Search Results (66)

Mating-type identification is fundamental to studies of genetic diversity and genetic breeding in fungi, especially for tetrapolar basidiomycetes, whose mating types are determined by two multiallelic loci, A and B. Traditional mating-type identification of monokaryons relies on manual inference based on hybridization experiments; however, this process is highly complex, time-consuming, and error-prone when applied to large-scale studies. In this study, we isolated 30 monokaryons from protoplasts derived from 15 dikaryons of Flammulina velutipes and developed a software tool, Mating-Type Imputation (MTI), to automatically, rapidly, and accurately infer monokaryon mating types in tetrapolar fungi using a combinatorial pruning traversal algorithm. Using a compatibility matrix derived from 435 hybridization experiments involving these 30 monokaryons, MTI required only a few minutes to accurately infer the mating types of all monokaryons-a task that typically takes several days for manual inference by experienced investigators. Furthermore, MTI enabled us to investigate how false-positive and false-negative interactions influence mating-type inference results. Using a simulated compatibility matrix, we found that MTI could accurately detect potential false negatives in compatibility and successfully infer the true mating-type combinations even in the presence of limited false negatives; conversely, the tool was easily misled by any false positives, resulting in incorrect mating-type combinations. This indicates that false-positive records in hybridization experiments must be strictly eliminated during mating-type inference. In summary, MTI provides an efficient tool for inferring the mating types of tetrapolar fungi, offering technical support for mating-type studies of edible and medicinal fungi, and holds significant theoretical value and broad application potential in the fields of fungal genetic diversity and breeding research. Full article

Flammulina velutipes (Golden Needle Mushroom, F. velutipes) undergoes rapid postharvest deterioration characterized by browning and decay. Drying effectively extends its shelf life and processing window. This study systematically compared the quality attributes and metabolic profiles of F. velutipes subjected to different treatments: fresh F. velutipes as the control group (CK), hot-air drying (HAD), vacuum freeze drying (VFD), and natural air drying (NAD), to elucidate the underlying mechanisms of drying-induced changes. In appearance, VFD samples were uniformly bright with shape well maintained, while HAD and NAD were brownish yellow with significantly reduced volume. In terms of antioxidant capacity, VFD demonstrated the highest level, followed by HAD. A total of 2645 metabolites were identified in dried F. velutipes via metabolomics (positive/negative ion modes), primarily comprising lipids, terpenoids, polyphenols, amino acids, carbohydrates, and steroids. In contrast to VFD, both HAD and NAD showed reduced levels of certain metabolites. VFD treatment yielded the richest profile of differential metabolites in F. velutipes. These results position VFD as the superior method for preserving the quality and metabolic integrity in F. velutipes. This comparative study serves as a practical reference for selecting the most suitable drying method in the F. velutipes industry and enhances our understanding of the metabolic responses to dehydration stress. Full article

5-Fluorouracil (5-FU) remains a cornerstone chemotherapeutic for colorectal cancer, exerting its antitumor effects primarily through disruption of DNA and RNA synthesis and subsequent induction of apoptosis. Nonetheless, its clinical efficacy is often compromised by prominent adverse effects, particularly mucositis. This study examines the potential of brown-strain Flammulina velutipes Singer (FVB) to alleviate 5-FU-associated intestinal damage in a mouse model, offering insights into its possible role in mitigating chemotherapy-induced toxicity. 5-FU treatment significantly exacerbated gastrointestinal toxicity, as evidenced by severe diarrhea, shortened colon length, villus atrophy, and architectural disorganization of the intestine. It also inhibited crypt cell proliferation and induced body weight loss. Mechanistically, 5-FU activated pro-inflammatory, apoptotic, oxidative stress, and EMT pathways and disrupted mucosal tight junctions. Notably, FVB administration mitigated these pathological changes, indicating its protective role against 5-FU-induced intestinal injury. In summary, this investigation presents novel evidence for the protective role of FVB in mitigating 5-FU-induced intestinal mucositis. The results highlight the therapeutic potential of FVB as an adjunct to chemotherapy, potentially reducing treatment-related toxicity and enhancing the clinical care and quality of life of individuals undergoing colorectal cancer therapy. Full article

