Design and Application of Novel Nucleic Acid Probe

A special issue of Biosensors (ISSN 2079-6374). This special issue belongs to the section "Biosensors and Healthcare".

Deadline for manuscript submissions: 1 August 2024 | Viewed by 900

Special Issue Editors


E-Mail Website
Guest Editor
Chang Gung Memorial Hospital, Taipei, Taiwan
Interests: nucleic acid probe; label-free probe; DNA nanostructure; aptasensor

E-Mail Website
Guest Editor
Institute of Electro-Optical Engineering, Chang Gung University, Taoyuan, Taiwan
Interests: nucleic acid probe; label-free probe; DNA nanostructure; aptasensor

Special Issue Information

Dear Colleagues,

Nucleic acid-based biosensors are becoming popular in food, environmental, and healthcare applications, as nucleic acids are relatively easy to design and have a variety of different interactions with their targets. The success of nucleic acid-based biosensor is highly dependent on the design of nucleic acid probes. This Special Issue welcomes papers that analyze novel nucleic acid probe design and application. The probes can have intra-molecular or inter-molecular interaction with sequence-specific Watson–Crick hydrogen bonding or Hoogsteen hydrogen bonding, or non-specific hydrophobic interaction. The probes can be labeled or label free. The probes can either reveal a detectable signal or trigger a downstream reaction or conformational switch. Therefore, probes that have or can interact with their targets to form structures, such as triple helix, G-quadruplex, i-motif, aptamer, or self-assembled nanostructure, are within the scope. We welcome the application of these novel probes in the detection of different targets, including other nucleic acid sequences, proteins, small molecules, extracellular vesicles, or even cells.

Dr. Chiuan-Chian Chiou
Prof. Dr. Kou-Chen Liu
Guest Editors

Manuscript Submission Information

Manuscripts should be submitted online at www.mdpi.com by registering and logging in to this website. Once you are registered, click here to go to the submission form. Manuscripts can be submitted until the deadline. All submissions that pass pre-check are peer-reviewed. Accepted papers will be published continuously in the journal (as soon as accepted) and will be listed together on the special issue website. Research articles, review articles as well as short communications are invited. For planned papers, a title and short abstract (about 100 words) can be sent to the Editorial Office for announcement on this website.

Submitted manuscripts should not have been published previously, nor be under consideration for publication elsewhere (except conference proceedings papers). All manuscripts are thoroughly refereed through a single-blind peer-review process. A guide for authors and other relevant information for submission of manuscripts is available on the Instructions for Authors page. Biosensors is an international peer-reviewed open access monthly journal published by MDPI.

Please visit the Instructions for Authors page before submitting a manuscript. The Article Processing Charge (APC) for publication in this open access journal is 2700 CHF (Swiss Francs). Submitted papers should be well formatted and use good English. Authors may use MDPI's English editing service prior to publication or during author revisions.

Keywords

  • nucleic acid probe
  • label-free probe
  • triplex forming oligonucleotides (TFOs)
  • G-quadruplex
  • i-motif
  • aptamer/aptasensor
  • DNA nanostructure
  • hoogsteen hydrogen bonding
  • conformational switch

Published Papers (1 paper)

Order results
Result details
Select all
Export citation of selected articles as:

Research

0 pages, 2335 KiB  
Article
Introducing Triplex Forming Oligonucleotide into Loop-Mediated Isothermal Amplification for Developing a Lateral Flow Biosensor for Streptococci Detection
by Wei Chang, Po-Hao Chou, Cai-Tong Wu, Jheng-Da Song, Kun-Nan Tsai and Chiuan-Chian Chiou
Biosensors 2024, 14(5), 257; https://doi.org/10.3390/bios14050257 - 17 May 2024
Viewed by 582
Abstract
Loop-mediated isothermal amplification (LAMP) technology is extensively utilized for the detection of infectious diseases owing to its rapid processing and high sensitivity. Nevertheless, conventional LAMP signaling methods frequently suffer from a lack of sequence specificity. This study integrates a triplex-forming oligonucleotide (TFO) probe [...] Read more.
Loop-mediated isothermal amplification (LAMP) technology is extensively utilized for the detection of infectious diseases owing to its rapid processing and high sensitivity. Nevertheless, conventional LAMP signaling methods frequently suffer from a lack of sequence specificity. This study integrates a triplex-forming oligonucleotide (TFO) probe into the LAMP process to enhance sequence specificity. This TFO-LAMP technique was applied for the detection of Group B Streptococcus (GBS). The TFO probe is designed to recognize a specific DNA sequence, termed the TFO targeting sequence (TTS), within the amplified product, facilitating detection via fluorescent instrumentation or lateral flow biosensors. A screening method was developed to identify TFO sequences with high affinity to integrate TFO into LAMP, subsequently incorporating a selected TTS into an LAMP primer. In the TFO-LAMP assay, a FAM-labeled TFO is added to target the TTS. This TFO can be captured by an anti-FAM antibody on lateral flow test strips, thus creating a nucleic acid testing biosensor. The efficacy of the TFO-LAMP assay was confirmed through experiments with specimens spiked with varying concentrations of GBS, demonstrating 85% sensitivity at 300 copies and 100% sensitivity at 30,000 copies. In conclusion, this study has successfully developed a TFO-LAMP technology that offers applicability in lateral flow biosensors and potentially other biosensor platforms. Full article
(This article belongs to the Special Issue Design and Application of Novel Nucleic Acid Probe)
Show Figures

Figure 1

Back to TopTop