Biases in Ecoacoustics Analysis: A Protocol to Equalize Audio Recorders
Abstract
:1. Introduction
- An explanation of the equalization procedure’s steps;
- Recording white noise to calculate the equalization curves;
- The application of the equalization curves to the soundscape recordings;
- The validation of the procedure using three case studies.
2. Materials and Methods
- Obtaining white noise recordings to generate the equalization curves;
- Defining the equalization procedure;
- Validating the equalization process
- On white noise measures (obtained in the lab);
- In an in-field experiment placing the devices in a single measurement point;
- Providing an example of a monitoring campaign carried out in a Regional Park using two different brands of devices.
2.1. Materials
- Song Meter Micro (Wildlife Acoustics, Inc., Maynard, MA, USA);
- Soundscape Explorer Terrestrial (Lunilettronik Coop S.p.a., Fivizzano, Italy);
- Audiomoth (Open Acoustic Devices, Oxford, UK);
- LD831-C (Larson-Davis, Depew, NY, USA).
2.2. Methods
2.2.1. Recording White Noise in the Anechoic Chamber
2.2.2. Equalization Procedure
Calculating the Equalization Curve
Equalization of In-Field Recordings
Parameters Set in the Equalization Script
2.2.3. Validation of Equalization Process and Practical Example
- On white noise measures (anechoic chamber measurements);
- In an in-field experiment placing the devices at a single measurement point (urban park).
- The anechoic chamber provides an ideal environment for recording identical signals across all devices, facilitating the calculation of equalization curves and enabling a precise comparison of a singular recording for each device.
- The monitoring in the urban park permits the evaluation of the effects of the equalization process in a real case scenario on nine 1 min recordings taken simultaneously at a single measurement site. This site is rich in traffic noise (i.e., cars, buses, motorcycles), birds’ vocalizations, cicadas’ vocalizations, human voices and airplane overflights; thus, the signals recorded are extremely diverse with events spanning the entire spectrum.
- The example of the Regional Park is proposed as a classic monitoring scheme example [15,16,35]. Its soundscape was assessed by placing nine devices on a regular grid (each point distant 200 m from the others), and the eco-acoustic indices were calculated by analyzing a 24 h time trend both before and after the equalization process. This real-world scenario serves as an excellent example for testing the efficacy of the proposed protocol.
Eco-Acoustic Indices
- ACI (acoustic complexity index): This quantifies the vocalizations of avifauna through the study of sound intensity modulation, which varies rapidly over time in the case of biophony but is very constant for numerous anthropogenic noises [14,36]. The implementation is based on the amplitude difference between adjacent time samples within a frequency band, relative to the total amplitude of that band [14].
- ADI (acoustic diversity index): This provides a measure of the diversity of intensity distribution in the spectrum by dividing it into time intervals and calculating the Shannon index [13,14]. Low values are due to extreme diversity in intensity distribution (i.e., nocturnal insects [14]) while high values to a distribution evenness (i.e., high levels of geophony and anthropophony [14] and bird species richness [13]).
- AEI (Acoustic Evenness Index): This is based on the same logic of ADI but applies the Gini coefficient instead of the Shannon index and consequently measures the inequality of signals in bands [37].
- BI (bio-acoustic index): This measures avian abundance by calculating the area under the mean frequency spectrum in the frequency range occupied by biophonies and characterized by a certain amplitude value (this threshold value, expressed in dB, is greater than the lowest value represented in the spectrum) [38].
- NDSI (normalized difference soundscape index): This assesses the distribution of the soundscape between anthropophony and biophony to estimate the level of anthropogenic disturbance of a habitat [39]. It is calculated by dividing the difference between biophony and anthropophony by their sum; the estimation of biophony and anthropophony is carried out by calculating the power spectral density in the frequency ranges of these soundscape components [39]. Values range in the [−1, +1] interval, where +1 ideally indicates the total dominance of biophonies and −1 the total dominance of anthropophonies [39,40].
- H (Acoustic Entropy): This provides an estimate of the total entropy, or heterogeneity, of the recording. It is calculated by computing the product of Shannon’s spectral entropy and temporal entropy [41]. Values range in [0, +1]; +1 indicates an even signal (i.e., silent recording or faint bird calls), while 0 indicates a pure tone (i.e., insects’ vocalizations) [14].
