Incidence and Outcome of Coinfections with SARS-CoV-2 and Rhinovirus
Abstract
1. Introduction
2. Materials and Methods
3. Results
4. Discussion
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
- European Centre for Disease Prevention and Control. COVID-19 Situation Update Worldwide, as of Week 36, Updated 16 September 2021. Available online: https://www.ecdc.europa.eu/en/geographical-distribution-2019-ncov-cases (accessed on 23 September 2021).
- Boschi, C.; Hoang, V.T.; Giraud-Gatineau, A.; Ninove, L.; Lagier, J.-C.; La Scola, B.; Gautret, P.; Raoult, D.; Colson, P. Coinfections with SARS-CoV-2 and other respiratory viruses in Southeastern France: A matter of sampling time. J. Med. Virol. 2021, 93, 1878–1881. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Nowak, M.D.; Sordillo, E.M.; Gitman, M.R.; Mondolfi, A.E.P. Coinfection in SARS-CoV-2 infected patients: Where are influenza virus and rhinovirus/enterovirus? J. Med. Virol. 2020, 92, 1699–1700. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Kim, D.; Quinn, J.; Pinsky, B.; Shah, N.H.; Brown, I. Rates of Co-infection Between SARS-CoV-2 and Other Respiratory Pathogens. JAMA 2020, 323, 2085–2086. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Aghbash, P.S.; Eslami, N.; Shirvaliloo, M.; Baghi, H.B. Viral coinfections in COVID-19. J. Med. Virol. 2021, 93, 5310–5322. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Musuuza, J.S.; Watson, L.; Parmasad, V.; Putman-Buehler, N.; Christensen, L.; Safdar, N. Prevalence and outcomes of co-infection and superinfection with SARS-CoV-2 and other pathogens: A systematic review and meta-analysis. PLoS ONE 2021, 16, e0251170. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Moriyama, M.; Hugentobler, W.J.; Iwasaki, A. Seasonality of Respiratory Viral Infections. Annu. Rev. Virol. 2020, 7, 83–101. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Vandini, S.; Biagi, C.; Fischer, M.; Lanari, M. Impact of Rhinovirus Infections in Children. Viruses 2019, 11, 521. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Hazra, A.; Collison, M.; Pisano, J.; Kumar, M.; Oehler, C.; Ridgway, J.P. Coinfections with SARS-CoV-2 and other respiratory pathogens. Infect. Control. Hosp. Epidemiol. 2020, 41, 1228–1229. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Zhu, X.; Ge, Y.; Wu, T.; Zhao, K.; Chen, Y.; Wu, B.; Zhu, F.; Zhu, B.; Cui, L. Co-infection with respiratory pathogens among COVID-2019 cases. Virus Res. 2020, 285, 198005. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Brotons, P.; Jordan, I.; Bassat, Q.; Henares, D.; de Sevilla, M.F.; Ajanovic, S.; Redin, A.; Fumado, V.; Baro, B.; Claverol, J.; et al. The Positive Rhinovirus/Enterovirus Detection and SARS-CoV-2 Persistence beyond the Acute Infection Phase: An Intra-Household Surveillance Study. Viruses 2021, 13, 1598. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Wee, L.E.; Ko, K.K.K.; Ho, W.Q.; Kwek, G.T.C.; Tan, T.T.; Wijaya, L. Community-acquired viral respiratory infections amongst hospitalized inpatients during a COVID-19 outbreak in Singapore: Co-infection and clinical outcomes. J. Clin. Virol. 2020, 128, 104436. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Peci, A.; Tran, V.; Guthrie, J.; Li, Y.; Nelson, P.; Schwartz, K.; Eshaghi, A.; Buchan, S.; Gubbay, J. Prevalence of Co-Infections with Respiratory Viruses in Individuals Investigated for SARS-CoV-2 in Ontario, Canada. Viruses 2021, 13, 130. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Amrane, S.; Tissot-Dupont, H.; Doudier, B.; Eldin, C.; Hocquart, M.; Mailhe, M.; Dudouet, P.; Ormières, E.; Ailhaud, L.; Parola, P.; et al. Rapid viral diagnosis and ambulatory management of suspected COVID-19 cases presenting at the infectious diseases referral hospital in Marseille, France, -January 31st to March 1st, 2020: A respiratory virus snapshot. Travel Med. Infect. Dis. 2020, 36, 101632. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Dubourg, G.; Baron, S.; Cadoret, F.; Couderc, C.; Fournier, P.-E.; Lagier, J.-C.; Raoult, D. From Culturomics to Clinical Microbiology and Forward. Emerg. Infect. Dis. 2018, 24, 1683–1690. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Cassagne, C.; Normand, A.-C.; Bonzon, L.; L’Ollivier, C.; Gautier, M.; Jeddi, F.; Ranque, S.; Piarroux, R. Routine identification and mixed species detection in 6,192 clinical yeast isolates. Med. Mycol. 2015, 54, 256–265. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Gautier, M.; Ranque, S.; Normand, A.-C.; Becker, P.; Packeu, A.; Cassagne, C.; L’Ollivier, C.; Hendrickx, M.; Piarroux, R. Matrix-assisted laser desorption ionization time-of-flight mass spectrometry: Revolutionizing clinical laboratory diagnosis of mould infections. Clin. Microbiol. Infect. 2014, 20, 1366–1371. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Orozco-Hernández, J.P.; Montoya-Martínez, J.J.; Pacheco-Gallego, M.C.; Céspedes-Roncancio, M.; Porras-Hurtado, G.L. SARS-CoV-2 and rhinovirus/enterovirus co-infection in a critically ill young adult patient in Colombia. Biomedica 2020, 40 (Suppl. S2), 34–43. (In Spanish) [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Heiselman, C.J.; Iovino, N.; Herrera, K.M. A case report of co-infection with rhinovirus and SARS-CoV-2 in pregnancy. Case Rep. Périnat. Med. 2020, 9, 20200028. [Google Scholar] [CrossRef] [Scilit]
- Dee, K.; Goldfarb, D.M.; Haney, J.; Amat, J.A.R.; Herder, V.; Stewart, M.; Szemiel, A.M.; Baguelin, M.; Murcia, P.R. Human Rhinovirus Infection Blocks Severe Acute Respiratory Syndrome Coronavirus 2 Replication Within the Respiratory Epithelium: Implications for COVID-19 Epidemiology. J. Infect. Dis. 2021, 224, 31–38. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Henry, B.M.; Benoit, S.W.; Oliveira, M.H.; Hsieh, W.C.; Benoit, J.; Ballout, R.A.; Plebani, M.; Lippi, G. Laboratory abnormalities in children with mild and severe coronavirus disease 2019 (COVID-19): A pooled analysis and review. Clin. Biochem. 2020, 81, 1–8. [Google Scholar] [CrossRef] [Scilit] [PubMed]

