Search Results (297)

This study evaluated the individual and combined effects of different bio-inputs—traditional filter cake, filter cake composted with ash, and a microbial inoculant—on the growth and physiological performance of Mucuna pruriens cultivated in soil contaminated with the herbicide tebuthiuron. The experiment followed a completely randomized design with twelve treatments and five evaluation periods (7, 21, 35, 49, and 70 days after sowing). Morphophysiological variables such as plant height, root length, dry biomass, and chlorophyll content were assessed. The results showed that the addition of traditional filter cake promoted significant growth in tebuthiuron-contaminated soil, while, in uncontaminated conditions, both organic residues and the microbial inoculant enhanced plant development, particularly at later stages. Initial phytotoxicity was observed in treatments with organic residues (up to 67% of samples before 35 days), but these effects decreased over time. The microbial inoculant performed better in the absence of organic amendments, suggesting possible antagonistic interactions. Tebuthiuron reduced chlorophyll content by inhibiting photosystem II, but this effect was mitigated by the addition of filter cake. Overall, the findings highlight the potential of integrating Mucuna pruriens cultivation with organic residues and microbial inoculants as an effective phytomanagement strategy for tebuthiuron-affected soils. This approach provides a sustainable model for improving soil health, supporting legume-based rehabilitation, and advancing biological alternatives to conventional remediation practices. Full article

Needle cast (Lophodermium seditiosum Minter, Staley & Millar) in Scots pine (Pinus sylvestris L.) and European ash (Fraxinus excelsior L.) dieback (Hymenoscyphus fraxineus (T. Kowalski) Baral, Queloz & Hosoya) are among the most destructive forest and tree plantation diseases in Europe, threatening not only targeted plant species but also the whole ecosystem. While considerable research effort has focused on microbial antagonists against ash dieback, comparable investigations into needle cast biocontrol remain virtually absent from the literature. Here, isolated microbial antagonists from European ash and Scots pine were evaluated for their efficacy against respective pathogens. In vitro dual-culture assays revealed bacteria with strong inhibitory effects on pathogen growth, as well as multiple plant growth-promoting traits (PGPTs). It was found that bacteria from the genera of Pantoea, Erwinia, Priestia, and Pseudomonas inhibited the growth of H. fraxineus by ≥70%. Most significantly, our investigation revealed that bacteria isolated from Scots pine, belonging to the genera Pseudomonas, Bacillus, and Priestia, inhibited the growth of L. seditiosum by 50% to 80%, representing one of the first reported bacterial antagonisms for this neglected pathogen. All isolates were positive for at least two PGPTs, primarily due to mineralization of organic phosphate and the production of siderophores. The dual functional traits of isolated bacteria highlight their potential application in integrated forest protection strategies, particularly for the previously overlooked L. seditiosum pathosystem. Full article

Root rot in Lycium barbarum, an economically vital crop, is a critical barrier to its sustainable development in China. To elucidate the underlying micro-ecological mechanisms, this study aimed to characterize and compare the rhizosphere microbial communities of healthy and diseased plants from the Qaidam Basin. We employed PacBio full-length amplicon sequencing to analyze bacterial and fungal populations, complemented by network analysis and in vitro antagonistic assays. The results indicated that while microbial species richness was similar, the community structures of healthy and diseased soils were fundamentally different, suggesting that the disease is primarily driven by microbial dysbiosis rather than species loss. Healthy soil was enriched with beneficial Trichoderma, whereas diseased soil was dominated by the pathogen Fusarium, with an abundance 6.7 times higher than that in healthy soil. Network analysis revealed the healthy fungal community was significantly more stable (modularity index: 0.818) than the diseased network (0.4131), where Fusarium occupied a core hub position. Crucially, Trichoderma strains isolated from healthy soil exhibited strong antagonistic activity against Fusarium, with an average inhibition rate exceeding 75%. This study identifies Fusarium as the key pathogen of Goji root rot and native Trichoderma as a potent biocontrol agent, providing a scientific basis for a sustainable, micro-ecological control strategy. Full article