- DSC (Dynamic Spectral Centroid): This returns the spectral centroid of a recording (expressed in Hz) providing information about the sound events of a recording. It is calculated by dividing the spectrum in time intervals and computing the gravity center of the spectrum [13].
- ACI and DSC: min_freq = 500 Hz, max_freq = 12,000 Hz.
- ADI and AEI: min_freq = 500 Hz, max_freq = 12,000 Hz, freq_step = 10 Hz, dB_threshold = −50 dB.
- BI: min_freq = 1700 Hz, max_freq = 12,000 Hz.
- NDSI: min_anthro_freq = 500 Hz, max_anthro_freq = 1700 Hz, min_bio_freq = 1700 Hz, max_bio_freq = 12,000 Hz.
- H and ZCR: the entire spectrum.
Statistical Test
White Noise (Anechoic Chamber)
- The root-mean-square error (RMSE) of the amplitude (1)
- Percentage error on the eco-acoustic indices (ACI, ADI, AEI, BI, NDSI, H, DSC, ZCR) using the sound level meter as reference (2)
Field Recordings at Bicocca Urban Park
Field Recordings in a Regional Park
3. Results
3.1. Validation of White Noise Measures
3.2. Validation of In-Field Single Measurement Site (Urban Park)
- The amplitude deviation is reduced for all devices (graph A);
- The percentage error on the BI, NDSI, DSC and ZCR is greatly diminished, in particular for the AM and SMM; in Table 3, it is possible to notice this decrease in the total percentage error: it is 2000% for AM and 1580% for SMM while only 30% for SET 18 dB and 2% for SET 20 dB;
- The ACI is not affected by the process since it compares adjacent temporal and frequency bins;
- The percentage error on the ADI, AEI and H is reduced in the SMM and AM, while it is increased in the SETs.
- ACI: The soundscape devices’ values are similar to the level meter ones due to the index calculation method. The AM is an exception probably due to its oscillatory frequency response. Looking at one device at a time, the variation in values between the original recordings and the equalized ones is constant or minor.
- ADI: The equalized values of AM and SMM are more similar to the level meter ones, especially in the 512–1024 case for AM and 16,384 for SMM. On the contrary, the SETs are similar to the reference in the beginning and then deviate. This different behavior between the soundscape devices may be explained by the linearity of their sensitivity curves and thus of the intensities on the spectrum: the “flatter” the curve, the smaller the deviation of ADI values from the level meter ones.
- AEI: As for the ADI, the AM and SMM values are nearer to the reference when equalized using a filter order of 1024 and 16,384, respectively. On the other hand, the SETs deviate when equalized. The deviation of the SET when equalized may be due to applying the procedure on a device which already presents a “flat” curve; trying to further linearize it generates errors since it is already linear.
- BI: All sensors’ original values do not match the reference ones; this can be explained by the frequency response of the soundscape devices that are not linear above 5 kHz. With the equalization, the AM values match the level meters’, and the others are nearer to the level meter ones.
- NDSI: Since this index greatly depends on the linearity of the frequency response, AM and SMMs are the ones with the greatest bias. It is possible to notice an improvement for all devices after the equalization, especially for AM and SMMs using an order value of 512.
- H: AM and SMMs benefit from the process but are nowhere near the reference values. The SETs’ original values are nearer to the level meter ones than the equalized values due to their already linear sensitivity curve. Moreover, the similar behavior is present in the ADI and AEI which also evaluate the heterogeneity of the recordings.
- DSC: AM and SMMs present the greatest biases due to their frequency response, as for the NDSI; the equalization reduces them, allowing for comparisons. The SETs do not benefit from the process thanks to their more linear frequency response.
- ZCR: Even in this case, AM and SMMs are affected by biases which are reduced with the equalization process. The SETs’ original values are very similar to the level meter ones probably due to their more linear sensitivity curve.
3.3. In-Field Monitoring Campaign Example (Ticino Park)
- ACI: the time trends remain the same since the index is not affected by the process.
- ADI: in the original time trends graph (C), the presence of the DC offset is noticeable which afflicts all the SMMs except Site 6 (blue curve); after the equalization, the SMMs present a similar trend.
- AEI: The DC offset is also visible in these graphs. The effect of the equalization is noticeable since the time trends are more similar in the post-equalization graph (F).
