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Keywords = diatom assemblages

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29 pages, 2370 KB  
Article
Marine Algal Response to Cultural Eutrophication in a Tidal System in Argentina
by Anna Fricke, Germán A. Kopprio, Marianela Gastaldi, Maite Narvarte, Daniela Alemany, Ana M. Martínez, Florencia Biancalana, R. David Rodríguez Rendas, Mariano J. Albano, Fernando J. Hidalgo, Oscar Iribarne, Rubén J. Lara and Paulina Martinetto
Coasts 2025, 5(4), 38; https://doi.org/10.3390/coasts5040038 - 6 Oct 2025
Viewed by 385
Abstract
Cultural eutrophication caused by human activity significantly impacts benthic ecosystems. This study investigated how different phytobenthic components—rhodophyte germlings, mesoalgal and macroalgal assemblages, and Ulva cf. lactuca—respond to nutrient enrichment in a tidal channel system in San Antonio Bay, Argentina. Two experiments were [...] Read more.
Cultural eutrophication caused by human activity significantly impacts benthic ecosystems. This study investigated how different phytobenthic components—rhodophyte germlings, mesoalgal and macroalgal assemblages, and Ulva cf. lactuca—respond to nutrient enrichment in a tidal channel system in San Antonio Bay, Argentina. Two experiments were conducted: one in spring examined the interaction between nutrient enrichment (N + P, N + P + Fe) and grazing pressure on early and established algal communities, and the other in autumn assessed nutrient effects on assemblages and Ulva cf. lactuca. Results showed that early successional stages, such as germlings and mesoalgae, responded most strongly to nutrient inputs, while mature macroalgae remained largely unaffected. Significant growth of mesoalgae, with increased pigment concentrations (chlorophyll a, c, and carotenoids), occurred at the eutrophied SAO Channel in spring. Nutrient additions increased rhodophyte germlings but eventually reduced diatom-dominated mesoalgal growth. Mature macroalgae showed site-specific differences but did not respond to fertilization. Grazing effects were evident in treatments with protective cages, suggesting herbivory influences early-stage algal development. Overall, the study emphasizes the importance of the successional stage, grazing pressure, and environmental nutrient history in shaping benthic algal responses to eutrophication, offering key insights into the dynamics of coastal ecosystems under increasing nutrient stress. Full article
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19 pages, 28345 KB  
Article
Fragilaria longwania sp. nov. (Bacillariophyceae), a New Araphid Diatom from Sihailongwan Maar Lake, Northeastern China
by Patrick Rioual, Guoqiang Chu and Jiaqi Liu
Water 2025, 17(19), 2843; https://doi.org/10.3390/w17192843 - 29 Sep 2025
Viewed by 413
Abstract
A new species, Fragilaria longwania sp. nov. from Sihailongwan Maar Lake in northeastern China is described on the basis of observations made using light microscopy (LM) and scanning electron microscopy (SEM) that reveal the distinctive features that separate this new taxon from the [...] Read more.
A new species, Fragilaria longwania sp. nov. from Sihailongwan Maar Lake in northeastern China is described on the basis of observations made using light microscopy (LM) and scanning electron microscopy (SEM) that reveal the distinctive features that separate this new taxon from the other species currently placed in the genus Fragilaria. Fragilaria longwania sp. nov. has relatively short valve length, high stria density, spindle-shaped valves with a swollen, and sometimes deformed central area and capitate valve apices, short spines and weakly developed apical pore fields. This combination of character was found to be unique when the new species was compared with morphologically similar taxa. This species was found in various samples collected from Sihailongwan Maar Lake between 2003 and 2017. The analysis of the diatom assemblages collected in the sediment trap samples allowed an assessment of the cell size variation, seasonal occurrences and ecological requirements of this species. Fragilaria longwania appears to be a planktonic diatom most often associated with the spring season. Full article
(This article belongs to the Special Issue Advances in Diatom Research in Freshwater)
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23 pages, 1706 KB  
Article
Diversity and Ecology of Late Glacial Diatoms of the Eastern Baltic Region
by Anna Rudinskaya and Olga Druzhinina
Biology 2025, 14(9), 1226; https://doi.org/10.3390/biology14091226 - 9 Sep 2025
Viewed by 437
Abstract
The sediments of shallow basins formed on along the coast of the Baltic Ice Lake in the Late Glacial are a valuable source of information for reconstructing the paleoenvironment. A detailed diatom analysis, along with chronological and lithological studies, was performed for the [...] Read more.
