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17 pages, 763 KB  
Article
Ultrasound Thawing Optimization as a Novel Strategy to Improve Quality of Slowly Frozen Chicken Breast
by Suelen Priscila Santos, Silvino Sasso Robalo, Monica Voss, Bianca Campos Casarin, Bibiana Alves dos Santos, Renius de Oliveira Mello, Juliano Smanioto Barin, Cristiano Ragagnin de Menezes, Paulo Cezar Bastianello Campagnol and Alexandre José Cichoski
Foods 2025, 14(19), 3446; https://doi.org/10.3390/foods14193446 - 8 Oct 2025
Viewed by 574
Abstract
Chicken meat is highly consumed worldwide due to its nutritional value, but its high water content and abundance of polyunsaturated fatty acids make it particularly vulnerable to structural and oxidative damage during freezing and thawing. Slow freezing, in particular, generates large ice crystals [...] Read more.
Chicken meat is highly consumed worldwide due to its nutritional value, but its high water content and abundance of polyunsaturated fatty acids make it particularly vulnerable to structural and oxidative damage during freezing and thawing. Slow freezing, in particular, generates large ice crystals that severely impair water-holding capacity (WHC), increase drip loss, promote color deterioration, and intensify protein and lipid oxidation. Innovative thawing strategies are therefore required to mitigate these quality losses. Ultrasound (US) has been successfully applied to accelerate thawing of fast-frozen meat; however, its potential for slowly frozen chicken breast remains poorly understood. This study aimed to evaluate the effects of US-assisted thawing at two frequencies (25 and 130 kHz), two amplitudes (100% and 60%), and three operating modes (normal, sweep, and degas) on the quality of slowly frozen chicken breast. Conventional thawing required 50 min, yielding WHC of 9.87%, drip loss of 4.65%, free sulfhydryls of 16.38 µmol/g, and ∆E of 3.91. In contrast, the optimized US condition (25 kHz, 100% amplitude, sweep mode) thawed samples in only 18 min, with markedly improved WHC (23.14%), reduced drip loss (3.25%), higher preservation of free sulfhydryls (24.69 µmol/g), and minimal color change (∆E = 3.72). Conversely, less effective parameters (e.g., 130 kHz, 60% amplitude, normal mode) prolonged thawing and compromised quality, with WHC dropping to 9.96% and drip loss increasing to 9.05%. Overall, US reduced thawing time under all conditions, but quality responses depended strongly on the applied parameters. The present findings demonstrate the novelty of optimizing US frequency, amplitude, and mode for thawing slowly frozen chicken breast, highlighting sweep mode at 25 kHz and 100% amplitude as the most effective strategy. Future research should explore its scalability and industrial applicability for poultry processing. Full article
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13 pages, 1585 KB  
Article
Dissemination of Tylosin Residues in the Poultry Environment: Evaluating Litter and Droppings as Sources of Risk
by María Belén Vargas, Ignacia Soto, Francisco Mena, Paula Cortés, Ekaterina Pokrant, Lina Trincado, Matías Maturana, Andrés Flores, Aldo Maddaleno, Lisette Lapierre and Javiera Cornejo
Antibiotics 2025, 14(5), 477; https://doi.org/10.3390/antibiotics14050477 - 8 May 2025
Viewed by 933
Abstract
Introduction: Tylosin, a veterinary antimicrobial belonging to the macrolide family, is commonly used in the poultry industry. Residues generated from its use can be present in the litter and droppings of treated birds. Due to the diverse uses of poultry byproducts, such as [...] Read more.