With the increasing global food production year by year, the effective return of crop straw to the field has become an urgent problem to be solved. This study examined the impact of straw decomposition under different return methods on soil ecosystems, focusing on changes in soil biological characteristics. Simulating modern mechanized agricultural practices, an orthogonal experiment was conducted in the haplic Phaeozem region of Northeast China. The factors studied included the amount, length, and burial depth of straw returning. A comprehensive analysis model was built using path analysis, factor analysis, and response surface methodology to investigate the response of soil ecosystem during straw decomposition. This was assessed from four aspects: soil basic nutrients, organic carbon pool, enzyme activity, and microbial community structure. The study found evidence of a strong synergistic relationship between the soil enzyme system and straw decomposition. Notably, during the mid-phase of straw return (60 days), phosphatase and particulate organic carbon (POC) acted as “mirror” antagonistic indicators. Catalase, soil nitrate nitrogen, and POC were identified as key response indicators in the soil ecosystem post-straw return. The appropriate supplementation of nitrogen during the early (0–45 days) and late (75–90 days) stages of straw return was found to facilitate straw decomposition. These findings provide experimental evidence for the return of corn straw in cold haplic Phaeozem regions and offer scientific support for sustainable agricultural practices and national food security. Full article

Bottom sediments play a central role in regulating contaminant dynamics in aquatic systems. They act as both storage sites and reactive zones where contaminants undergo transformation, sequestration, or remobilization. Contaminants primarily enter sediments through anthropogenic activities, including agricultural runoff, industrial effluents, wastewater discharge, urban runoff, and mining operations. This review focuses on six major contaminant groups, including nutrients, heavy metals, pharmaceutical residues, pesticides, polycyclic aromatic hydrocarbons, and microplastics, and examines the mechanistic processes that govern their fate in sediments. The main mechanisms includesorption–desorption on minerals and organic materials, sedimentation, and redox processes that regulate metal immobilization and sulfide formation. The persistence and mobility of contaminants are also influenced by synergistic or antagonistic interactions among pollutants, microbial transformation of organic compounds, and oxidative degradation of microplastics by reactive oxygen species. Contaminants can affect benthic communities by causing toxic effects and oxygen depletion. They also may alter microbial and macrofaunal populations and contribute to bioaccumulation and biomagnification. Ultimately, these insights are important for predicting contaminant behavior and assessing ecological risks, which directly informs the development of effective environmental monitoring programs and sustainable sediment remediation strategies for the long-term protection of aquatic ecosystems. Full article

Studying marine Actinobacteria across ecological niches is essential for discovering novel natural products and understanding microbial interactions. In this study, we investigated the diversity of Actinobacteria associated with five Arctic marine invertebrates using both selective culture-based techniques and culture-independent methods. Additionally, we investigated bacteria–bacteria interactions in an advanced high-throughput co-cultivation assay. We isolated 25 Actinobacteria and classified them into 15 genera, with 53% of the isolates recovered from the sponge Halichondria panicea. In contrast, metabarcoding revealed a high diversity of Actinobacteria, with Chlamys islandica exhibiting the highest uniqueness of Amplicon Sequence Variants (ASVs), as 21.76% of its ASVs were found exclusively in this species. Similarly, not only did Dendrobeania sp. and Tricellaria ternata display notable levels of unique ASVs at 19.91% and 18.06%, respectively, they also shared 17.74% of ASVs, demonstrating a greater similarity in their microbial communities than between more distantly related hosts. A variety of microbial interactions were observed on solid medium, including both cooperative and antagonistic relationships, using the co-cultivation assay. These included inter- and intra-Actinobacteria interactions, as well as interactions with human pathogenic bacteria. The duration of co-cultivation and the physical proximity of bacterial partners influenced the extent of these interactions. Full article