The sediments of shallow basins formed on along the coast of the Baltic Ice Lake in the Late Glacial are a valuable source of information for reconstructing the paleoenvironment. A detailed diatom analysis, along with chronological and lithological studies, was performed for the sediments of one of these paleoreservoirs, uncovered in the Kulikovo section (Sambian Peninsula, Kaliningrad Region of the Russian Federation) and dated to 14,000–12,500 calBP. As a result of this study, the essential diversity of Late Glacial diatoms was revealed and 204 species were found. Among them, benthic and epiphytic species belonging to the group of oligohalobous indifferents predominate. The most typical species are Pseudostaurosira brevistriata, Staurosirella ovata, Gyrosigma attenuatum, G. acuminatum, Amphora affinis, Epithemia adnata and Cymbopleura inaequalis. A comparison with available regional data showed that the mass development of pioneer epiphytic diatoms of the Fragilariaceae in the Allerød is common to most of the paleoaquatic ecosystems. A local feature of the Kulikovo paleoreservoir, along with a wide range of ecological diatom groups, is the episode of massive development of Gyrosigma spp., benthic diatoms capable of living in streaming water, in the first half of the Allerød. The Kulikovo diatom assemblages reacted sensitively, not only to the main environmental shifts of the Allerød and Younger Dryas, but also to smaller-scale climatic events, such as Herzensee Oscillation (GI-1b) and changes in hydrological regimes (water level fluctuations, flow rate) caused by local environmental transformations. Full article
(This article belongs to the Section Ecology)
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30 pages, 7008 KB  
Article
Microfossil (Diatoms, Tintinnids, and Testate Amoebae) Assemblages in the Holocene Sediments of the Laptev Sea Shelf off the Yana River as a Proxy for Paleoenvironments
by Maria S. Obrezkova, Lidiya N. Vasilenko, Ira B. Tsoy, Xuefa Shi, Limin Hu, Yaroslav V. Kuzmin, Aleksandr N. Kolesnik, Alexandr V. Alatortsev, Anna A. Mariash, Evgeniy A. Lopatnikov, Irina A. Yurtseva, Darya S. Khmel and Anatolii S. Astakhov
Quaternary 2025, 8(3), 40; https://doi.org/10.3390/quat8030040 - 30 Jul 2025
Viewed by 1065
Abstract
The paper presents the results of a microfossil study of Holocene sediments in the Yana River flow zone in the southeastern part of the Laptev Sea. A rich diatom flora (242 species and intraspecific taxa, of which 177 species are freshwater) was revealed; [...] Read more.
The paper presents the results of a microfossil study of Holocene sediments in the Yana River flow zone in the southeastern part of the Laptev Sea. A rich diatom flora (242 species and intraspecific taxa, of which 177 species are freshwater) was revealed; additionally, five species of marine tintinnids (planktonic ciliates) and 15 species of freshwater testate amoebae (testacean) were discovered for the first time in the sea sediments. Three assemblages of microfossils reflecting the phases of environmental changes during the Holocene transgression are distinguished in the studied sediments of core LV83-32. Assemblage 1 was formed under terrestrial conditions (assemblage of diatoms Eunotia-Pinnularia and testacean Difflugia-Cylindrifflugia-Centropyxis), assemblage 2 in the zone of mixing of sea and fresh waters (assemblages of diatoms Cyclotella striata-Aulacoseira, Thalassiosira hyperborea-Chaetoceros and T. hyperborea-Aulacoseira, testacean Cyclopyxis kahli, tintinnids Tintinnopsis fimbriata), and assemblage 3 reflects modern conditions in the inner shelf of the Laptev Sea under the strong influence of river runoff (assemblage of diatoms T. hyperborea-Aulacoseira-M. arctica and tintinnids Tintinnopsis ventricosoides). Changes in the natural environment in the coastal part of the Laptev Sea shelf during the Holocene, established by microfossil assemblages, are confirmed by geochemical data. Full article
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16 pages, 2024 KB  
Article
Spatiotemporal Dynamics and Driving Factors of Phytoplankton Community Structure in the Liaoning Section of the Liao River Basin in 2010, 2015, and 2020
by Kang Peng, Zhixiong Hu, Rui Pang, Mingyue Li and Li Liu
Water 2025, 17(15), 2182; https://doi.org/10.3390/w17152182 - 22 Jul 2025
Viewed by 515
Abstract
This study aimed to analyse the spatiotemporal evolution of phytoplankton community dynamics and its underlying mechanisms in the Liaoning section of the Liao River Basin in 2010, 2015, and 2020. Phytoplankton species diversity increased significantly, with an increase from three phyla and 31 [...] Read more.