Introduction: Tylosin, a veterinary antimicrobial belonging to the macrolide family, is commonly used in the poultry industry. Residues generated from its use can be present in the litter and droppings of treated birds. Due to the diverse uses of poultry byproducts, such as fertilizing agricultural soils or incorporation into the diets of other animal species, there is a risk to public health, as the presence of antimicrobial residues favors the development of antimicrobial resistance, which is a global problem. Objective: This study aimed to evaluate the dissemination of tylosin residues from the litter and droppings of treated birds and untreated birds in a controlled broiler environment. Methods: Bird droppings and litter samples were collected and analyzed using HPLC-MS/MS to detect and quantify tylosin residues. Results: The residue concentrations detected in the dropping matrix only exceeded the Limits of Quantification (LOQ = 4 µg kg−1) in the treated group. The litter matrix had statistically significant differences between the study groups. The persistence of tylosin residues in the litter of birds at day 42 was 290.16 µg kg−1 in the treated group (A) and 9.35 µg kg−1 in the adjacent untreated group (B.1). Conclusions: The results indicate that exposure distance influences tylosin residue dissemination. Full article
(This article belongs to the Section Antibiotics Use and Antimicrobial Stewardship)
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29 pages, 13984 KB  
Article
Inter- and Transgenerational Effects of In Ovo Stimulation with Bioactive Compounds on Cecal Tonsils and Cecal Mucosa Transcriptomes in a Chicken Model
by Mariam Ibrahim, Marek Bednarczyk, Katarzyna Stadnicka and Ewa Grochowska
Int. J. Mol. Sci. 2025, 26(3), 1174; https://doi.org/10.3390/ijms26031174 - 29 Jan 2025
Cited by 5 | Viewed by 1530
Abstract
Exploring how early-life nutritional interventions may impact future generations, this study examines the inter- and transgenerational effects of in ovo injection of bioactive compounds on gene expression in the cecal tonsils and cecal mucosa using a chicken model. Synbiotic PoultryStar® (Biomin) and [...] Read more.
Exploring how early-life nutritional interventions may impact future generations, this study examines the inter- and transgenerational effects of in ovo injection of bioactive compounds on gene expression in the cecal tonsils and cecal mucosa using a chicken model. Synbiotic PoultryStar® (Biomin) and choline were injected in ovo on the 12th day of egg incubation. Three experimental groups were established in the generation F1: (1) a control group (C) receiving 0.9% physiological saline (NaCl), (2) a synbiotic group (SYN) receiving 2 mg/embryo, and (3) a combined synbiotic and choline group (SYNCH) receiving 2 mg synbiotic and 0.25 mg choline per embryo. For the generations F2 and F3, the SYN and SYNCH groups were each divided into two subgroups: (A) those injected solely in F1 (SYNs and SYNCHs) and (B) those injected in each generation (SYNr and SYNCHr). At 21 weeks posthatching, cecal tonsil and cecal mucosa samples were collected from F1, F2, and F3 birds for transcriptomic analysis. Gene expression profiling revealed distinct intergenerational and transgenerational patterns in both tissues. In cecal tonsils, a significant transgenerational impact on gene expression was noted in the generation F3, following a drop in F2. In contrast, cecal mucosa showed more gene expression changes in F2, indicating intergenerational effects. While some effects carried into F3, they were less pronounced, except in the SYNs group, which experienced an increase compared to F2. The study highlights that transgenerational effects of epigenetic modifications are dynamic and unpredictable, with effects potentially re-emerging in later generations under certain conditions or fading or intensifying over time. This study provides valuable insights into how epigenetic nutritional stimulation during embryonic development may regulate processes in the cecal tonsils and cecal mucosa across multiple generations. Our findings provide evidence supporting the phenomenon of epigenetic dynamics in a chicken model. Full article
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22 pages, 6489 KB  
Article
Nucleotide and Amino Acid Analyses of Unique Infectious Bronchitis Virus (IBV) Variants from Canadian Poultry Flocks with Drop in Egg Production
by Muhammad Farooq, Ahmed Ali, Mohamed S. H. Hassan and Mohamed Faizal Abdul-Careem
Genes 2024, 15(11), 1480; https://doi.org/10.3390/genes15111480 - 17 Nov 2024
Cited by 3 | Viewed by 2287
Abstract
Background/Objectives: Infectious bronchitis (IB) is a highly infectious avian disease caused by the infectious bronchitis virus (IBV). The disease causes lesions mainly in the respiratory, reproductive, and renal systems and has a significant economic impact on the poultry industry worldwide. Methods: We discovered [...] Read more.
