*2.5. Chloroplast Expression*

RNAseq clustering analyses indicated distinct expression profiles for each *Utricularia amethystina* morphotype. The *psb*A and *rbc*L genes showed much higher levels of expression, followed by *psa*A, *psa*B, *psb*B, *psb*C, and *psb*D, in comparison to other genes in all samples (Figure 7; Supplementary Table S7).

**Figure 7.** Heat map representation of *Utricularia amethystina* cpDNA transcript level. The underscore "\_1" and "\_2" denotes each gene duplicate. The *rps*12 is a duplicated trans-spliced gene, therefore it was analyzed in three parts.