This study aimed to analyse the spatiotemporal evolution of phytoplankton community dynamics and its underlying mechanisms in the Liaoning section of the Liao River Basin in 2010, 2015, and 2020. Phytoplankton species diversity increased significantly, with an increase from three phyla and 31 species in 2010 to six phyla and 74 species in 2020. Concurrent increases in α-diversity indicated continuous improvements in habitat heterogeneity. The community structure shifted from a diatom-dominated assemblage to a green algae–diatom co-dominated configuration, contributing to an enhanced water purification capacity. The upstream agricultural zone (Tieling section) had elevated biomass and low diversity, indicating persistent non-point-source pollution stress. The midstream urban–industrial zone (Shenyang–Anshan section) emerged as a phytoplankton diversity hotspot, likely due to expanding niche availability in response to point-source pollution control. The downstream wetland zone (Panjin section) exhibited significant biomass decline and delayed diversity recovery, shaped by the dual pressures of resource competition and habitat filtering. The driving mechanism of community succession shifted from nutrient-dominated factors (NH3-N, TN) to redox-sensitive factors (DO, pH). These findings support a ‘zoned–graded–staged’ ecological restoration strategy for the Liao River Basin and inform the use of phytoplankton as bioindicators in watershed monitoring networks. Full article
(This article belongs to the Special Issue Water Environment Pollution and Control, 4th Edition)
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19 pages, 4055 KB  
Article
Open-Ocean Carbonate System and Air–Sea CO2 Fluxes Across a NE Atlantic Seamount Complex (Madeira–Tore, August 2024)
by Marta Nogueira and Alexandra D. Silva
Oceans 2025, 6(3), 46; https://doi.org/10.3390/oceans6030046 - 17 Jul 2025
Viewed by 2186
Abstract
This study focused on the carbonate system dynamics and air–sea CO2 fluxes in the open-ocean waters of the Madeira–Tore Seamount Complex during August 2024. Surface water properties revealed pronounced latitudinal gradients in sea surface temperature (21.9–23.1 °C), salinity (36.2–36.7), and dissolved oxygen [...] Read more.
This study focused on the carbonate system dynamics and air–sea CO2 fluxes in the open-ocean waters of the Madeira–Tore Seamount Complex during August 2024. Surface water properties revealed pronounced latitudinal gradients in sea surface temperature (21.9–23.1 °C), salinity (36.2–36.7), and dissolved oxygen (228–251 µmol Kg−1), influenced by mesoscale eddies and topographically driven upwelling. Despite oligotrophic conditions, distinct phytoplankton assemblages were observed, with coccolithophores dominating southern seamounts and open-ocean stations, and green algae and diatoms indicating episodic nutrient input. Surface total alkalinity (TA: 2236–2467 µmol Kg−1), dissolved inorganic carbon (DIC: 2006–2183 µmol Kg−1), and pCO2 (467–515 µatm) showed spatial variability aligned with water mass characteristics and biological activity. All stations exhibited positive air–sea CO2 fluxes (2.8–11.5 mmol m−2 d−1), indicating the region is a CO2 source during summer. Calcite and aragonite saturation states were highest in stratified, warmer waters. Principal Component Analysis highlighted the role of physical mixing, carbonate chemistry, and biological uptake in structuring regional variability. Our findings emphasize and contribute to the complex interplay of physical and biogeochemical drivers in modulating carbon cycling and ecosystem structure across Atlantic seamounts. Full article
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25 pages, 6820 KB  
Article
Coccolithophore Assemblage Dynamics and Emiliania huxleyi Morphological Patterns During Three Sampling Campaigns Between 2017 and 2019 in the South Aegean Sea (Greece, NE Mediterranean)
by Patrick James F. Penales, Elisavet Skampa, Margarita D. Dimiza, Constantine Parinos, Dimitris Velaoras, Alexandra Pavlidou, Elisa Malinverno, Alexandra Gogou and Maria V. Triantaphyllou
Geosciences 2025, 15(7), 268; https://doi.org/10.3390/geosciences15070268 - 11 Jul 2025
Viewed by 1213
Abstract
This study presents the living coccolithophore communities and the morphological variability of Emiliania huxleyi in the South Aegean Sea from three sampling regions during winter-early spring (March 2017, March 2019) and summer (August 2019). Emphasis is given to March 2017 to monitor the [...] Read more.