Frozen surimi, a commonly used raw material in processed aquatic products, is vulnerable to repeated freeze–thaw fluctuations that accelerate protein denaturation and quality loss. In this study, root-derived Flammulina velutipes polysaccharides (FVPs) were extracted from the root-like portion of enoki mushroom, and surimi supplemented with 2% FVP and a blank control (CK) were stored at −18 °C and subjected to a total of five freeze–thaw cycles. The effects of FVP on myofibrillar protein (MP) characteristics and the storage quality of catfish surimi during the freeze–thaw cycles were analyzed. Compared with CK, FVP markedly alleviated the deterioration of water-holding capacity, gel strength, and MP solubility throughout freeze–thaw cycling. It also effectively inhibited the increase in thiobarbituric acid reactive substance (TBARS) values and MP aggregation and delayed the rate of decrease in the storage modulus (G′) and loss modulus (G″) of surimi. Additionally, low-field nuclear magnetic resonance (LF-NMR) further showed that FVP limited the conversion of immobilized water to free water, indicating enhanced water retention under repeated freeze–thaw stress. Fourier transform infrared spectroscopy (FTIR) and scanning electron microscopy (SEM) analyses revealed that FVP stabilized the secondary structure of MPs, making the microstructure of surimi more uniform and compact. The results of this study indicate that FVP exhibited significant cryoprotective effects during freeze–thaw cycles of surimi relative to the untreated control group, providing a theoretical basis for its potential application in aquatic product storage. Full article

Digital phenotyping is increasingly recognized as an essential tool for the quantitative analysis of fungal morphology, particularly in controlled indoor cultivation systems where large numbers of fruiting bodies must be assessed consistently and non-destructively. While YOLOv8-based deep learning approaches have previously been applied in phenotypic analyses of edible mushrooms, the applicability of newer YOLO architectures to fungal phenotyping remains largely unexplored. In this study, we present a controlled-environment digital phenotyping framework for indoor mushroom cultivation and conduct a systematic benchmarking evaluation of YOLOv11 for phenotypic segmentation in comparison with YOLOv8. Using bottle-cultivated Pleurotus ostreatus and Flammulina velutipes as representative edible basidiomycetes, we performed a controlled comparison of YOLOv8-seg and YOLOv11-seg using identical datasets, preprocessing pipelines, and hyperparameter configurations. The results demonstrate that YOLOv11 achieves segmentation performance comparable to that of YOLOv8 across all evaluated metrics (ΔmAP_50–95 < 0.01) while substantially reducing computational complexity, including fewer trainable parameters, lower FLOPs, and decreased gradient load. Validation against caliper-based physical measurements revealed moderate, trait-dependent agreement, whereas inter-model consistency between YOLOv8 and YOLOv11 remained consistently high across diverse morphological and segmentation scenarios. These findings suggest that recent developments in object detection architectures can improve computational efficiency without compromising phenotypic measurement fidelity. More broadly, this study highlights the importance of periodically evaluating emerging detection architectures within biological phenotyping pipelines to ensure scalable, sustainable, and high-throughput fungal phenotyping under controlled-environment cultivation systems. Full article

Background/Objective: Current treatments for peripheral nerve injury (PNI) lack robust evidence to suggest complete recovery; hence, alternative therapeutics offer new opportunities to develop more effective protocols. Mushroom species and their related components are considered potential candidates for peripheral nerve repair, but their specific effects and underlying mechanisms are not fully understood. This systematic review presents the available evidence on the use of mushroom species for PNI therapy, including the bioactive components and mechanisms of action. Methodology: A comprehensive literature search in three databases (PubMed, Scopus, and Google Scholar) led to the synthesis of 11 records published between 2010 and 2024. Qualitative analysis revealed the neuroregenerative potential of four mushrooms: Amanita muscaria (n = 2), Hericium erinaceus (n = 5), Lignosus rhinocerotis (n = 3), and Flammulina velutipes (n = 1), with aqueous extracts as the most common type of ingredients used (n = 4) relative to specific components such as muscimol, polysaccharide, Erinacine S, and nerve-guided conduits (NGCs). Results: These mushroom-derived treatments enhanced the migration of Schwann cells mainly via the FGF-2 signalling and MAPK pathway. In vivo studies also revealed the ability of H. erinaceus, A. muscaria, and L. rhinocerotis to promote peripheral nerve repair and functional recovery, with evidence suggesting the role of neurotrophic factors, anti-apoptotic signalling, and pro-inflammatory substances. H. erinaceus was identified as the most promising for potential clinical applications, given the stronger evidence-based data and its relatively safer components compared to A. muscuria and other mushroom species. Conclusions: Despite presenting the potential use of mushrooms in managing PNIs, the existing approaches need to be subjected to clinical research to accelerate the development of future therapeutics and preventive measures for PNIs. Full article