Background/Objectives: Infectious bronchitis (IB) is a highly infectious avian disease caused by the infectious bronchitis virus (IBV). The disease causes lesions mainly in the respiratory, reproductive, and renal systems and has a significant economic impact on the poultry industry worldwide. Methods: We discovered two unique IBV isolates (T-62: PP737794.1 and CL-61: PP783617.1) circulating in Canada and molecularly characterized them. Results: The phylogenetic analysis revealed that the IBV isolates belong to genotype I and fall between lineages 25 and 7. Further analysis of the T-62 IBV isolate indicated that it is a potential recombinant of the Iowa state isolate (IA1162/2020-MW) and that the CL-61 strain of the IBV is also a recombinant IBV with the Connecticut (Conn) vaccine strain as its major parent. The S1 glycoprotein of the CL-61 and T-62 strains of the IBV had 85.7% and 73.2% amino acid (aa) identities respectively compared to the Conn vaccine strain. There were 67 and 129 aa substitutions among the S1 glycoprotein of the CL-61 and T-62 strains of the IBV compared to the Conn vaccine, respectively. Importantly, two and nineteen of these aa variations were in hypervariable regions 1 (HVR1) and HVR3. Finally, the two IBV isolates possessed a higher affinity for the sialic acid ligand compared to the DMV/1639 and Mass/SES IBV strains. Conclusions: Genetic recombination in the IBV results in the continual emergence of new variants, posing challenges for the poultry industry. As indicated by our analyses, live attenuated vaccine strains play a role in the genetic recombination of the IBV, resulting in the emergence of variants. Full article
(This article belongs to the Section Viral Genomics)
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13 pages, 1300 KB  
Article
Culture-Independent Quantitative PCR Detected Mobilized Colistin Resistance Genes (mcr-1, mcr-2, mcr-3, mcr-4, and mcr-5) in Chicken Gut Contents in Bangladesh
by Mamun Al Asad, Md Sarower Hossen Shuvo, Shomaia Yasmin Mitu, Sumia, Md Asief Hossain Zihadi, Ayasha Siddique Shanta, Nahidul Islam, Shamsun Nahar, Brian Godman and Salequl Islam
Sci 2024, 6(4), 76; https://doi.org/10.3390/sci6040076 - 12 Nov 2024
Cited by 1 | Viewed by 3358
Abstract
Inappropriate antimicrobial use in food animal farming propels antimicrobial resistance (AMR) that affects all health domains. Colistin is a ‘Reserve’ antibiotic for human treatment to be conserved for multidrug-resistant pathogens; however, it is being used as an animal growth promoter in many developing [...] Read more.
Inappropriate antimicrobial use in food animal farming propels antimicrobial resistance (AMR) that affects all health domains. Colistin is a ‘Reserve’ antibiotic for human treatment to be conserved for multidrug-resistant pathogens; however, it is being used as an animal growth promoter in many developing countries. The evolution of mobilized colistin resistance (mcr) gene-mediated colistin resistance has been reported to be associated with rampant colistin use. This study investigated the current variants of the mcr gene in chicken gut contents in Bangladesh. A cross-sectional study was designed to assess the mcr-1 to mcr-5 genes in 80 fresh poultry droppings from commercial poultry farms and 40 poultry droppings from household farms. DNA was extracted from each poultry dropping using commercial kits (Qiagen GmbH, Hilden, Germany). Real-time quantitative polymerase chain reaction (RT-qPCR) was employed using the qTOWER3 thermal cycler (Analytik Jena GmbH, Jena, Germany) to analyze the mcr gene variants in the extracted DNA. This study observed that 47.5% (57/120) of the samples exhibited the presence of at least one mcr gene out of the five variants investigated. The individual detection rates of the mcr-1, mcr-2, mcr-3, mcr-4, and mcr-5 genes were 42.5% (51/120), 2.5% (3/120), 1.7% (2/120), 5% (6/120), and 9.2% (11/120), respectively. The co-carriage of two or more genes was found in over 10% (10/57) of the samples. The triple occurrence of mcr genes was identified in three samples with the combination of mcr-1+mcr-2+mcr-4, mcr-1+mcr-3+mcr-5, and mcr-1+mcr-4+mcr-5. Overall, a significantly higher number of mcr genes were identified in the commercial farm chicken droppings compared to the household chicken droppings (p = 0.007). The existence of mcr genes in poultry feces in Bangladesh emphasizes the importance of proper poultry waste disposal and good hygiene practices in poultry livestock and its value chain. The potential impact of environmental ARGs should be considered in national and global policy documents. An integrated and combined approach to the One Health concept should be applied in all domains to understand and control the environment’s role in the evolution and transmission of AMR. Full article
(This article belongs to the Section Biology Research and Life Sciences)
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19 pages, 1138 KB  
Review
Emerging Threats of Highly Pathogenic Avian Influenza A (H5N1) in US Dairy Cattle: Understanding Cross-Species Transmission Dynamics in Mammalian Hosts
by Chithra C. Sreenivasan, Feng Li and Dan Wang
Viruses 2024, 16(11), 1703; https://doi.org/10.3390/v16111703 - 30 Oct 2024
Cited by 19 | Viewed by 6291
Abstract
The rapid geographic spread of the highly pathogenic avian influenza (HPAI) A(H5N1) virus in poultry, wild birds, and other mammalian hosts, including humans, raises significant health concerns globally. The recent emergence of HPAI A(H5N1) in agricultural animals such as cattle and goats indicates [...] Read more.