This study presents the living coccolithophore communities and the morphological variability of Emiliania huxleyi in the South Aegean Sea from three sampling regions during winter-early spring (March 2017, March 2019) and summer (August 2019). Emphasis is given to March 2017 to monitor the variations in coccolithophore assemblages after an exceptionally cold event in December 2016, which resulted in newly produced dense waters that ventilated the Aegean deep basins. The assemblages displayed distinct seasonality with the predominance of E. huxleyi and Syracosphaera molischii during winter-early spring, associated with the water column mixing. By contrast, summer assemblages were featured by holococcolithophores and typical taxa of warm, oligotrophic upper waters. It seems that the phytoplanktonic succession as well as the nutrient supply to the upper euphotic layers were affected by the water column perturbation during the extreme winter of 2016–2017, which led to strong convective mixing and dense water formation. The decreased coccosphere densities during March 2017, accompanied by the notable presence of diatoms, were most probably associated with a prolonged diatom bloom, causing delay in the development of the coccolithophore community and resulting in a nitrogen-limited setting. Emiliania huxleyi morphometry showed the characteristic seasonal calcification trend of the Aegean, with the dominance of smaller coccoliths in the summer and increased coccolith length and width during the cold season. The intense cold conditions and wind-induced mixing during the winter of 2016–2017 possibly increased the absorption of atmospheric CO2 in surface waters, causing increased acidity and the subsequent presence of etched/undercalcified E. huxleyi coccoliths and other taxa, most probably implying in situ calcite dissolution. Full article
(This article belongs to the Section Biogeosciences)
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15 pages, 4580 KB  
Article
Effects of Nutrients on the Phytoplankton Community Structure in Zhanjiang Bay
by Zhen Zeng, Fajin Chen, Qibin Lao and Qingmei Zhu
J. Mar. Sci. Eng. 2025, 13(7), 1202; https://doi.org/10.3390/jmse13071202 - 20 Jun 2025
Cited by 2 | Viewed by 956
Abstract
With rapid economic and social development, eutrophication in coastal areas is currently one of the most severe environmental problems worldwide. However, our understanding of the response of the phytoplankton community structure to the intensification of coastal eutrophication is still relatively limited. Here, seasonal [...] Read more.
With rapid economic and social development, eutrophication in coastal areas is currently one of the most severe environmental problems worldwide. However, our understanding of the response of the phytoplankton community structure to the intensification of coastal eutrophication is still relatively limited. Here, seasonal phytoplankton, environmental factors, and nutrients were investigated in 2009 and 2019 in Zhanjiang Bay, where eutrophication has intensified in recent years, to analyze the variation in nutrient structure and its impact on the phytoplankton community. The results revealed that the DIP and DSI concentrations in 2019 were higher than those in 2009. However, dissolved inorganic nitrogen (DIN) has decreased substantially over the past several decades, which is due mainly to the decrease in anthropogenic nitrogen emissions, the substantial increase in the intrusion of high-salinity seawater, and the high-phosphorus wastewater discharged from urban industries. This resulted in a decrease in phytoplankton cell abundance, phytoplankton composition, and species diversity (H′) in 2019 compared with 2009. In addition, the superior N transport, storage, and response strategy to a low N supply of diatoms, especially Skeletonema and Chaetoceros, might benefit the growth of diatoms under low DIN conditions. The lower DIN/DIP ratio in 2019 favored the growth of diatoms, especially Skeletonema and Chaetoceros, leading diatoms to dominate the phytoplankton assemblage. This study demonstrates how changes in nutrient structure alter the community structure of phytoplankton, providing new insights into deepening our understanding of eco-environmental evolution. Full article
(This article belongs to the Section Chemical Oceanography)
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14 pages, 2403 KB  
Article
Mangrove Habitat Health Assessment in the Sanya River: Multidimensional Analysis of Diatom Communities and Physicochemical Water Properties
by Yiwei Yan, Sijia He, Jiaqi Mai, Ruizhe Xu, Yueqin He, Wenda Zhu, Zirui Peng, Xiangen Wu and Yu Han
Water 2025, 17(12), 1770; https://doi.org/10.3390/w17121770 - 12 Jun 2025
Viewed by 569
Abstract
Mangrove forests are vital ecosystems along tropical coasts, playing crucial roles in water purification and biodiversity conservation. Diatoms, as sensitive ecological indicators, were employed in this study to evaluate the health of the mangrove forests along the Sanya River. The research involved analyzing [...] Read more.