FVPB1, a novel heteropolysaccharide, was extracted from the Flammulina velutipes fruiting body, and its structure was determined by methylation analysis, nuclear magnetic resonance (NMR) spectroscopy. FVPB1 demonstrated efficacy in inhibiting lipid accumulation in Raw264.7 cells and zebrafish, as well as in reducing weight gain and ameliorating liver injury in high-fat diet-induced mice. High concentration of FVPB1 significantly increased serum ApoA1 levels, while all tested doses (low, medium, and high) reduced serum ApoB levels in mice. Intervention with FVPB1 significantly increased the mRNA expression of Lcat and Cyp7a1 enzymes while markedly reducing the transcriptional level of Hmgcr reductase. Additionally, low concentration of FVPB1 enhanced CYP7A1 protein expression, whereas medium and high concentrations of FVPB1 promoted LCAT protein expression. Medium and high concentrations of FVPB1 significantly enhanced bile acid excretion in mice, with the high dose additionally promoting fecal sterol output. Alpha and beta diversity analyses demonstrated that a high-fat diet induced substantial dysbiosis in the gut microbiota of mice, characterized by reduced microbial diversity and richness. Intervention with FVPB1 significantly modulated the structural composition of the intestinal microbiota in high-fat diet-fed mice. Therefore, FVPB1 exerts lipid-lowering effect in high-fat diet-fed mice by modulating cholesterol metabolism and ameliorating gut microbiota dysbiosis. Full article

Flammulina velutipes (enoki mushroom) is a functional edible mushroom rich in antioxidants, polysaccharides, mycosterols, fiber, and minerals. Accumulating evidence highlights its therapeutic potential across diverse pathological contexts, including boosting cognitive function. However, its role in neuromodulation has not been systematically explored. This study examined the effects of methanolic and ethanolic extracts of F. velutipes on primary hippocampal neurons. Neurons were treated with different extract concentrations, followed by assessments of cell viability, cytoarchitecture, neuritogenesis, maturation, and neuroprotection under oxidative stress. The extracts were further characterized by GC-MS to identify bioactive metabolites, and molecular docking combined with MM-GBSA binding energy analysis was employed to predict potential modulators. Our results demonstrated that the methanolic extract significantly enhanced neurite outgrowth, improved neuronal cytoarchitecture, and promoted survival under oxidative stress, whereas the ethanolic extract produced moderate effects. Mechanistic studies indicated that these neuroprotective and neurodevelopmental benefits were mediated through activation of the NTRK receptors, as validated by both in vitro assays and molecular docking studies. Collectively, these findings suggest that F. velutipes extracts, particularly methanolic fractions, may serve as promising neuromodulatory agents for promoting neuronal development and protecting neurons from oxidative stress. Full article

Edible and medicinal fungi are a general term for large fungi with both edible and medicinal values. As a unique wild edible and medicinal fungus in the Qinghai-Tibet Plateau, the ‘Four Medical Classics’ of the Tang Dynasty has recorded Floccularia luteovirens effects of external application and internal administration on swelling, cold disease, and neck stiffness. At present, it has not been artificially domesticated and has significant development potential. The mushroom is rich in nutrients. The crude protein content of 100 g dried product is 33~39% (up to 38.71 g, about 2.2 times that of Flammulina velutipes). It contains 19 amino acids (including 8 essential amino acids for the human body; tryptophan accounts for 21.55~22.63%). It is also rich in minerals such as selenium, zinc (0.09 g/kg), and iron (0.3 g/kg) and vitamins B1 (0.10 mg), B2 (1.10 mg), C (4.50 mg), and E (6.20 mg). Among the functional active substances, polysaccharides (containing 20.1% β-glucan and 5.7% mannan-oligosaccharide) had antioxidant and immunomodulatory effects, which could alleviate the weight loss of diabetic rats. The IC50 of DPPH free radical scavenging rate of phenolics (ferulic acid, etc.; total phenolic content of 4.21 ± 0.06 mg/g) was 43.85 μg/mL; there was also adenosine, volatile oil, and other components. Pharmacologically, the DPPH free radical scavenging rate of the extract was 65 ± 0.46%, the tumor inhibition rate of the polysaccharide on the tumor-bearing mice was 42.48%, the gastrodin was biocatalyzed (conversion rate 85.2%), and the extracellular polysaccharide could inhibit the color change in shrimp to achieve preservation. This paper reviews its related research progress and provides a reference for its development in the fields of healthy food and biomedicine. Full article