To explore superior biocontrol resources for Rhododendron brown spot disease, five antagonistic fungal strains exhibiting significant inhibitory activity against the pathogen responsible for RBS were isolated from healthy Rhododendron hybridum Ker Gawl leaves. Among them, strain DJW5-2-1 demonstrated the highest inhibition rate, reaching 63.88% against the pathogenic fungus. Based on morphological characteristics and multigene phylogenetic analysis (ITS, β-tubulin, and tef1-α), DJW5-2-1 was identified as Diaporthe phoenicicola (Traverso & Spessa) Udayanga, Crous & K.D. Hyde. Dual culture assays further confirmed its broad-spectrum antifungal activity, with inhibition rates ranging from 39.15% to 72.54% against various phytopathogenic fungi. Biochemical analyses revealed that DJW5-2-1 secretes multiple extracellular enzymes and exhibits plant growth-promoting traits. In both in vitro and potted plant efficacy assays, the biocontrol efficacy of strain DJW5-2-1 against RBS was 49.67% and 50.61%, respectively, indicating that strain DJW5-2-1 exhibits a certain level of control efficacy against RBS. Through pot experiments, we found that strain DJW5-2-1 could promote the growth of rhododendron seedlings and significantly increase growth indicators. Among these indicators, the growth-promoting rates of plant height and stem diameter were 15.27% and 41.27%, respectively. Moreover, DJW5-2-1 contributed to improved host resistance by elevating the activities of key defense-related enzymes, including superoxide dismutase (SOD), peroxidase (POD), catalase (CAT), and polyphenol oxidase (PPO). Taken together, these findings suggest that strain DJW5-2-1 represents a promising microbial agent for the integrated control of RBS and the development of fungal-based biofertilizers. Further investigation is warranted to assess its performance under field conditions and elucidate its underlying mechanisms of action. Full article

Autoimmune gastritis (AIG) is a chronic, organ-specific autoimmune disease characterized by progressive destruction of gastric parietal cells driven by autoreactive CD4⁺ T-cells, epithelial stress pathways, and microbial factors. Parietal cell loss results in achlorhydria, intrinsic factor deficiency, and vitamin B12 malabsorption, ultimately leading to pernicious anemia. Compensatory hypergastrinemia promotes enterochromaffin-like (ECL) cell hyperplasia and contributes to the development of type 1 gastric neuroendocrine neoplasms (gNENs). These clinical consequences are well recognized, yet the cellular and molecular mechanisms driving mucosal atrophy and neoplastic transformation remain incompletely defined. Recent advances highlight the role of endoplasmic reticulum stress, impaired autophagy, innate immune effectors, and dysbiosis in perpetuating inflammation and epithelial injury. The frequent coexistence of AIG with other autoimmune disorders further adds to its clinical complexity. Therapeutic options remain limited, spanning vitamin B12 replacement and endoscopic management to emerging targeted approaches. Netazepide, a gastrin/CCK2 receptor antagonist, is the only agent tested in clinical trials, whereas interventions targeting ER stress, autophagy, immune tolerance, or microbiome composition are still in the preclinical stage. Clarifying these mechanisms is crucial to improve biomarker development, optimize surveillance, and identify targeted therapies to prevent neoplastic transformation. Full article

Conventional plant disease management primarily depends on chemical pesticides. However, with the rising concerns related to human health, environmental sustainability, and the emergence of resistant pathogens, biocontrol agents (BCAs) have gained more attention as eco-friendly alternatives. Among the potential biocontrol agents, yeasts stand out due to their safety, adaptability, and diverse antagonistic mechanisms, ranging from competition and enzyme secretion to volatile compound production and immunity induction. Despite their potential, yeast-based BCAs face limitations in field efficacy, regulation, and an incomplete understanding of their molecular interactions. Most current studies focus on simple, pairwise interactions, overlooking the complexity of agroecosystems, where plants, pathogens, and BCAs interact within broader microbial communities. This review addresses the importance of understanding tripartite interactions among plants, pathogens, and yeasts, supported by integrated transcriptomic and comparative genomic approaches, as well as meticulous observations of phenotypic expressions to uncover strain-specific defense mechanisms and mode of action. By referring to well-studied models like Blumeria graminis f.sp. hordei–Hordeum vulgare–Pseudozyma flocculosa and Trichoderma tripartite systems, we highlight the underexplored potential of yeasts to modulate plant immunity and influence pathogen behavior through complex molecular crosstalk. Bridging these knowledge gaps through integrating proteomic, metabolomic, and transcriptomic analyses, we can better harness yeasts in sustainable and targeted biocontrol strategies. Full article