Mangrove forests are vital ecosystems along tropical coasts, playing crucial roles in water purification and biodiversity conservation. Diatoms, as sensitive ecological indicators, were employed in this study to evaluate the health of the mangrove forests along the Sanya River. The research involved analyzing the community structure of planktonic diatoms and water physicochemical properties during spring and winter, as well as carrying out a comprehensive assessment of the ecological health of the region in terms of four seasonal–spatial–environmental–biological indices. A total of 22 genera of planktonic diatoms were identified. In winter, Melosira sp. (34.94%), Skeletonema sp. (25.50%), and Chaetoceros sp. (15%) were dominant, with relative abundances of 34.94%, 25.50%, and 15.00%. In spring, Melosira sp. became the absolutely dominant species, averaging 70.16%. Diatom cell abundance shows both significant seasonal and spatial variation. In winter, it ranged from 0.53 to 17.4 × 109 cells-L−1, peaking in the midstream region, whereas in spring, it ranged from 2.48 to 21.0 × 109 cells-L−1, peaking at the mouth of the estuary. A higher abundance of diatoms in spring strengthens primary productivity and supports the subsequent functioning of the food chain. Diatom indices (Shannon–Wiener index H’, Pielou evenness index J, and Margalef richness index D) indicated an intermediate ecological health level for the Sanya River mangrove forests. Diversity was higher in winter than in spring, with the lowest values recorded in the midstream region. Redundancy analysis (RDA) indicated that T, pH, and PO43− were the primary environmental drivers of diatom community succession. In spring, pH was positively correlated with T and PO43−, respectively. They drove the succession of diatom communities from diverse assemblages in winter to a single dominant species. Full article
(This article belongs to the Section Water Quality and Contamination)
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16 pages, 17053 KB  
Article
Adding to Our Knowledge on the Diatom and Green Algae Biodiversity of Egypt: Some New-to-Science, Poorly Known, and Newly Recorded Species
by Abdullah A. Saber, Mostafa M. El-Sheekh, Olfat M. A. Salem, Zlatko Levkov, Marco Cantonati, Modhi O. Alotaibi and Hani Saber
Water 2025, 17(3), 446; https://doi.org/10.3390/w17030446 - 5 Feb 2025
Viewed by 1417
Abstract
During our research on the diversity of diatoms and green microalgae from Egypt, four new-to-science, newly recorded, and poorly known species were retrieved from different Egyptian habitats. The new benthic diatom species Halamphora shaabanii A.A. Saber, El-Sheekh, Levkov, H. Saber et Cantonati sp. [...] Read more.