Olive mill wastewater (OMW) is a phenol-rich effluent with high organic load, posing significant environmental disposal challenges in the Mediterranean countries. This study evaluated the bioremediation and valorization potential of OMW by eleven edible and/or medicinal fungal strains (Agrocybe cylindracea, Lentinula edodes, Pleurotus sapidus, Pleurotus sajor-caju, Flammulina velutipes, Ganoderma adspersum, Tuber aestivum and Tuber mesentericum). Firstly, screening for mycelial growth on agar media with commercial glucose and OMW (concentrations from 0 to 50%, v/v) revealed a strain-specific tolerance to phenolic toxicity. Although all tested strains could grow on OMW-based media, G. adspersum, T. mesentericum and T. aestivum presented the highest mycelial growth rates (Kr), exceeding 10 mm/day at elevated OMW levels (50%, v/v). Based on screening outcomes, seven strains were selected for further evaluation under static liquid fermentations in media with 15 and 35% (v/v) OMW. Growth kinetics, substrate consumption, phenolic removal, decolorization capacity, intracellular polysaccharide (IPS) and total lipid content were assessed. Tuber spp. and G. adspersum exhibited the highest tolerance to phenolic compounds, producing biomass exceeding 15 g/L at 35%, v/v OMW. Maximum IPS production reached up to 46.23% (w/w), while lipid content exceeded 15% (w/w) of dry biomass in F. velutipes and T. mesentericum, indicating an oleaginous microorganism-like behavior. Phenolic removal surpassed 80% in most cases, demonstrating efficient enzymatic degradation. Decolorization efficiency varied between strains, but remained above 70% for L. edodes, G. adspersum and F. velutipes. These findings highlight the potential of edible and/or medicinal fungi to simultaneously detoxify OMW and produce biomass and high-value metabolites, supporting a sustainable, low-cost agro-industrial waste management aligning with circular bioeconomy principles. Full article

Over the years, macromycete fungi have been used as a source of food, part of religious rites and rituals, and as a medicinal remedy. Species with strong health-promoting potential include Hericium erinaceus, Cordyceps militaris, Ganoderma lucidum, Pleurotus ostreatus, Flammulina velutipes, and Inonotus obliquus. These species contain many bioactive compounds, including β-glucans, endo- and exogenous amino acids, polyphenols, terpenoids, sterols, B vitamins, minerals, and lovastatin. The level of some biologically active substances is species-specific, e.g., hericenones and erinacines, which have neuroprotective properties, and supporting the production of nerve growth factor in the brain for Hericium erinaceus. Due to their high health-promoting potential, mushrooms and substances isolated from them have found applications in livestock nutrition, improving their welfare and productivity. This phenomenon may be of particular importance in the nutrition of laying hens and broiler chickens, where an increase in pathogen resistance to antibiotics has been observed in recent years. Gallus gallus domesticus is a key farm animal for meat and egg production, so the search for new compounds to support bird health is important for food safety. Studies conducted to date indicate that feed supplementation with mushrooms has a beneficial effect on, among other things, bird weight gain; bone mineralisation; and meat and egg quality, including the lipid profile and protein content and shell thickness, and promotes the development of beneficial microbiota, thereby increasing immunity. Full article

In order to innovatively develop high-activity ACE inhibitory peptides from edible fungi, the conditions for a double-enzymatic hydrolysis preparation of ACE inhibitory peptides from Flammulina velutipes were optimized by response surface methodology. After purification by macroporous resin, gel chromatography, and RP-HPLC, a crude peptide fraction was obtained; its ACE inhibition rate was 85.73 ± 0.95% (IC₅₀ = 0.83 ± 0.09 mg/mL). Based on LC-MS/MS sequencing, the four novel peptides, namely, FAGGP, FDGY, FHPGY, and WADP, were screened by computer analysis and molecular docking technology. The four peptides exhibited a binding energy between −9.4 and −10.3 kcal/mol, and formed hydrogen bonds with Tyr523, Ala354, and Glu384 in the S1 pocket, Tyr520 and His353 in the S2 pocket, and His383 in the HEXXH zinc-coordinating motif of ACE, indicating their good affinity with the ACE active site. The IC₅₀ values of the four ACE inhibitory peptides were 29.17, 91.55, 14.79, and 41.27 μM, respectively, suggesting that these peptides could potentially contribute to the development of new antihypertensive products. Full article