Pseudomonas aeruginosa is a Gram-negative opportunistic pathogen frequently associated with delayed wound healing, particularly in chronic skin injuries. Its capability to form biofilms, secrete virulence factors, and the faculty to compete with other microorganisms makes it a major challenge in clinical wound management. Recent literature reveals different molecular and cellular mechanisms through which P. aeruginosa disrupts the wound healing process. Findings highlight that it interferes with key phases of healing by modulating host immune responses, degrading extracellular matrix components, and inhibiting keratinocyte migration. Its quorum-sensing systems regulate the expression of critical virulence factors such as exotoxin A, elastases, pyocyanin, and rhamnolipids. Additionally, the production of the biofilm matrix components alginate, and polysaccharides provide protection against host defenses and antibiotics. Interactions with other microorganisms, including antagonistic effects on Staphylococcus epidermidis and synergistic relationships with Staphylococcus aureus, modify the wound microbiota. Promising therapeutic alternatives have shown efficacy in disrupting biofilms and reducing virulence. These insights remark the importance of targeting both P. aeruginosa and its ecological interactions to enhance wound healing outcomes and develop more effective treatments. This review aimed to highlight the pathogenic role of P. aeruginosa and its interactions with other microbial species in the context of skin wound healing. Full article

Tomato (Solanum lycopersicum) is an essential crop worldwide, yet it remains highly vulnerable to severe fungal and bacterial diseases. Traditional chemical-based disease management strategies, aimed at controlling these diseases face increasing scrutiny, due to concerns regarding pathogen resistance, environmental degradation, and potential health risks to humans. This has catalyzed the exploration of sustainable alternatives, with biological control emerging as a viable and promising strategy. Endophytic and epiphytic microorganisms are pivotal as biocontrol agents (BCAs), employing diverse strategies, such as generating antimicrobial substances, enzymes, and volatile organic compounds (VOCs), to suppress pathogen growth and enhance plant health. The efficacy of these antagonistic microorganisms is influenced by the cultivation systems employed, with significant variations observed between soil and hydroponic environments. Factors such as nutrient dynamics and microbial interactions play crucial roles in determining the success of BCAs in these different settings. The advent of metagenomic tools has transformed the landscape of microbial community research, facilitating the identification of functional genes associated with antagonistic activities and the adaptation of these microorganisms to diverse environmental conditions. This review aims to elucidate the potential of endophytic and epiphytic microorganisms in biological control, examining their mechanisms of action, the impact of cultivation systems on their effectiveness, and the application of metagenomics to optimize their use in sustainable disease management strategies for tomato crops. Full article

The undefined microbial ecology of Aconitum carmichaelii root rot in western Yunnan constrains the advancement of eco-friendly control strategies. The identification of potential pathogenic determinants affecting A. carmichaelii growth is imperative for sustainable cultivation and ecosystem integrity. High-throughput sequencing was employed to profile microbial communities across four critical niches, namely rhizosphere soil, tuberous root epidermis, root endosphere, and fibrous roots of healthy and diseased A. carmichaelii. The physicochemical properties of corresponding rhizosphere soils were concurrently analyzed. Putative pathogens were isolated from diseased rhizospheres and tubers through culturing with Koch’s postulates validation, while beneficial microorganisms exhibiting antagonism against pathogens and plant growth-promoting (PGP) traits were isolated from healthy rhizospheres. Highly virulent strains (2F14, FZ1, L23) and their consortia were targeted for suppression. Strain DX3, demonstrating optimal PGP and antagonistic capacity in vitro, was selected for pot trials evaluating growth enhancement and disease control efficacy. Significant disparities in rhizosphere soil properties and bacterial/fungal community structures were evident between healthy and diseased cohorts. Fifteen putative pathogens spanning eight species across four genera were isolated: Fusarium solani, F. avenaceum, Clonostachys rosea, Mucor racemosus, M. irregularis, M. hiemalis, Serratia liquefaciens, and S. marcescens. Concurrently, eight PGP biocontrol strains were identified: Bacillus amyloliquefaciens, B. velezensis, B. subtilis, B. pumilus, and Paenibacillus polymyxa. Pot trials revealed that Bacillus spp. enhanced soil physiochemical properties through nitrogen fixation, phosphate solubilization, potassium mobilization, siderophore production, and cellulose degradation, significantly promoting plant growth. Critically, DX3 inoculation elevated defense-related enzyme activities in A. carmichaelii, enhanced host resistance to root rot, and achieved >50% disease suppression efficacy. This work delineates key pathogenic determinants of Yunnan A. carmichaelii root rot and identifies promising multifunctional microbial resources with dual PGP and biocontrol attributes. Our findings provide novel insights into rhizosphere microbiome-mediated plant health and establish a paradigm for sustainable disease management. Full article