| Epidemiological Features and Viruses | All Patients (n = 6034) | SARS-CoV-2-Negative but Positive for Another Respiratory Virus * (n = 3875) | SARS-CoV-2-Positive without Coinfection (n = 2066) ** | SARS-CoV-2-Positive with Coinfection (n = 93) ** |
|---|---|---|---|---|
| Age (mean ± standard deviation), years | 38.1 ± 25.6 | 35.9 ± 24.9 | 47.2 ± 23.2 | 44.5 ± 22.8 |
| Gender | ||||
| Male | 3249 (53.8) | 1982 (51.1) | 1218 (59.0) | 48 (51.6) |
| Female | 2788 (46.2) | 1893 (48.9) | 848 (41.1) | 45 (48.4) |
| Influenza viruses | ||||
| Influenza A virus | 212 (3.5) | 210 (3.5) | - | 2 (0.1) |
| Influenza B virus | 235 (3.9) | 233 (3.9) | - | 2 (0.1) |
| Parainfluenza viruses | ||||
| Parainfluenza virus 1 | 3 (0.05) | 3 (0.1) | - | 0 (0) |
| Parainfluenza virus 2 | 15 (0.3) | 12 (0.2) | - | 2 (0.1) |
| Parainfluenza virus 3 | 360 (6.0) | 356 (5.9) | - | 4 (0.2) |
| Parainfluenza virus 4 | 41 (0.7) | 38 (0.6) | - | 3 (0.1) |
| Human coronaviruses | ||||
| Coronavirus 229E | 42 (0.7) | 41 (0.7) | - | 1 (0.05) |
| Coronavirus OC43 | 173 (2.9) | 171 (2.8) | - | 2 (0.1) |
| Coronavirus NL63 | 268 (4.4) | 267 (4.4) | - | 1 (0.05) |
| Coronavirus HKU1 | 72 (1.2) | 70 (1.2) | - | 2 (0.1) |
| SARS-CoV-2 | 2159 (37.8) | 0 | 2066 (95.7) | - |
| Respiratory Syncytial virus | 46 (0.7) | 45 (0.7) | - | 1 (0.05) |
| Bocavirus | 95 (1.6) | 92 (1.5) | - | 3 (0.1) |
| Adenovirus | 446 (7.4) | 432 (7.2) | - | 14 (0.6) |
| Metapneumovirus | 116 (1.9) | 113 (1.9) | - | 3 (0.1) |
| Rhinovirus | 2337 (38.7) | 2275 (37.7) | - | 62 (2.9) |
| Enterovirus | 57 (0.9) | 53 (0.9) | - | 4 (0.2) |
| Variables | SARS-CoV-2+Rhinovirus Coinfection (n = 58) | SARS-CoV-2 Monoinfection (n = 58) | Rhinovirus Monoinfection (n = 58) | p-Value |
|---|---|---|---|---|
| Age groups | ||||
| <15 years | 25 (43.1) | 25 (43.1) | 25 (43.1) | 1.0 |
| 15–45 years | 14 (24.1) | 14 (24.1) | 14 (24.1) | |
| 45–65 years | 9 (15.5) | 9 (15.5) | 9 (15.5) | |
| ≥65 years | 10 (17.3) | 10 (17.3) | 10 (17.3) | |
| Gender | ||||
| Male | 33 (56.9) | 33 (56.9) | 33 (56.9) | 1.0 |
| Female | 25 (43.1) | 25 (43.1) | 25 (43.1) |
| SARS-CoV-2 and Rhinovirus Coinfection | SARS-CoV-2 Monoinfection | Rhinovirus Monoinfection | Coinfection versus SARS-CoV-2 Monoinfection | Coinfection versus Rhinovirus Monoinfection | |||
|---|---|---|---|---|---|---|---|
| Univariate Analysis | Multivariate Analysis | Univariate Analysis | Multivariate Analysis | ||||
| n (%) | n (%) | n (%) | OR [95%CI] p-Value | Adjusted OR [95%CI] p-Value | OR [95%CI] p-Value | Adjusted OR [95%CI] p-Value | |
| Comorbidities | |||||||
| Hypertension | 8 (13.8) | 7 (12.1) | 5 (8.6) | 1.17 [0.34–4.08] 0.78 | - | 1.70 [0.45–7.02] 0.38 | - |
| Diabetes | 4 (6.9) | 6 (10.3) | 6 (10.3) | 0.64 [0.13–2.90] 0.51 | - | 0.64 [0.13–2.90] 0.51 | - |
| Cancer | 4 (6.9) | 1 (1.7) | 3 (5.2) | 4.22 [0.40–211.48] 0.17 | 5.26 [0.53–52.00] 0.16 | 1.36 [0.22–9.68] 0.70 | - |