During our research on the diversity of diatoms and green microalgae from Egypt, four new-to-science, newly recorded, and poorly known species were retrieved from different Egyptian habitats. The new benthic diatom species Halamphora shaabanii A.A. Saber, El-Sheekh, Levkov, H. Saber et Cantonati sp. nov., which could not be identified using the currently available literature, was described from the high-conductivity, oasis lake Abu Nuss in the El-Farafra Oasis, located in the Western Desert of Egypt, employing both light (LM) and scanning electron (SEM) microscopy observations. A detailed comparison of the biometrically distinctive traits, and ecological preferences, of this new diatom species revealed sufficient differentiations from its morphologically most closely related species: H. atacamana, H. caribaea, H. ectorii, H. gasseae, H. halophila, H. mosensis, H. poianensis, and H. vantushpaensis. Ecologically, Halamphora shaabanii can tolerate relatively high nutrients (N and P) and prefers saline inland environments with NaCl water types. The araphid diatom Pseudostaurosiropsis geocollegarum was observed in the epilithic diatom assemblages of the River Nile Damietta Branch and identified on the basis of LM and SEM. From an ecological standpoint, P. geocollegarum seems to prefer elevated nutrient concentrations (meso-eutraphentic species), reflecting different human influences on the freshwater River Nile Damietta Branch. Based on the available literature, this is the first documentation of this freshwater diatom species for Egypt, and the second record for the African continent. Two green motile microalgae, Chlamydomonas proboscigera and Gonium pectorale, were isolated and identified from the terrestrial biomes of the arid habitat “Wadi El-Atshan” in the Eastern Desert of Egypt. C. proboscigera is reported herein for the first time in the Egyptian algal flora, while G. pectorale is poorly documented in the available literature. In light of our findings, the Egyptian habitats, particularly the isolated desert ecosystems, are interesting biodiversity hotspots and have a richer algal microflora than earlier anticipated. Furthermore, more in-depth taxonomic studies, using a combined polyphasic approach, are needed not only to foster our knowledge of the Egyptian and African algal and cyanobacterial diversity and biogeography, but also to be further used in applied environmental sciences. Full article
(This article belongs to the Special Issue Biodiversity of Freshwater Ecosystems: Monitoring and Conservation)
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26 pages, 4220 KB  
Review
Review of the Fossil Heritage Potential of Shenzhen (Guangdong, China): A Promising Area for Palaeontological Research
by David Marius Kroeck, Yanxin Gong, He Chen, Lan Li and Tong Bao
Geosciences 2024, 14(12), 316; https://doi.org/10.3390/geosciences14120316 - 22 Nov 2024
Viewed by 1485
Abstract
The area of the city of Shenzhen at the Pearl River Delta in Guangdong Province, China, comprises rocks that preserve, with few interruptions, around 1.8 billion years of geological history. However, to date, only few scientific studies within a palaeontological context have been [...] Read more.
The area of the city of Shenzhen at the Pearl River Delta in Guangdong Province, China, comprises rocks that preserve, with few interruptions, around 1.8 billion years of geological history. However, to date, only few scientific studies within a palaeontological context have been conducted on the sediment rocks in Shenzhen. Herein, the fossil record and heritage potential of Shenzhen is reviewed. The few existing previous investigations revealed a rich terrestrial and marine fossil record and show the great potential of this area for future palaeontological research, particularly on the upper Palaeozoic and Mesozoic strata: Carboniferous successions show plant remains and a diverse benthic marine fauna; fossils from Upper Triassic–Middle Jurassic sediment rocks provide important data for terrestrial and marine palaeoecosystems of this time; and the discovery of dinosaur nests in the Upper Cretaceous strata complements the previously known distribution of dinosaurs in South China. Additionally, micropalaeontological and palynological data from the upper Palaeozoic as well as Cenozoic successions in Shenzhen reveal diverse assemblages of foraminifera, ostracods, diatoms, and sporomorphs. Moreover, fossil finds in equivalent rocks in adjacent areas indicate great potential for the units in the Shenzhen area, in which, so far, no fossils have been found. Full article
(This article belongs to the Section Geoheritage, Geoparks and Geotourism)
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28 pages, 6240 KB  
Article
The Contribution of Siliceous Plankton to Vertical Export Flux in the Eastern Mediterranean: A Comparative Study of the North Aegean, Cretan, and Ionian Seas
by Ioanna Nikolopoulou, Elisavet Skampa, Ioanna Varkitzi, Margarita D. Dimiza, Constantine Parinos, Georgia Kambouri, Ioanna Stavrakaki, Alexandra Gogou and Maria V. Triantaphyllou
J. Mar. Sci. Eng. 2024, 12(11), 2084; https://doi.org/10.3390/jmse12112084 - 18 Nov 2024
Cited by 4 | Viewed by 1358
Abstract
This study investigates the intricate dynamics of siliceous plankton species within the open marine regions of the Greek Seas, focusing on their seasonal and spatial variability. For this purpose, vertical export fluxes of diatoms (DtF), silicoflagellates (SF), and radiolaria (RF) were analyzed in [...] Read more.