- BI: The SET (Site 9, black) is distant from the SMMs’ trends before the process (G) due to its flatter frequency response. After the equalization, the SMMs have a more similar trend to the SET.
- NDSI: The procedure reduces the SMMs’ overestimated biophonic contribution to the soundscape and the underestimation of the anthropophonies thanks to the equalization of the frequency response; in fact, values change from being almost constant at +1 for Sites 1–6 (SMMs) to a more oscillatory trend, while the anthrophonic disturbance generated by the highway becomes more evident in Sites 7–8–9 (SMM, SMM and SET).
- H: The DC offset is evident for this index just like the ADI and AEI (since it is not possible to define a low-frequency limit in these indices’ implementation in R). However, in the post-equalization graph (L), the SMMs’ trends are adjusted; given the results in the pocket park, these values may be overestimated.
- DSC: In the pre-equalization graph (M), the bias affecting the SMMs due to their peaked frequency response is extremely evident. After the equalization (N), time trends are corrected since Sites 7–8 (SMMs) are very similar to Site 9 (SET) indicating the influence of the highway (higher intensities at low frequencies); moreover, the general DSC values are reduced from a mean value of 4 kHz to 2.5 kHz, underlining the bias which afflicts this index if not corrected.
- ZCR: The DC offset is evident for this index. After the equalization (P), the values are corrected, and the difference between Sites 7–8–9 (nearer the highway) from the others is noticeable.
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Parameters | 831 | SMM | SET 18 dB | SET 20 dB | AM |
---|---|---|---|---|---|
Sampling rate | 48 kHz | 48 kHz | 48 kHz | 48 kHz | 48 kHz |
Amplitude gain | +0 dB | +18 dB | +18 dB | +20 dB | +15 dB |
Number of devices | 1 | 7 | 2 | 1 | 2 |
Other characteristics | No windproof cap | With and without the waterproof case by Audiomoth |
Device | Noise | Type | Mean Amplitude RMSE (dB) | Total Percentage Error 1 |
---|---|---|---|---|
AM | White | Original | 11.39 | 3777.26 |
Eq n512 | 2.30 | 893.51 | ||
Eq n1k | 1.40 | 596.30 | ||
Eq n16k | 0.11 | 52.75 | ||
SET 18dB | White | Original | 12.65 | 1567.79 |
Eq n512 | 0.29 | 104.25 | ||
Eq n1k | 0.14 | 91.57 | ||
Eq n16k | 0.02 | 21.81 | ||
SET 20 dB | White | Original | 10.27 | 1540.98 |
Eq n512 | 0.23 | 78.12 | ||
Eq n1k | 0.11 | 70.15 | ||
Eq n16k | 0.01 | 42.86 | ||
SMM | White | Original | 8.78 | 1445.55 |
Eq n512 | 0.82 | 158.96 | ||
Eq n1k | 0.49 | 70.60 | ||
Eq n16k | 0.08 | 777.18 |
Device | Noise | Type | Mean Amplitude RMSE (dB) | Total Percentage Error 1 |
---|---|---|---|---|
AM | Urban park | Original | 10.42 | 3676.39 |
Eq n512 | 4.99 | 500.41 | ||