The rapid geographic spread of the highly pathogenic avian influenza (HPAI) A(H5N1) virus in poultry, wild birds, and other mammalian hosts, including humans, raises significant health concerns globally. The recent emergence of HPAI A(H5N1) in agricultural animals such as cattle and goats indicates the ability of the virus to breach unconventional host interfaces, further expanding the host range. Among the four influenza types—A, B, C, and D, cattle are most susceptible to influenza D infection and serve as a reservoir for this seven-segmented influenza virus. It is generally thought that bovines are not hosts for other types of influenza viruses, including type A. However, this long-standing viewpoint has been challenged by the recent outbreaks of HPAI A(H5N1) in dairy cows in the United States. To date, HPAI A(H5N1) has spread into fourteen states, affecting 299 dairy herds and causing clinical symptoms such as reduced appetite, fever, and a sudden drop in milk production. Infected cows can also transmit the disease through raw milk. This review article describes the current epidemiological landscape of HPAI A(H5N1) in US dairy cows and its interspecies transmission events in other mammalian hosts reported across the globe. The review also discusses the viral determinants of tropism, host range, adaptative mutations of HPAI A(H5N1) in various mammalian hosts with natural and experimental infections, and vaccination strategies. Finally, it summarizes some immediate questions that need to be addressed for a better understanding of the infection biology, transmission, and immune response of HPAI A(H5N1) in bovines. Full article
(This article belongs to the Special Issue Bovine Influenza)
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15 pages, 5910 KB  
Article
Effects of Low-Pressure Systems on Temperature, Humidity, Egg Production, and Feed Utilization Efficiency in Large-Scale Poultry Houses during Summer
by Haiqing Peng, Yang Wang, Zhihao Zhang, Wenxiang Qin, Baoming Li, Weichao Zheng, Peng Yin and Hao Zhu
Animals 2024, 14(17), 2554; https://doi.org/10.3390/ani14172554 - 2 Sep 2024
Cited by 2 | Viewed by 2034
Abstract
Low-pressure systems (LPSs) are among the most critical weather systems, producing excessive precipitation that causes air temperatures to drop and rise considerably. Acute temperature changes directly affect poultry feed intake (FI) and laying performance. To explore the effects of LPSs on hens, the [...] Read more.
Low-pressure systems (LPSs) are among the most critical weather systems, producing excessive precipitation that causes air temperatures to drop and rise considerably. Acute temperature changes directly affect poultry feed intake (FI) and laying performance. To explore the effects of LPSs on hens, the parameters of air temperature, relative humidity, egg production, and feed utilization efficiency were evaluated during different LPSs in three houses. Results indicated that about 2.8 ± 0.7 d, 2.4 ± 0.5 d, and 2.4 ± 0.5 d before the LPS landfall in houses 1, 2, and 3, respectively, the indoor air temperature started to decrease, with the average decreases being 1.7 °C ± 0.4 °C, 2.4 °C ± 0.6 °C, and 1.8 °C ± 0.4 °C, respectively. Significant differences were observed between different LPSs for reducing indoor air temperature (p < 0.05) in the three houses. In house 1, the egg production rates (EPRs) were decreased by 6.6% and 1.1% when LPSs 1 and 2 landed. The average egg weight (AEW) and FI during the LPS landfall were significantly higher than those before the LPS landfall (p < 0.01). Under successive LPSs landfall in the three houses, the EPRs initially reduced by 3.9%, 4.0%, and 0.5%, respectively, but the second LPS event increased the EPRs by 1.8%, 5.3%, and 1.0%, respectively. Furthermore, the LPS landfall increased the feed conversion ratio (FCRe) in the three houses, all above 2.00. In conclusion, LPSs can reduce heat stress, lower the EPRs, and lead to higher FI, FCRe, and AEW. Full article
(This article belongs to the Section Poultry)
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17 pages, 1864 KB  
Article
Antimicrobial Resistance and Phylogenetic Relatedness of Salmonella Serovars in Indigenous Poultry and Their Drinking Water Sources in North Central Nigeria
by Nancy M. Sati, Roderick M. Card, Lisa Barco, Maryam Muhammad, Pam D. Luka, Thomas Chisnall, Idowu O. Fagbamila, Giulia Cento, Nnaemeka E. Nnadi, Clovice Kankya, Innocent B. Rwego, Kokas Ikwap, Lawrence Mugisha, Joseph Erume and Frank N. Mwiine
Microorganisms 2024, 12(8), 1529; https://doi.org/10.3390/microorganisms12081529 - 26 Jul 2024
Cited by 1 | Viewed by 2334
Abstract
There is scant information on Salmonella in indigenous poultry in Nigeria. We investigated the occurrence and characterized Salmonella serovars in indigenous poultry and their drinking water sources to enhance the monitoring of the infection in poultry and to promote public health. We collected [...] Read more.