This study investigates the intricate dynamics of siliceous plankton species within the open marine regions of the Greek Seas, focusing on their seasonal and spatial variability. For this purpose, vertical export fluxes of diatoms (DtF), silicoflagellates (SF), and radiolaria (RF) were analyzed in three sediment trap time series obtained from the North Aegean, Cretan, and Ionian Seas. Special attention was given to diatom assemblages, resulting in the estimation of the DtF community structure and diversity for each studied site. Diatom flux values reached 353.9 × 103 valves m−2 day−1, 77.7 × 103 valves m−2 day−1, and 42.4 × 103 valves m−2 day−1 in the North Aegean, Ionian, and Cretan Seas, respectively. SF maxima were 1309.8 × 103 skeletons m−2 day−1 in the North Aegean Sea, 35.2 × 103 skeletons m−2 day−1 in the Ionian Sea, and 11.9 × 103 skeletons m−2 day−1 in the Cretan Sea (South Aegean Sea). RF values reached 13.9 × 103 radiolaria m−2 day−1, 11.9 × 103 radiolaria m−2 day−1, and 5.4 × 103 radiolaria m−2 day−1 in the North Aegean, Ionian, and Cretan Seas, respectively. The North Aegean Sea exhibited significantly higher mean total fluxes, particularly for diatoms, driven by the north-to-south oligotrophy gradient, which was influenced by riverine inflows and the nutrient-rich Black Sea water. In the Cretan and Ionian Seas, convective mixing and atmospheric deposition, especially during increased rainfall (precipitation) events, were identified as primary drivers for the increased siliceous plankton fluxes recorded in the late winter–spring months. Diatom communities were dominated by Naviculales and Fragilariales; the prevalence of the former in the North Aegean Sea is likely linked to the higher nutrient levels in its upper photic zone, as Naviculales includes species with a high affiliation to nutrient enrichment. Full article
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17 pages, 5121 KB  
Article
The Effects of Cattle Grazing on the Composition of Diatom Assemblages in the Peatland Pools of the Southeastern Alps (Italy, Adamello-Brenta Nature Park)
by Floriana Rossi, Diana M. P. Galassi, Nicola Angeli, Marco Cantonati and Mattia Di Cicco
Land 2024, 13(11), 1780; https://doi.org/10.3390/land13111780 - 30 Oct 2024
Cited by 2 | Viewed by 1179
Abstract
Mires are significant C-sinks and important habitats for biodiversity conservation. Particularly in the Alpine peatlands, grazing and trampling cause mires to degrade, causing changes in plant communities that increase bulk density, peat erosion, and nutrient excesses. We took sixteen samples of epipelic and [...] Read more.
Mires are significant C-sinks and important habitats for biodiversity conservation. Particularly in the Alpine peatlands, grazing and trampling cause mires to degrade, causing changes in plant communities that increase bulk density, peat erosion, and nutrient excesses. We took sixteen samples of epipelic and epiphytic diatoms from mire pools subjected to varying degrees of grazing in the Adamello-Brenta Nature Park (Trento, Italy). We identified >100 diatom species (ca. 70% included in Red List threat categories). We used nMDS to identify groups of diatom species. Their statistical significance was checked with an ANOSIM and, to identify the species that contributed most to the difference between the two groups, a BEST-SIMPER procedure was carried out. The multivariate analyses allowed us to identify significant differences among the most and least grazed sites, and to select the species that contributed most to this distinction. We confirmed that some species were more frequent and abundant in the most grazed sites and behaved as opportunists in the presence of a greater nutrient input, to the detriment of rare and sensitive species, which were more numerous and abundant in the less grazed sites. We provided useful information on grazing effects, underlining the importance of managing and protecting habitats of unique environmental value. Full article
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15 pages, 18138 KB  
Article
Phytoplankton Structure in a Coastal Region of the Eastern Entrance of the Gulf of California during La Niña 2022
by Elizabeth Durán-Campos, David Alberto Salas-de-León, Erik Coria-Monter, María Adela Monreal-Gómez and Benjamín Quiroz-Martínez
Oceans 2024, 5(3), 647-661; https://doi.org/10.3390/oceans5030037 - 10 Sep 2024
Cited by 2 | Viewed by 1950
Abstract
This paper assessed the phytoplankton structure and its relationship with the physical environment in the coastal region off Mazatlán, Mexico, in two seasons of 2022, a year in which a strong La Niña event took place: (1) the warmer (August) and (2) the [...] Read more.