Calcium (Ca) is one of the most important elements determining vegetable yield, but the driving factors that regulate microbial community structure, microbial network system stability, and metabolic pathways along the soil Ca gradient remain unclear. In this work, the relationship between soil physicochemical properties and bacterial and fungal communities was investigated under distinct Ca gradients in well-established Chinese cabbage fields located in Shijiazhuang, Hebei Province, China, with sites named Group 1 (G1), Group 2 (G2), and Group 3 (G3) from lowest to highest along the soil Ca gradient. This study demonstrated that Ca exerts dual effects by modulating pH, electrical conductivity (EC), and soil organic carbon (SOC) dynamics, enhancing bacterial diversity while reinforcing fungal network stability through distinct metabolic adaptations. Bacterial networks showed reduced stability despite increased diversity, perhaps linked to the downregulation of ATP-binding cassette (ABC) transporters. Notably, Fe-Mn oxides counteracted Ca influences through selective nutrient adsorption, creating antagonistic selection pressures. Under calcium stress, both Ca and total P (TP) emerge as key drivers of microbial community restructuring, with fungal networks exhibiting significantly greater stability compared to their bacterial counterparts. This study bridges the knowledge gap in the driving mechanisms of microbial communities under soil Ca stress and provides a theoretical basis for improving vegetable yields, with implications for soil management in Ca-rich ecosystems. Full article

Type 2 diabetes mellitus (T2DM), characterized by insulin resistance and chronic hyperglycemia, markedly increases the incidence and mortality of cardiovascular disease (CVD). Emerging preclinical evidence identifies the cyclic GMP-AMP synthase-stimulator of interferon genes (cGAS–STING) pathway as a critical mediator of diabetic cardiovascular inflammation. Metabolic stressors in T2DM—hyperglycemia, lipotoxicity, and mitochondrial dysfunction—induce leakage of mitochondrial and microbial double-stranded DNA into the cytosol, where it engages cGAS and activates STING. Subsequent TBK1/IRF3 and NF-κB signaling drives low-grade inflammation across cardiomyocytes, endothelial cells, macrophages, and fibroblasts. Genetic deletion of cGAS or STING in high-fat-diet-fed diabetic mice reduces NLRP3 inflammasome-mediated pyroptosis, limits atherosclerotic lesion formation, and preserves cardiac contractile performance. Pharmacological inhibitors, including RU.521 (cGAS antagonist), C-176/H-151 (STING palmitoylation blockers), and the TBK1 inhibitor amlexanox, effectively lower pro-inflammatory cytokines (IL-1β, IL-6, TNF-α) and improve left ventricular ejection fraction in diabetic cardiomyopathy and ischemia–reperfusion injury models. Novel PROTAC degraders targeting cGAS/STING and natural products such as Astragaloside IV and Tanshinone IIA further support the pathway’s druggability. Collectively, these findings position the cGAS–STING axis as a central molecular nexus linking metabolic derangement to cardiovascular pathology in T2DM and underscore its inhibition or targeted degradation as a promising dual cardiometabolic therapeutic strategy. Full article

Plums are climacteric fruits with a short postharvest shelf-life, which makes them highly susceptible to spoilage by moulds and pathogens. Biological control using antagonistic yeasts offers a promising approach to extend shelf-life by inhibiting fungal growth. This study evaluated the effects of two yeast strains, Hanseniaspora uvarum L793 and Metschnikowia pulcherrima L672, on the quality of ‘Larry Ann’ Japanese plums during cold storage. Plums were divided into three batches: two treated by immersion in yeast suspensions (10⁸ cells mL⁻¹) and one untreated control. Quality parameters assessed over 12 weeks at 1 °C included weight loss, decay index, microbial counts, yeast colonisation, skin and flesh colour, texture, pH, titratable acidity, total soluble solids, and ripening index, with evaluations every week. M. pulcherrima L672 showed strong colonisation and persistence on the plum surface, significantly reducing skin damage and mould incidence. In contrast, H. uvarum L793 initially colonised well but declined over time, being replaced by native yeasts such as Aureobasidium spp. Both treatments maintained the physicochemical and organoleptic quality of the plums throughout storage. However, M. pulcherrima L672 was more effective in suppressing fungal growth and preserving fruit integrity. These findings suggest that M. pulcherrima L672 is a promising biocontrol agent for prolonging the shelf-life of Japanese plums during cold storage, maintaining their commercial quality for up to three months. Full article