| Chronic respiratory diseases | 12 (20.7) | 7 (12.1) | 12 (20.7) | 1.90 [0.62–6.18] 0.21 | - | 1.00 [0.37–2.72] 1.00 | - |
| Chronic heart diseases | 6 (10.3) | 4 (6.9) | 5 (8.6) | 1.56 [0.35–7.92] 0.51 | - | 1.22 [0.29–5.39] 0.75 | - |
| Obesity | 2 (3.5) | 5 (8.6) | 2 (3.5) | 0.38 [0.03–2.45] 0.24 | - | 1.00 [0.07–14.24] 1.00 | - |
| Clinical symptoms | |||||||
| Fever | 34 (58.6) | 38 (65.5) | 29 (50.0) | 0.75 [0.33–1.69] 0.44 | - | 1.42 [0.64–3.15] 0.35 | - |
| Cough | 36 (62.1) | 18 (31.0) | 27 (46.6) | 3.64 [1.58–8.45] 0.0008 | 3.79 [1.74–8.27] 0.001 | 1.88 [0.84–4.21] 0.09 | 1.59 [0.74–3.44] 0.24 |
| Dyspnea | 26 (44.8) | 21 (36.2) | 14 (24.1) | 1.43 [0.64–3.23] 0.34 | - | 2.55 [1.08–6.14] 0.02 | 2.55 [1.15–5.65] 0.02 |
| Rhinitis | 16 (27.6) | 11 (19.0) | 20 (34.5) | 1.63 [0.63–4.34] 0.27 | - | 0.72 [0.30–1.72] 0.42 | - |
| Anosmia 1,2 | 2 (6.1) | 5 (15.2) | - | 0.36 [0.03–2.46] 0.23 | - | - | - |
| Ageusia 1,2 | 2 (6.1) | 4 (12.1) | - | 0.47 [0.04–3.59] 0.39 | - | - | - |
| Hypoxemia | 19 (32.8) | 20 (34.5) | 14 (24.1) | 0.93 [0.40–2.15] 0.84 | - | 1.53 [0.63–3.77] 0.30 | - |
| Clinical outcomes | |||||||
| Hospitalization | 25 (43.1) | 28 (48.3) | 30 (51.7) | 0.81 [0.37–1.80] 0.58 | - | 0.71 [0.32–1.57] 0.35 | - |
| Transfer to an ICU | 9 (15.5) | 13 (22.4) | 3 (5.2) | 0.64 [0.22–1.79] 0.34 | - | 3.37 [0.77–20.22] 0.07 | 2.42 [0.59–9.96] 0.22 |
| Death | 4 (6.9) | 3 (5.2) | 1 (1.7) | 1.36 [0.22–9.68] 0.70 | - | 4.22 [0.40–211.48] 0.17 | 2.67 [0.24–29.73] 0.42 |
Publisher’s Note: MDPI stays neutral with regard to jurisdictional claims in published maps and institutional affiliations. |
© 2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
Share and Cite
Le Glass, E.; Hoang, V.T.; Boschi, C.; Ninove, L.; Zandotti, C.; Boutin, A.; Bremond, V.; Dubourg, G.; Ranque, S.; Lagier, J.-C.; et al. Incidence and Outcome of Coinfections with SARS-CoV-2 and Rhinovirus. Viruses 2021, 13, 2528. https://doi.org/10.3390/v13122528
Le Glass E, Hoang VT, Boschi C, Ninove L, Zandotti C, Boutin A, Bremond V, Dubourg G, Ranque S, Lagier J-C, et al. Incidence and Outcome of Coinfections with SARS-CoV-2 and Rhinovirus. Viruses. 2021; 13(12):2528. https://doi.org/10.3390/v13122528
Chicago/Turabian StyleLe Glass, Elisabeth, Van Thuan Hoang, Céline Boschi, Laetitia Ninove, Christine Zandotti, Aurélie Boutin, Valérie Bremond, Grégory Dubourg, Stéphane Ranque, Jean-Christophe Lagier, and et al. 2021. "Incidence and Outcome of Coinfections with SARS-CoV-2 and Rhinovirus" Viruses 13, no. 12: 2528. https://doi.org/10.3390/v13122528
APA StyleLe Glass, E., Hoang, V. T., Boschi, C., Ninove, L., Zandotti, C., Boutin, A., Bremond, V., Dubourg, G., Ranque, S., Lagier, J.-C., Million, M., Fournier, P.-E., Drancourt, M., Gautret, P., & Colson, P. (2021). Incidence and Outcome of Coinfections with SARS-CoV-2 and Rhinovirus. Viruses, 13(12), 2528. https://doi.org/10.3390/v13122528

