Machine Learning Sensors for Diagnosis of COVID-19 Disease Using Routine Blood Values for Internet of Things Application
Abstract
:1. Introduction
2. Related Studies
3. Data and Methods
3.1. Characteristic of Participants, Workflow and Datasets
3.2. Correlation Analysis of Features
3.3. Machine Learning Methods, Hyperparameters, Accuracy Estimation
3.4. Implementing LogNNet on an Arduino Board
3.4.1. LogNNet Program for Arduino Board
- Function “Fun_activ”—activation function, lines 10–12;
- Procedure “Reservoir”—calculation of coefficients of reservoir matrix W by congruent generator formula, multiplication of arrays and calculation of neurons in layer Sh, lines 14–28;
- Procedure “Hidden_Layer”—calculation of neurons in the hidden layer Sh2, lines 30–39;
- Function “Output_Layer_Layer”—calculation of the output layer Sout, lines 41–54;
- The “void loop” block is an executable loop, lines 61–77;
- “void setup” block—initialization block, lines 61–77.
3.4.2. Test Scheme
4. Results
4.1. Correlation Analysis of Dataset SARS-CoV-2-RBV1
4.2. Classification Results for Dataset SARS-CoV-2-RBV1
4.2.1. Investigation of the Effectiveness of the HGB Model Operating on One Feature
4.2.2. Investigation of the Effectiveness of the HGB Model Operating on Two Features
4.2.3. The Study of the Most Significant Combination of Three Features of the HGB Model
4.2.4. The Study of the Most Significant Combination of 11 Features of the HGB Model
4.3. LogNNet Implementation on Arduino for Edge Computing
4.4. Machine Learning COVID-19 Sensor for IoT
5. Discussion
5.1. Analysis of Results from a Medical Perspective
5.2. Analysis of Results from IoT Perspective
6. Limitations of the Study
7. Conclusions and Future Studies
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
Correction Statement
Appendix A
Algorithm A1. LogNNet neural network executable code on Arduino Nano IoT | |||
1 | #include “LogNNet.h” | 40 | |
2 | 41 | byte Output_Layer() { | |
3 | float Y[S+1]; | 42 | float Sout[N+1]; byte digit = 0; |
4 | float Sh[P+1]; | 43 | for (int j = 0; j <= N; j++) { |
5 | float Sh2[M+1]; | 44 | Sout[j] = 0; |
6 | 45 | for (int i = 0; i <= M; i++) | |
7 | int i = 0; | 46 | Sout[j] = Sout[j] + Sh2[i] * |
8 | String data; | 47 | ((float)W2[i][j]/scale_factor); |
9 | 48 | Sout[j] = Fun_activ(Sout[j]); | |
10 | float Fun_activ(float x) { | 49 | } |
11 | return 1 / (1 + exp(-1*x)); | 50 | for (int j = 0; j <= N; j++) { |
12 | } | 51 | if (Sout[j] > Sout[digit]) |
13 | 52 | digit = j; | |
14 | void Reservoir(float *Y) { | 53 | } |
15 | long W = C; | 54 | return digit; |
16 | Sh[0] = 1; | 55 | } |
17 | for (int j = 1; j <= P; j++) { | 56 | |
18 | Sh[j] = 0; | 57 | void setup() { |
