Molecular and Clinical Indicators of Cancer Management: Perspective on Cellular Therapy and Precision Medicines

A special issue of Cells (ISSN 2073-4409). This special issue belongs to the section "Cellular Metabolism".

Deadline for manuscript submissions: 30 September 2024 | Viewed by 2682

Special Issue Editors


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Guest Editor
School of Environmental and Life Sciences, University of Newcastle, Callaghan, NSW 2258, Australia
Interests: cancer development; tumor biology; RNA biology; cancer cell metabolism; stem cell biology

E-Mail Website
Guest Editor
School of Medicine, Zhengzhou University, Zhengzhou, China
Interests: cancer development; tumor biology; RNA biology; cancer cell metabolism; stem cell biology; immunotherapy; anticancer drugs

Special Issue Information

Dear Colleagues,

Cancer is a complex disease that develops through the acquisition of several genetic lesions and epigenetic changes, some of which may lead cells a step closer to malignancy. Tumor cells can accumulate hundreds of mutations, and aggressive cancers may be composed of many genetically heterogeneous clones, making their molecular traits difficult to decipher. Thus, it is important to establish the contribution of different genes and pathways that cooperate in providing the tumor cells with specific phenotypical traits. Along with the rapid developments in the diagnosis of genomics and immunology in cancer, therapies targeted to specific molecular alterations or other biologic characteristics in cancer are becoming possible. In addition to genomics, RNA analyzed with transcriptomics and proteins that are detected by proteomics are also important in mediating biological effects. As cellular and molecular mechanisms governing cancer growth have been found to be highly conserved between humans, mice, fish, worms, and flies, it can be anticipated that other innovative experimental models should be developed and used in the future to address particular aspects of malignancy transformation. The complicated reality of malignancy means scientists shift the traditional paradigm of pathological tumor type-centered cancer therapy to treatment with gene-directed and/or immune characteristics (histology-agnostic approaches).

Surprisingly, the routine clinical introduction of cell-based immunotherapy has completely resketched the treatment landscape of cancer management. Genetically modified immune cells, such as CAR-T cells, have produced incredible responses in some solid tumors. These immune cells have enhanced the functional ability and protection from negative signals from immune checkpoints and the hostile tumor microenvironment. However, more therapeutic precision is still required to target tumors accurately. The key to precise medical treatment is to clearly define the individual characteristics and provide corresponding treatments as much as possible. Applying personalized drug combinations to address a higher percentage of aberrations present in individual cancers can help us obtain better outcomes. Compared with genomic markers, proteomic markers have a weak correlation with clinical outcomes, indicating that some technical problems should be solved. The precise treatments with molecular variants and immune classification are still limited. However, some clinical trials showed significantly improved clinical outcomes after precise therapy or immunotherapy compared to random chemotherapy.

Potential topics include, but are not limited to, the following:

  • Tumor classification via genomics, transcriptomics, proteomics, immunology, and other technology; 
  • Personalized therapeutic methods based on tumor classification via genomics, transcriptomics, proteomics, immunology, and other technology; 
  • Research on precise tumor therapy based on other diagnostic theories; 
  • Prediction of drug resistance on gene variation, transcriptional variation, and post-transcriptional molecular modification variation; 
  • Advancements in CAR-T and immunotherapy;
  • Development of anticancer drugs and their underlying mechanisms.

Dr. Rick Francis Thorne
Dr. Ihtisham Bukhari
Guest Editors

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Keywords

  • cancer management
  • immunotherapy
  • precision medicine
  • anticancer drugs
  • cancer biomarkers
  • cancer development

Published Papers (1 paper)

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Research

16 pages, 10305 KiB  
Article
Perturbation Analysis of a Prognostic DDX3X-Mediated Gene Expression Signature Identifies the Antimetastatic Potential of Chaetocin in Hepatocellular Carcinoma
by Tsung-Chieh Lin
Cells 2023, 12(12), 1628; https://doi.org/10.3390/cells12121628 - 14 Jun 2023
Viewed by 1455
Abstract
ATP-dependent RNA helicase DDX3X, also known as DEAD (Asp-Glu-Ala-Asp) Box Polypeptide 3, X-Linked (DDX3X), is critical for RNA metabolism, and emerging evidence implicates ATP-dependent RNA helicase DDX3X’s participation in various cellular processes to modulate cancer progression. In this study, the clinical significance of [...] Read more.
ATP-dependent RNA helicase DDX3X, also known as DEAD (Asp-Glu-Ala-Asp) Box Polypeptide 3, X-Linked (DDX3X), is critical for RNA metabolism, and emerging evidence implicates ATP-dependent RNA helicase DDX3X’s participation in various cellular processes to modulate cancer progression. In this study, the clinical significance of DDX3X was addressed, and DDX3X was identified as a biomarker for poor prognosis. An exploration of transcriptomic data from 373 liver cancer patients from The Cancer Genome Atlas (TCGA) using Ingenuity Pathway Analysis (IPA) suggested an association between DDX3X expression and cancer metastasis. Lentiviral-based silencing of DDX3X in a hepatocellular carcinoma (HCC) cell line resulted in the suppression of cell migration and invasion. The molecular mechanism regarding ATP-dependent RNA helicase DDX3X in liver cancer progression had been addressed in many studies. I focused on the biological application of the DDX3X-mediated gene expression signature in cancer therapeutics. An investigation of the DDX3X-correlated expression signature via the L1000 platform of Connectivity Map (BROAD Institute) first identified a histone methyltransferase inhibitor, chaetocin, as a novel compound for alleviating metastasis in HCC. In this study, the prognostic value of DDX3X and the antimetastatic property of chaetocin are presented to shed light on the development of anti-liver cancer strategies. Full article
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