This paper assessed the phytoplankton structure and its relationship with the physical environment in the coastal region off Mazatlán, Mexico, in two seasons of 2022, a year in which a strong La Niña event took place: (1) the warmer (August) and (2) the transitional period to the cold phase (November), based on hydrographic data and samples collected in two systematic scientific expeditions. The results showed clear differences between both seasons. Regarding total abundance, August reached 125,200 cells L−1, while November amounted to 219,900 cells L−1. Regarding species composition, the diatoms Cylindrotheca closterium and Planktoniella sol were dominant in August, while Thalassionema nitzschioides and Tetramphora decussata dominated the assemblages in November. The dinoflagellate Protoperidinium punctulatum was dominant in both seasons. However, very marked differences in its abundance are reported. The differences observed in the species richness and abundance could be attributed to the physical configuration of the water column, particularly the surface temperature, which showed clear changes between both seasons. The results presented here confirmed the high phytoplankton richness (some of them with the potential to generate harmful algal blooms), abundance, and diversity values of the region, suggesting a strong relationship with the physical environment. Full article
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Article
The Diatom Diversity and Ecological Status of a Tufa-Depositing River through eDNA Metabarcoding vs. a Morphological Approach—A Case Study of the Una River (Bosnia and Herzegovina)
by Jasmina Kamberović, Marija Gligora Udovič, Antonija Kulaš, Kálmán Tapolczai, Sandi Orlić, Amela Jusufović, Almina Gajić, Petar Žutinić, Adisa Ahmić and Belma Kalamujić Stroil
Microorganisms 2024, 12(8), 1722; https://doi.org/10.3390/microorganisms12081722 - 21 Aug 2024
Cited by 3 | Viewed by 5435
Abstract
Tufa deposits in karst rivers are unique habitats created by mutual interactions between specific environmental and biotope features and inhabited by diatoms as a highly abundant and diverse algal group. This pilot study aimed to investigate the diversity of diatom communities on tufa [...] Read more.
Tufa deposits in karst rivers are unique habitats created by mutual interactions between specific environmental and biotope features and inhabited by diatoms as a highly abundant and diverse algal group. This pilot study aimed to investigate the diversity of diatom communities on tufa depositing habitats and assess the Una River’s ecological status using a comparative molecular and morphological approach for diatom identification. The 312 base pairs of the rbcL gene were barcoded and analyzed using MiSeq reads and amplicon sequence variants (ASVs) obtained by the DADA2 pipeline. The reference database Diat.barcode v7 was used for taxonomic assignment. The morphological identification of the diatoms was carried out in parallel. In total, the combined dataset revealed 46 taxa identified at genus rank, 125 on the subgenus, and 145 on combined taxonomy rank. The metabarcoding approach mostly leads to a lower number of identified taxa at species rank (58 in molecular vs. 119 in optical inventory), resulting in higher values of beta diversity and heterogeneity in diatom assemblages in samples obtained by morphological approach. Despite the high percentage of taxonomically not assigned diatom ASVs to the species rank, high Shannon diversity index values and a similar number of taxa per locations compared to the morphological approach were obtained. Taxa Achnanthidium minutissimum (Kützing) Czarnecki, Achnanthidium pyrenaicum (Hustedt) H.Kobayasi, Amphora pediculus (Kützing) Grunow, Diatoma vulgaris Bory, Navicula cryptotenella Lange-Bertalot, and Navicula tripunctata (O.F.Müller) Bory were identified at all locations in both inventories. Although limited consistency in the diatom abundances between the two inventory datasets was found, a similar grouping of samples was observed connected to the river’s longitudinal gradient. The data obtained using molecular approach in most sites indicated a mostly lower ecological status (good or moderate) compared to the data obtained from the morphological approach (high, good, and moderate). The potential of environmental DNA (eDNA) diatom metabarcoding for water monitoring and diversity studies is undeniable, but to fully realize the benefits of these methods in the future, it is essential to standardize protocols and expand the reference database for species found in specific habitats, such as tufa deposits. Full article
(This article belongs to the Special Issue Molecular Ecology of Microalgae and Cyanobacteria)
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