19 | for (int i = 0; i <= S; i++) { | 58 | Serial.begin(115200); |
20 | W = (D - K * W) % L; | 59 | } |
21 | Sh[j] = Sh[j] + ((float)W/L) * Y[i]; | 60 | |
22 | } | 61 | void loop() { |
23 | Sh[j] = ((Sh[j] - (float)minS[j-1]/ | 62 | if (Serial.available() > 0) { |
24 | scale_factor) / ((float)(maxS[j-1] | 63 | data = Serial.readStringUntil(‘T’); |
25 | - minS[j-1])/scale_factor)) - 0.5 | 64 | |
26 | - (float)meanS[j-1]/(scale_factor*10); | 65 | if (data != “FN”) { |
27 | } | 66 | Y[i] = data.toFloat(); |
28 | } | 67 | i++; |
29 | 68 | } | |
30 | void Hidden_Layer() { | 69 | else { |
31 | Sh2[0] = 1; | 70 | i = 0; |
32 | for (int j = 1; j <= M; j++) { | 71 | Reservoir(Y); |
33 | Sh2[j] = 0; | 72 | Hidden_Layer(); |
34 | for (int i = 0; i <= P; i++) | 73 | byte Digit = Output_Layer(); |
35 | Sh2[j] = Sh2[j] + Sh[i] * | 74 | Serial.print(String(Digit)); |
36 | ((float)W1[i][j]/scale_factor); | 75 | } |
37 | Sh2[j] = Fun_activ(Sh2[j]); | 76 | } |
38 | } | 77 | } |
39 | } | 78 |
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№ | Feature | № | Feature | № | Feature | № | Feature | № | Feature |
---|---|---|---|---|---|---|---|---|---|
1 | CRP | 12 | NEU | 23 | MPV | 34 | GGT | 45 | Sodium |
2 | D-Dimer | 13 | PLT | 24 | PDW | 35 | Glucose | 46 | T-Bil |
3 | Ferritin | 14 | WBC | 25 | RBC | 36 | HDL-C | 47 | TP |
4 | Fibrinogen | 15 | BASO | 26 | RDW | 37 | Calcium | 48 | Triglyceride |
5 | INR | 16 | EOS | 27 | ALT | 38 | Chlorine | 49 | eGFR |
6 | PT | 17 | HCT | 28 | AST | 39 | Cholesterol | 50 | Urea |
7 | PCT | 18 | HGB | 29 | Albumin | 40 | Creatinine | 51 | UA |
8 | ESR | 19 | MCH | 30 | ALP | 41 | CK | ||
9 | Troponin | 20 | MCHC | 31 | Amylase | 42 | LDH | ||
10 | aPTT | 21 | MCV | 32 | CK-MB | 43 | LDL | ||
11 | LYM | 22 | MONO | 33 | D-Bil | 44 | Potassium |
Chaotic Map | List of Parameters | Equation | |
---|---|---|---|
Congruent generator | K = 93 D = 68 L = 9276 C = 73 | (1) |
Feature (Point-Biserial Correlation Coefficient (rpb)) | Feature (Threshold Accuracy of Classification Ath from [12]) |
---|---|
MCHC (0.8) | MCHC (94.35%) |
HDL-C (−0.77) | HDL-C (94.73%) |
Cholesterol (−0.71) | Cholesterol (94.47%) |
LDL (−0.68) | LDL (96.47%) |
Triglyceride (90.96%) | |
Amylase (85.1%) | |
UA (81.12%) | |
TP (79.68%) | |
CK-MB (78.91%) | |
LDH (74.98%) | |
Albumin (72.91%) |
Pair Feature–Feature | Pearson’s Coefficient for COVID-19 Diagnosis | Pearson’s Coefficient for Positive COVID-19 | Pearson’s Coefficient for Negative COVID-19 |
---|---|---|---|
Type High–High | |||
HCT–HGB | 0.96 | 0.95 (High) | 0.97(High) |
MPV–PDW | 0.93 | 0.94 | 0.92 |
HCT–RBC | 0.87 | 0.88 | 0.87 |
MCH–MCV | 0.84 | 0.84 | 0.84 |
HGB–RBC | 0.83 | 0.83 | 0.83 |