There is scant information on Salmonella in indigenous poultry in Nigeria. We investigated the occurrence and characterized Salmonella serovars in indigenous poultry and their drinking water sources to enhance the monitoring of the infection in poultry and to promote public health. We collected 1208 samples, poultry droppings (n = 1108), and water (n = 100) across 15 markets in North Central Nigeria. Salmonella spp. were isolated following World Organisation for Animal Health guidelines. Salmonella spp., confirmed through invA gene detection by a polymerase chain reaction assay, were 6.8% (75/1108) droppings and 3% (3/100) water. Susceptibility testing against 13 antimicrobials showed 60.3% (47/78) susceptibility to all the antimicrobials tested while 14.1% (11/78) were multidrug resistant. Serotyping and whole-genome sequencing were carried out on 44 of the isolates, and 23 different serovars were identified. Genomes of serovars Luedinghausen, Laredo, Widemarsh, and Lansing are being documented in Africa for the first time. Twenty (20) antimicrobial resistance (AMR) gene markers encoding for resistance to aminoglycosides, tetracyclines, sulphonamides, quinolones, trimethoprim, penicillins and phenicols were found. Phylogenetic cluster analysis showed close relatedness among isolates from different sources. This study shows both low Salmonella prevalence and AMR, but since uncommon serovars are circulating, continuous monitoring is recommended so as to ensure food safety and poultry health. Full article
(This article belongs to the Section Veterinary Microbiology)
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19 pages, 1470 KB  
Article
Quantitative Risk Assessment of Wind-Supported Transmission of Highly Pathogenic Avian Influenza Virus to Dutch Poultry Farms via Fecal Particles from Infected Wild Birds in the Environment
by Clazien J. de Vos and Armin R. W. Elbers
Pathogens 2024, 13(7), 571; https://doi.org/10.3390/pathogens13070571 - 8 Jul 2024
Cited by 3 | Viewed by 3178
Abstract
A quantitative microbial risk assessment model was developed to estimate the probability that the aerosolization of fecal droppings from wild birds in the vicinity of poultry farms would result in the infection of indoor-housed poultry with highly pathogenic avian influenza virus (HPAIv) in [...] Read more.
A quantitative microbial risk assessment model was developed to estimate the probability that the aerosolization of fecal droppings from wild birds in the vicinity of poultry farms would result in the infection of indoor-housed poultry with highly pathogenic avian influenza virus (HPAIv) in the Netherlands. Model input parameters were sourced from the scientific literature and experimental data. The availability of data was diverse across input parameters, and especially parameters on the aerosolization of fecal droppings, survival of HPAIv and dispersal of aerosols were uncertain. Model results indicated that the daily probability of infection of a single poultry farm is very low, with a median value of 7.5 × 10−9. Accounting for the total number of poultry farms and the length of the bird-flu season, the median overall probability of at least one HPAIv-infected poultry farm during the bird-flu season is 2.2 × 10−3 (approximately once every 455 years). This is an overall estimate, averaged over different farm types, virus strains and wild bird species, and results indicate that uncertainty is relatively high. Based on these model results, we conclude that it is unlikely that this introduction route plays an important role in the occurrence of HPAIv outbreaks in indoor-housed poultry. Full article
(This article belongs to the Special Issue Pathogenesis, Epidemiology, and Control of Animal Influenza Viruses)
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19 pages, 632 KB  
Article
Prevalence, Molecular Detection, and Antimicrobial Resistance of Salmonella Isolates from Poultry Farms across Central Ethiopia: A Cross-Sectional Study in Urban and Peri-Urban Areas
by Hika Waktole, Yonas Ayele, Yamlaksira Ayalkibet, Tsedale Teshome, Tsedal Muluneh, Sisay Ayane, Bizunesh Mideksa Borena, Takele Abayneh, Getaw Deresse, Zerihun Asefa, Tadesse Eguale, Kebede Amenu, Hagos Ashenafi and Gunther Antonissen
Microorganisms 2024, 12(4), 767; https://doi.org/10.3390/microorganisms12040767 - 10 Apr 2024
Cited by 7 | Viewed by 3991
Abstract
A cross-sectional study was conducted to assess the prevalence, molecular detection, and antimicrobial resistance of Salmonella isolates within 162 poultry farms in selected urban and peri-urban areas of central Ethiopia. A total of 1515 samples, including cloacal swabs (n = 763), fresh fecal [...] Read more.