Flammulina velutipes is a widely cultivated edible mushroom in East Asia, recognized for its nutritional benefits and distinct morphology characterized by a long stipe and a compact, hemispherical pileus. The pileus not only plays a critical biological role in reproduction through spore formation but also serves as a key commercial trait influencing consumer preference and market value. Despite its economic importance, pileus development in F. velutipes is highly sensitive to environmental factors, among which carbon dioxide (CO₂) concentration is particularly influential under indoor cultivation conditions. While previous studies have reported that elevated CO₂ levels can inhibit pileus expansion in other mushroom species, the molecular mechanisms by which CO₂ affects pileus growth in F. velutipes remain poorly understood. In this study, we investigated the impact of CO₂ concentration on pileus morphology and gene expression in F. velutipes by cultivating fruiting bodies under two controlled atmospheric conditions: low (1000 ppm) and high (10,000 ppm) CO₂. Morphometric analysis revealed that elevated CO₂ levels significantly suppressed pileus expansion, reducing the average diameter by more than 50% compared to the low CO₂ condition. To elucidate the underlying genetic response, we conducted RNA sequencing and identified 102 differentially expressed genes (DEGs), with 78 being downregulated under elevated CO₂. Functional enrichment analysis highlighted the involvement of cyclin-dependent protein kinase regulatory pathways in this response. Two cyclin genes were found to be significantly downregulated under elevated CO₂ conditions, and their suppression was validated through quantitative real-time PCR. These genes, possessing conserved cyclin_N domains, are implicated in the regulation of the eukaryotic cell cycle, particularly in mitotic growth. These results indicate that CO₂-induced downregulation of cyclin genes may underlie cell cycle arrest, contributing to inhibited pileus development. This study is the first to provide transcriptomic evidence that elevated CO₂ concentrations specifically repress PHO80-like cyclin genes in F. velutipes, revealing a molecular mechanism by which CO₂ stress inhibits pileus development. These findings suggest that elevated CO₂ triggers a morphogenetic checkpoint by repressing PHO80-like cyclins, thereby modulating cell cycle progression during fruiting body development. This study provides the first evidence of such a transcriptional response in edible mushrooms and offers promising molecular targets for breeding CO₂-resilient strains and optimizing commercial cultivation conditions. Full article

Cotton, widely used in the textile industry, has a significant environmental impact due to soil degradation and excessive water consumption during cultivation. As a result, there is a growing need for biodegradable alternatives. This study pioneers the development of decolorized mushroom pulps (DMPs) from edible mushrooms as a sustainable replacement for cotton. Decolorization of fruiting bodies showed the highest reactivity with hydrogen peroxide (H₂O₂). At the same time, mycelium responded more effectively to sodium hypochlorite (NaClO), though this led to structural changes such as melting and twisting. Potassium was detected in fruiting bodies but absent in mycelium, and higher salt content was noted in Agaricus bisporus and Trametes orientalis compared to Pleurotus ostreatus and Flammulina velutipes. Future research should focus on preserving mycelial integrity or developing strains that eliminate the need for decolorization treatments, advancing DMPs as viable biotextile materials. Full article

Flammulina velutipes is an edible mushroom widely cultivated in China. As a by-product of Flammulina velutipes, the roots are rich in high-quality dietary fiber (DF). In order to obtain high-quality soluble dietary fiber (SDF), steam explosion (SE) is used as an effective modification method to improve the extraction rate and avoid the loss of active substances. Mounting evidence shows that SDF alleviates lipid metabolism disorders. However, it is not well understood how the influence of SDF with SE pretreatment could benefit lipid metabolism. In this study, we extracted a soluble dietary fiber from Flammulina velutipes root with an SE treatment, named SE-SDF, using enzymatic assisted extraction. The physicochemical and structural properties of the SE-SDF were investigated, and its hypolipidemic effects were also analyzed using oleic-acid-induced HepG2 cells. In addition, the anti-obesity and hypolipidemic effects of SE-SDF were investigated using a high-fat diet (HFD) mouse model. The results indicate that SE treatment (1.0 MPa, 105 s) increased the SDF content to 8.73 ± 0.23%. The SE-SDF was primarily composed of glucose, galactose, and mannose. In HFD-fed mice, SE-SDF significantly reduced weight gain and improved lipid profiles, while restoring liver function and reducing injury. This work provides an effective method for the processing of fungi waste and adds to its economic value. In future studies, the structural characteristics and the anti-obesity and gut microbiota regulation mechanisms of SE-SDF will be explored in depth, supporting its high-value utilization in healthcare products. Full article