NEU–WBC | 0.74 | 0.71 | 0.81 |
Albumin–TP | 0.64 | 0.67 | 0.5 |
MCH–MCHC | 0.53 | 0.62 | 0.99 |
MCH–RDW | −0.55 | −0.61 | −0.51 |
Type High–Low | |||
Fibrinogen–LYM | −0.77 | −0.78 (High) | −0.01 (Low) |
Cholesterol–LDL | 0.65 | 0.59 | 0.012 |
Cholesterol–HDL-C | 0.64 | 0.39 | −0.024 |
Chlorine–Sodium | 0.18 | 0.63 | −0.025 |
Type Low–High | |||
MCHC–MCV | 0.41 | 0.09 1(Low) | 0.84 (High) |
ALT–AST | 0.6 | 0.48 | 0.76 |
eGFR–Urea | −0.55 | −0.49 | −0.63 |
INR–PT | 0.12 | 0.075 | 1 |
D-Bil–T-Bil | 0.6 | 0.33 | 0.91 |
HDL-C–LDL | 0.63 | 0.19 | 0.3 |
Classification Algorithm | Average Model Accuracy A51,% | Average Learning Time, s | Average Inference Time, μs | Normalization Method | Methods for Generating Additional Features |
---|---|---|---|---|---|
Histogram-based Gradient Boosting | 100 | 6.39 | 11.6 | - | - |
Random Forest | 99.943 | 13.15 | 21.9 | QT | - |
K-nearest neighbors | 99.924 | 3.17 | 22.1 | QT | ETP |
Extra Trees classifier | 99.905 | 18.73 | 24.5 | RS | - |
Multilayer Perceptron | 99.886 | 3.99 | 2.2 | RS | LSVMP |
Multinomial Naive Bayes | 99.792 | 2.48 | 11.7 | QT | RTE |
Linear Discriminant Analysis | 99.773 | 9.15 | 7.5 | QT | PN |
Support Vector Machine with non-linear kernel | 99.754 | 222.41 | 43.2 | QT | NS |
Decision Tree | 99.660 | 1.46 | 1.2 | RS | LSVMP |
Passive-Aggressive | 99.641 | 2.91 | 13.1 | QT | RTE |
Bernoulli Naive Bayes | 99.622 | 2.59 | 11.3 | QT | RTE |
Support Vector Machine with linear kernel | 99.584 | 5.21 | 1242 | MM | PN |
Gaussian Naive Bayes | 98.565 | 1.68 | 3.5 | QT | ICA |
LogNNet [12] | 99.509 | 100 | 3 | - | - |
№ | Feature | A1,% | № | Feature | A1,% | № | Feature | A1,% | № | Feature | A1,% |
---|---|---|---|---|---|---|---|---|---|---|---|
43 | LDL | 96.84 | 4 | Fibrinogen | 76.03 | 50 | Urea | 68.10 | 21 | MCV | 56.43 |
39 | Cholesterol | 95.07 | 29 | Albumin | 75.3 | 7 | PCT | 63.25 | 22 | MONO | 56.26 |
36 | HDL-C | 94.99 | 44 | Potassium | 75.22 | 27 | ALT | 62.33 | 5 | INR | 56.19 |
20 | MCHC | 94.35 | 3 | Ferritin | 74.45 | 35 | Glucose | 62.17 | 6 | PT | 56.04 |
48 | Triglyceride | 93.76 | 38 | Chlorine | 73.18 | 49 | eGFR | 62.04 | 17 | HCT | 55.75 |
31 | Amylase | 90.01 | 46 | T-Bil | 72.77 | 14 | WBC | 61.91 | 26 | RDW | 55.62 |
51 | UA | 87.91 | 34 | GGT | 72.62 | 16 | EOS | 61.40 | 9 | Troponin | 54.07 |
42 | LDH | 85.76 | 41 | CK | 70.97 | 13 | PLT | 61.25 | 18 | HGB | 53.94 |
47 | TP | 80.41 | 2 | D-Dimer | 70.46 | 28 | AST | 60.55 | 25 | RBC | 53.43 |
37 | Calcium | 80.40 | 33 | D-Bil | 70.37 | 8 | ESR | 59.12 | 23 | MPV | 53.13 |
32 | CK-MB | 79.73 | 11 | LYM | 69.90 | 15 | BASO | 58.72 | 24 | PDW | 53.09 |
1 | CRP | 77.81 | 45 | Sodium | 69.35 | 12 | NEU | 57.51 | 19 | MCH | 52.13 |