A cross-sectional study was conducted to assess the prevalence, molecular detection, and antimicrobial resistance of Salmonella isolates within 162 poultry farms in selected urban and peri-urban areas of central Ethiopia. A total of 1515 samples, including cloacal swabs (n = 763), fresh fecal droppings (n = 188), litter (n = 188), feed (n = 188), and water (n = 188), were bacteriologically tested. The molecular detection of some culture-positive isolates was performed via polymerase chain reaction (PCR) by targeting spy and sdfl genes for Salmonella Typhimurium and Salmonella Enteritidis, respectively. Risk factors for the occurrence of the bacterial isolates were assessed. Antimicrobial susceptibility testing of PCR-confirmed Salmonella isolates was conducted using 12 antibiotics. In this study, it was observed that 50.6% of the farms were positive for Salmonella. The overall sample-level prevalence of Salmonella was 14.4%. Among the analyzed risk factors, the type of production, breed, and sample type demonstrated a statistically significant association (p < 0.05) with the bacteriological prevalence of Salmonella. The PCR test disclosed that 45.5% (15/33) and 23.3% (10/43) of the isolates were positive for genes of Salmonella Typhimurium and Salmonella Enteritidis, respectively. The antimicrobial susceptibility test disclosed multi-drug resistance to ten of the tested antibiotics that belong to different classes. Substantial isolation of Salmonella Typhimurium and Salmonella Enteritidis in poultry and on poultry farms, along with the existence of multi-drug resistant isolates, poses an alarming risk of zoonotic and food safety issues. Hence, routine flock testing, farm surveillance, biosecurity intervention, stringent antimicrobial use regulations, and policy support for the sector are highly needed. Full article
(This article belongs to the Special Issue Advances in Antibiotic and Drug-Resistance Mechanisms, 2nd Edition)
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23 pages, 2308 KB  
Article
Genetic Diversity of Avian Influenza Viruses Detected in Waterbirds in Northeast Italy Using Two Different Sampling Strategies
by Giulia Graziosi, Caterina Lupini, Federica Gobbo, Bianca Zecchin, Giulia Quaglia, Sara Pedrazzoli, Gabriele Lizzi, Geremia Dosa, Gabriella Martini, Calogero Terregino and Elena Catelli
Animals 2024, 14(7), 1018; https://doi.org/10.3390/ani14071018 - 27 Mar 2024
Cited by 1 | Viewed by 2740
Abstract
Avian influenza viruses (AIVs), which circulate endemically in wild aquatic birds, pose a significant threat to poultry and raise concerns for their zoonotic potential. From August 2021 to April 2022, a multi-site cross-sectional study involving active AIV epidemiological monitoring was conducted in wetlands [...] Read more.
Avian influenza viruses (AIVs), which circulate endemically in wild aquatic birds, pose a significant threat to poultry and raise concerns for their zoonotic potential. From August 2021 to April 2022, a multi-site cross-sectional study involving active AIV epidemiological monitoring was conducted in wetlands of the Emilia-Romagna region, northern Italy, adjacent to densely populated poultry areas. A total of 129 cloacal swab samples (CSs) and 407 avian faecal droppings samples (FDs) were collected, with 7 CSs (5.4%) and 4 FDs (1%) testing positive for the AIV matrix gene through rRT-PCR. A COI-barcoding protocol was applied to recognize the species of origin of AIV-positive FDs. Multiple low-pathogenic AIV subtypes were identified, and five of these were isolated, including an H5N3, an H1N1, and three H9N2 in wild ducks. Following whole-genome sequencing, phylogenetic analyses of the hereby obtained strains showed close genetic relationships with AIVs detected in countries along the Black Sea/Mediterranean migratory flyway. Notably, none of the analyzed gene segments were genetically related to HPAI H5N1 viruses of clade 2.3.4.4b isolated from Italian poultry during the concurrent 2021–2022 epidemic. Overall, the detected AIV genetic diversity emphasizes the necessity for ongoing monitoring in wild hosts using diverse sampling strategies and whole-genome sequencing. Full article
(This article belongs to the Special Issue Interdisciplinary Perspectives on Wildlife Disease Ecology)
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33 pages, 1405 KB  
Review
Coccidiosis in Egg-Laying Hens and Potential Nutritional Strategies to Modulate Performance, Gut Health, and Immune Response
by Milan Kumar Sharma and Woo Kyun Kim
Animals 2024, 14(7), 1015; https://doi.org/10.3390/ani14071015 - 27 Mar 2024
Cited by 8 | Viewed by 7140
Abstract
Avian coccidiosis, despite advancements in management, nutrition, genetics, and immunology, still remains the most impactful disease, imposing substantial economic losses to the poultry industry. Coccidiosis may strike any avian species, and it may be mild to severe, depending on the pathogenicity of Eimeria [...] Read more.
