Anthracnose
2.1.8. Brown Stem Rot
2.1.9. Powdery Mildew
2.1.10. Frogeye Leaf Spot
2.1.11. White Mold
2.2. Oomycete Diseases
Phytophthora Rot
2.3. Bacterial Diseases
2.3.1. Bacterial Blight
2.3.2. Bacterial Pustule
2.4. Nematode Diseases
Soybean Cyst Nematode
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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Locus | Cultivar | Interval | Linkage Group/Chromosome | Franking Markers | Reference |
---|---|---|---|---|---|
Soybean rust | |||||
Rpp1 | PI 200492 | ~1 cM | G/18 | Sct_187 Sat_064 Sat_117 Sat_372 Satt191 | [25,26,27,28,40,42,145] |
Rpp2 | PI 230970 | C2/16 | Sat_255 Satt620 Satt529 | [27,29,46,51] | |
Rpp3 | PI 462312 | J/16 | Satt134 Satt460 | [29,30,31,42] | |
Rpp4 | PI 459025B | 1.9 cM 2.8 cM | C4/18 G/18 | Satt288 Satt503, Satt612, Satt288, Satt517, Sat_143, Sct_199, Satt472, Satt191 | [33,146,147,148,149,150] |
Rpp5 | PI 200456 | N/3 | Sat_275 Sat_280 Satt080, Satt125, Satt485, Satt393 | [48,127,128] | |
Rpp6 | PI 567102B | G/18 | Satt324, Satt394 | [35,129,130,131] | |
Rpp7 | PI 605823 | L/19 | GSM0547, GSM0548 | [132] | |
Rpp1b | PI 594538A | 1 cM of Rpp1 and ZM01-1 | G/18 | [36] | |
Rhizoctonia root rot | |||||
PI 442031 | A2 C2 M | Satt177 Satt281 Satt245 | [56] | ||
Fusarium wilt | |||||
7.5 ± 0.5 cM | G | [103] | |||
QTL Rfs1 | J | Satt183 | [108] | ||
Purple seed stain | |||||
Rpss1 | PI 80837 | 6.6 cM 11.6 cM | G/18 | Sat_308 Satt594 | [132] |
Rpss1 | PI 80837 | 44.1 cM 46.8 cM | 18 | Satt115 Satt340 | [133] |
Phytopthora rot | |||||
Rps1a | L88-8470 | 1.2 cM | N/3 | Satt159 | [45,151,214] |
Rps1b | L77-1863 | N/3 | [152,210] | ||
Rps1c | L75-3735 | N/3 | [152,210] | ||
Rps1d | PI 103091 | 5.7 cM 11.5 cM | N/3 | Sat_186 Satt152 | [153,154] |
Rps1k | L77-1794 | N/3 | [155] | ||
Rps2 | L76-1988 | 0.5 cM | J/16 | Sat_393 | [156] |
Rps3 | L83-570 | 0.1 cM | F/13 | Sat_317 | [152,205] |
Rps4 | L85-2352 | 4.3 cM | G/16 | Sat_004 | [157,205] |
Rps5 | L85-3059 | G/16 | [158] | ||
Rps6 | L89-1581 | 0.4 cM 0.3 cM | G/16 | Sct-187 Sat_372 | [159,206] |
Rps7 | L93-3258 | 6.7cM | N/3 | Satt152 | [160,206] |
Rps8 | PI 399073 | 4.0 cM | F/13 | Satt154 | [161,206] |
RpsZS18 | Zaoshu18 | 0.9 cM 0.5 cM | 2 | ZCSSR33 ZCSSR46 | [205] |
Bacterial blight | |||||
Rpg1 | BSR101 | F/13 | K644, B212 | [175] | |
Powdery mildew | |||||
PMD | BRS135 | 7.1 cM 4.6 cM | 16 | GMES6959 Satt_393 | [216] |
PMD | PI 567301B | 3.3 cM | 16 | BARCSOYSSR_16_1291 | [173] |
Rmd | PI 243540 | 9.6 cM 1.3 cM | 16 | Sat_224 BARC-021875-04228 | [172] |
ASR | ZH24 | 16 | Gm16_428 | [169] | |
Soybean cyst nematode | |||||
Rhg4 | PI 438489B | 8 | Satt632 | [217] | |
qSCNPL10 | Pingliang ZDD 11047 | 10 | [218] | ||
rhg1 | Toyomusume | 18 | Satt038, Satt309 | [219] | |
cqSCN10 | PI 567305 | 10 | Satt592, Satt331, and Sat_274 | [220] | |
rhg1 | PI 438489B | 18 | Satt309, Sat_168 | [221] |
Genotype/Line | Disease | Reference |
---|---|---|
SRE-Z-11A, SRE-Z-11B, SRE-Z-15A | Soybean rust | [23] |
PI 441001 | Soybean rust | [24] |
USP 97-08135 | Soybean rust | [25] |
PI 416764, PI 462312, KS 1034 | Soybean rust | [26] |
TGx 1993 4FN, TGx 1995 5FN, PI 594538A | Soybean rust | [27] |