30 | ALP | 77,71 | 40 | Creatinine | 69,24 | 10 | aPTT | 56.53 |
№ | First Feature | Second Feature | Average Accuracy A2,% |
---|---|---|---|
20-19 | MCHC | MCH | 99.81 |
43-32 | LDL | CK-MB | 99.62 |
36-32 | HDL-C | CK-MB | 99.49 |
48-32 | Triglyceride | CK-MB | 99.45 |
43-39 | LDL | Cholesterol | 99.43 |
43-20 | LDL | MCHC | 99.22 |
39-36 | Cholesterol | HDL-C | 99.18 |
39-48 | Cholesterol | Triglyceride | 99.11 |
43-42 | LDL | LDH | 99.05 |
43-31 | LDL | Amylase | 99.03 |
36-20 | HDL-C | MCHC | 98.98 |
43-51 | LDL | UA | 98.86 |
36-31 | HDL-C | Amylase | 98.81 |
39-20 | Cholesterol | MCHC | 98.73 |
20-48 | MCHC | Triglyceride | 98.65 |
39-38 | Cholesterol | Chlorine | 98.62 |
43-38 | LDL | Chlorine | 98.43 |
20-31 | MCHC | Amylase | 98.28 |
36-42 | HDL-C | LDH | 98.16 |
48-42 | Triglyceride | LDH | 98.14 |
№ | First Feature | Second Feature | Third Feature | Average Accuracy A3,% |
---|---|---|---|---|
39-48-32 | Cholesterol | Triglyceride | CK-MB | 99.91 |
39-36-32 | Cholesterol | HDL-C | CK-MB | 99.91 |
43-20-19 | LDL | MCHC | MCH | 99.91 |
20-31-19 | MCHC | Amylase | MCH | 99.85 |
43-51-32 | LDL | UA | CK-MB | 99.85 |
39-20-19 | Cholesterol | MCHC | MCH | 99.83 |
48-42-32 | Triglyceride | LDH | CK-MB | 99.83 |
36-20-19 | HDL-C | MCHC | MCH | 99.79 |
36-42-32 | HDL-C | LDH | CK-MB | 99.79 |
43-38-51 | LDL | Cholesterol | UA | 99.79 |
20-48-19 | MCHC | Triglyceride | MCH | 99.77 |
39-48-31 | Cholesterol | Triglyceride | Amylase | 99.77 |
39-36-38 | Cholesterol | HDL-C | Chlorine | 99.75 |
36-31-51 | HDL-C | Amylase | UA | 99.75 |
39-36-42 | Cholesterol | HDL-C | LDH | 99.75 |
20-51-19 | MCHC | UA | MCH | 99.74 |
39-48-38 | Cholesterol | Triglyceride | Chlorine | 99.72 |
39-31-51 | Cholesterol | Amylase | UA | 99.70 |
39-48-42 | Cholesterol | Triglyceride | LDH | 99.66 |
48-31-42 | Triglyceride | Amylase | LDH | 99.51 |
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Velichko, A.; Huyut, M.T.; Belyaev, M.; Izotov, Y.; Korzun, D. Machine Learning Sensors for Diagnosis of COVID-19 Disease Using Routine Blood Values for Internet of Things Application. Sensors 2022, 22, 7886. https://doi.org/10.3390/s22207886
Velichko A, Huyut MT, Belyaev M, Izotov Y, Korzun D. Machine Learning Sensors for Diagnosis of COVID-19 Disease Using Routine Blood Values for Internet of Things Application. Sensors. 2022; 22(20):7886. https://doi.org/10.3390/s22207886
Chicago/Turabian StyleVelichko, Andrei, Mehmet Tahir Huyut, Maksim Belyaev, Yuriy Izotov, and Dmitry Korzun. 2022. "Machine Learning Sensors for Diagnosis of COVID-19 Disease Using Routine Blood Values for Internet of Things Application" Sensors 22, no. 20: 7886. https://doi.org/10.3390/s22207886