Avian coccidiosis, despite advancements in management, nutrition, genetics, and immunology, still remains the most impactful disease, imposing substantial economic losses to the poultry industry. Coccidiosis may strike any avian species, and it may be mild to severe, depending on the pathogenicity of Eimeria spp. and the number of oocysts ingested by the bird. Unlike broilers, low emphasis has been given to laying hens. Coccidiosis in laying hens damages the gastrointestinal tract and causes physiological changes, including oxidative stress, immunosuppression, and inflammatory changes, leading to reduced feed intake and a drastic drop in egg production. Several countries around the world have large numbers of hens raised in cage-free/free-range facilities, and coccidiosis has already become one of the many problems that producers have to face in the future. However, limited research has been conducted on egg-laying hens, and our understanding of the physiological changes following coccidiosis in hens relies heavily on studies conducted on broilers. The aim of this review is to summarize the effect of coccidiosis in laying hens to an extent and correlate it with the physiological changes that occur in broilers following coccidiosis. Additionally, this review tries to explore the nutritional strategies successfully used in broilers to mitigate the negative effects of coccidiosis in improving the gut health and performance of broilers and if they can be used in laying hens. Full article
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18 pages, 6537 KB  
Article
A Receptor Integrin β1 Promotes Infection of Avian Metapneumovirus Subgroup C by Recognizing a Viral Fusion Protein RSD Motif
by Yongqiu Cui, Siting Li, Weiyin Xu, Yeqiu Li, Jiali Xie, Dedong Wang, Jinshuo Guo, Jianwei Zhou, Xufei Feng, Lei Hou and Jue Liu
Int. J. Mol. Sci. 2024, 25(2), 829; https://doi.org/10.3390/ijms25020829 - 9 Jan 2024
Cited by 4 | Viewed by 2682
Abstract
Avian metapneumovirus subgroup C (aMPV/C) causes respiratory diseases and egg dropping in chickens and turkeys, resulting in severe economic losses to the poultry industry worldwide. Integrin β1 (ITGB1), a transmembrane cell adhesion molecule, is present in various cells and mediates numerous viral infections. [...] Read more.