PI 594723, PI 594538A, PI 587880A, PI 230970, PI 459025A | Soybean rust | [28] |
PI 200492 | Soybean rust | [26] |
PI 230970 | Soybean rust | [27] |
PI 462312 | Soybean rust | [30,31] |
PI 459025B | Soybean rust | [33] |
PI 200456 | Soybean rust | [127] |
PI 567102B | Soybean rust | [35] |
PI 605823 | Soybean rust | [132] |
PI 594538A | Soybean rust | [36] |
AGS-129, G00056 | Rhizoctonia root rot | [222] |
PI 442031 | Rhizoctonia root rot | [56] |
PI 417361, PI 504488, PI 88490, PI 346308, PI 416779, PI 417567, PI 381659, PI 417567, PI 407749 | Purple seed stain | [223] |
PI 80837 | Purple seed stain | [132] |
L88-8470 | Phytophthora rot | [151] |
L77-1863, L75-3735, L83-570 | Phytophthora rot | [151] |
PI 103091 | Phytophthora rot | [152,153] |
L77-1794 | Phytophthora rot | [154] |
L76-1988 | Phytophthora rot | [155] |
L85-2352 | Phytophthora rot | [156] |
L85-3059 | Phytophthora rot | [157] |
L89-1581 | Phytophthora rot | [158] |
L93-3258 | Phytophthora rot | [159] |
PI 399073 | Phytophthora rot | [160] |
Zaoshu18 | Phytophthora rot | [203] |
E00003 | Phytophthora rot | [224] |
JS 20-98, JS 20-34, MAUS 162 | Charcoal rot | [225] |
BSR101 | Bacterial blight | [226] |
TGX1987-62F, TGX1990-15F | Bacterial pustule | [227] |
Djakl | Powdery mildew | [165] |
PI 567301B | Powdery mildew | [173] |
PI 243540 | Powdery mildew | [169] |
ZH24 | Powdery mildew | [172] |
PI 438489B | Soybean cyst nematode | [221] |
Pingliang ZDD 11,047 | Soybean cyst nematode | [218] |
Toyomusume | Soybean cyst nematode | [219] |
PI 567305 | Soybean cyst nematode | [220] |
Disease | Approach | Results | Reference |
---|---|---|---|
Soybean cyst nematode | Transcriptomics | 6792 gene transcripts | [249] |
Soybean cyst nematode | Transcriptomics | 6000 variable genes | [250] |
Soybean cyst nematode | Transcriptomics | 3746 DEGs | [251] |
Soybean cyst nematode | Proteomics | 456 differentially expressed proteins | [252] |
Soybean cyst nematode | Metabolomics | 14 specific differential metabolites | [253] |
Asian soybean rust | Proteomics | Distinct protein | [254] |
Asian soybean rust | Proteomics | 70 differentially expressed proteins | [255] |
Asian soybean rust | Metabolomics | Defense secondary metabolite production | [256] |
Phytophthora root rot | Proteomics | 46 differentially expressed proteins | [257] |
Phytophthora root rot | Metabolomics | 90 differentially accumulated metabolites | [216] |
Downy mildew | Transcriptomics | 52 differentially expressed genes | [258] |
Charcoal rot | Transcriptomics | 1219 DEGs | [259] |
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Tripathi, N.; Tripathi, M.K.; Tiwari, S.; Payasi, D.K. Molecular Breeding to Overcome Biotic Stresses in Soybean: Update. Plants 2022, 11, 1967. https://doi.org/10.3390/plants11151967
Tripathi N, Tripathi MK, Tiwari S, Payasi DK. Molecular Breeding to Overcome Biotic Stresses in Soybean: Update. Plants. 2022; 11(15):1967. https://doi.org/10.3390/plants11151967
Chicago/Turabian StyleTripathi, Niraj, Manoj Kumar Tripathi, Sushma Tiwari, and Devendra K. Payasi. 2022. "Molecular Breeding to Overcome Biotic Stresses in Soybean: Update" Plants 11, no. 15: 1967. https://doi.org/10.3390/plants11151967