Avian metapneumovirus subgroup C (aMPV/C) causes respiratory diseases and egg dropping in chickens and turkeys, resulting in severe economic losses to the poultry industry worldwide. Integrin β1 (ITGB1), a transmembrane cell adhesion molecule, is present in various cells and mediates numerous viral infections. Herein, we demonstrate that ITGB1 is essential for aMPV/C infection in cultured DF-1 cells, as evidenced by the inhibition of viral binding by EDTA blockade, Arg-Ser-Asp (RSD) peptide, monoclonal antibody against ITGB1, and ITGB1 short interfering (si) RNA knockdown in cultured DF-1 cells. Simulation of the binding process between the aMPV/C fusion (F) protein and avian-derived ITGB1 using molecular dynamics showed that ITGB1 may be a host factor benefiting aMPV/C attachment or internalization. The transient expression of avian ITGB1-rendered porcine and feline non-permissive cells (DQ cells and CRFK cells, respectively) is susceptible to aMPV/C infection. Kinetic replication of aMPV/C in siRNA-knockdown cells revealed that ITGB1 plays an important role in aMPV/C infection at the early stage (attachment and internalization). aMPV/C was also able to efficiently infect human non-small cell lung cancer (A549) cells. This may be a consequence of the similar structures of both metapneumovirus F protein-specific motifs (RSD for aMPV/C and RGD for human metapneumovirus) recognized by ITGB1. Overexpression of avian-derived ITGB1 and human-derived ITGB1 in A549 cells enhanced aMPV/C infectivity. Taken together, this study demonstrated that ITGB1 acts as an essential receptor for aMPV/C attachment and internalization into host cells, facilitating aMPV/C infection. Full article
(This article belongs to the Special Issue Molecular Research of Viral Infections)
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12 pages, 3324 KB  
Article
Assessing the Effect of Oxytetracycline on the Selection of Resistant Escherichia coli in Treated and Untreated Broiler Chickens
by Ekaterina Pokrant, María Belén Vargas, María José Navarrete, Karina Yévenes, Lina Trincado, Paula Cortés, Aldo Maddaleno, Lisette Lapierre and Javiera Cornejo
Antibiotics 2023, 12(12), 1652; https://doi.org/10.3390/antibiotics12121652 - 23 Nov 2023
Cited by 4 | Viewed by 3794
Abstract
Oxytetracycline (OTC) is administered in the poultry industry for the treatment of digestive and respiratory diseases. The use of OTC may contribute to the selection of resistant bacteria in the gastrointestinal tract of birds or in the environment. To determine the effect of [...] Read more.
Oxytetracycline (OTC) is administered in the poultry industry for the treatment of digestive and respiratory diseases. The use of OTC may contribute to the selection of resistant bacteria in the gastrointestinal tract of birds or in the environment. To determine the effect of OTC on the selection of resistant Escherichia coli strains post-treatment, bacteria were isolated from droppings and litter sampled from untreated and treated birds. Bacterial susceptibility to tetracyclines was determined by the Kirby–Bauer test. A total of 187 resistant isolates were analyzed for the presence of tet(A), (B), (C), (D), (E), and (M) genes by PCR. Fifty-four strains were analyzed by PFGE for subtyping. The proportion of tetracycline-resistant E. coli strains isolated was 42.88%. The susceptibility of the strains was treatment-dependent. A high clonal diversity was observed, with the tet(A) gene being the most prevalent, followed by tet(C). Even at therapeutic doses, there is selection pressure on resistant E. coli strains. The most prevalent resistance genes were tet(A) and tet(C), which could suggest that one of the main mechanisms of resistance of E. coli to tetracyclines is through active efflux pumps. Full article
(This article belongs to the Special Issue Antimicrobial Resistance in Veterinary Science)
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18 pages, 1917 KB  
Article
Towards Early Poultry Health Prediction through Non-Invasive and Computer Vision-Based Dropping Classification
by Arnas Nakrosis, Agne Paulauskaite-Taraseviciene, Vidas Raudonis, Ignas Narusis, Valentas Gruzauskas, Romas Gruzauskas and Ingrida Lagzdinyte-Budnike
Animals 2023, 13(19), 3041; https://doi.org/10.3390/ani13193041 - 27 Sep 2023
Cited by 28 | Viewed by 5410
Abstract
The use of artificial intelligence techniques with advanced computer vision techniques offers great potential for non-invasive health assessments in the poultry industry. Evaluating the condition of poultry by monitoring their droppings can be highly valuable as significant changes in consistency and color can [...] Read more.
The use of artificial intelligence techniques with advanced computer vision techniques offers great potential for non-invasive health assessments in the poultry industry. Evaluating the condition of poultry by monitoring their droppings can be highly valuable as significant changes in consistency and color can be indicators of serious and infectious diseases. While most studies have prioritized the classification of droppings into two categories (normal and abnormal), with some relevant studies dealing with up to five categories, this investigation goes a step further by employing image processing algorithms to categorize droppings into six classes, based on visual information indicating some level of abnormality. To ensure a diverse dataset, data were collected in three different poultry farms in Lithuania by capturing droppings on different types of litter. With the implementation of deep learning, the object detection rate reached 92.41% accuracy. A range of machine learning algorithms, including different deep learning architectures, has been explored and, based on the obtained results, we have proposed a comprehensive solution by combining different models for segmentation and classification purposes. The results revealed that the segmentation task achieved the highest accuracy of 0.88 in terms of the Dice coefficient employing the K-means algorithm. Meanwhile, YOLOv5 demonstrated the highest classification accuracy, achieving an ACC of 91.78%. Full article
(This article belongs to the Special Issue Machine Learning and Statistics Applied to Livestock—Omics Data)
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