Eq n1k | 5.30 | 440.31 | ||
Eq n16k | 5.81 | 729.19 | ||
SET 18 dB | Urban park | Original | 13.89 | 165.49 |
Eq n512 | 3.94 | 145.85 | ||
Eq n1k | 3.98 | 170.94 | ||
Eq n16k | 4.00 | 169.44 | ||
SET 20 dB | Urban park | Original | 12.16 | 146.55 |
Eq n512 | 4.12 | 144.50 | ||
Eq n1k | 4.14 | 158.51 | ||
Eq n16k | 4.15 | 173.74 | ||
SMM | Urban park | Original | 9.95 | 1876.25 |
Eq n512 | 4.81 | 454.86 | ||
Eq n1k | 4.90 | 374.68 | ||
Eq n16k | 5.07 | 288.19 |
Reference Device (Original) | Soundscape Device | Soundscape Device Status | ACI | ADI | AEI | BI | NDSI | DSC | H | ZCR |
---|---|---|---|---|---|---|---|---|---|---|
831 | AM1 | Original | 3.91 × 10−3 | 3.91 × 10−3 | 3.91 × 10−3 | 1.93 × 10−8 | 1.74 × 10−9 | 3.91 × 10−3 | 3.91 × 10−3 | 3.91 × 10−3 |
Eq n512 | 3.91 × 10−3 | 4.14 × 10−6 | 1.16 × 10−5 | 2.03 × 10−1 | 3.21 × 10−5 | 1.45 × 10−5 | 1.18 × 10−10 | 3.91 × 10−3 | ||
Eq n1k | 3.91 × 10−3 | 3.39 × 10−6 | 3.91 × 10−3 | 3.01 × 10−1 | 1.50 × 10−5 | 9.50 × 10−6 | 2.10 × 10−10 | 3.91 × 10−3 | ||
Eq n16k | 3.91 × 10−3 | 2.59 × 10−6 | 3.57 × 10−7 | 4.96 × 10−1 | 1.39 × 10−6 | 2.22 × 10−6 | 3.91 × 10−3 | 3.91 × 10−3 | ||
831 | SET1 * | Original | 8.41 × 10−2 | 3.51 × 10−4 | 1.97 × 10−3 | 2.28 × 10−4 | 4.32 × 10−1 | 1.95 × 10−2 | 2.72 × 10−7 | 3.91 × 10−3 |
Eq n512 | 3.10 × 10−1 | 1.30 × 10−5 | 3.91 × 10−3 | 4.75 × 10−5 | 1.83 × 10−2 | 9.10 × 10−1 | 8.16 × 10−9 | 8.90 × 10−7 | ||
Eq n1k | 2.26 × 10−1 | 1.52 × 10−7 | 3.91 × 10−3 | 4.67 × 10−5 | 4.73 × 10−2 | 5.70 × 10−1 | 1.98 × 10−11 | 3.91 × 10−3 | ||
Eq n16k | 3.75 × 10−2 | 3.91 × 10−3 | 4.64 × 10−6 | 4.41 × 10−5 | 4.31 × 10−2 | 4.26 × 10−1 | 4.81 × 10−13 | 3.91 × 10−3 | ||
831 | SET3 * | Original | 6.47 × 10−1 | 7.38 × 10−5 | 6.26 × 10−4 | 2.27 × 10−6 | 1.65 × 10−3 | 3.76 × 10−3 | 1.03 × 10−6 | 3.91 × 10−3 |
Eq n512 | 6.76 × 10−1 | 4.78 × 10−5 | 3.30 × 10−6 | 4.29 × 10−7 | 2.26 × 10−5 | 6.76 × 10−2 | 1.44 × 10−8 | 5.06 × 10−7 | ||
Eq n1k | 7.57 × 10−1 | 6.04 × 10−7 | 1.12 × 10−5 | 4.34 × 10−7 | 3.88 × 10−4 | 1.36 × 10−1 | 4.59 × 10−11 | 1.35 × 10−6 | ||
Eq n16k | 1.02 × 10−1 | 3.91 × 10−3 | 3.56 × 10−6 | 5.31 × 10−7 | 9.60 × 10−4 | 1.71 × 10−1 | 1.02 × 10−11 | 1.72 × 10−6 | ||
831 | SMM1393 | Original | 1.07 × 10−1 | 3.91 × 10−3 | 3.99 × 10−7 | 9.44 × 10−3 | 1.95 × 10−2 | 3.91 × 10−3 | 3.91 × 10−3 | 3.91 × 10−3 |
Eq n512 | 9.68 × 10−2 | 7.38 × 10−5 | 1.59 × 10−4 | 1.38 × 10−5 | 3.74 × 10−1 | 1.74 × 10−1 | 4.91 × 10−11 | 3.91 × 10−3 | ||
Eq n1k | 8.98 × 10−2 | 1.37 × 10−4 | 5.89 × 10−4 | 1.87 × 10−5 | 4.68 × 10−3 | 1.79 × 10−1 | 9.57 × 10−11 | 3.91 × 10−3 | ||
Eq n16k | 5.58 × 10−2 | 1.84 × 10−3 | 9.25 × 10−3 | 1.78 × 10−5 | 7.68 × 10−5 | 3.54 × 10−5 | 6.53 × 10−10 | 3.91 × 10−3 | ||
831 | SMM1435 | Original | 5.65 × 10−2 | 1.55 × 10−7 | 9.64 × 10−7 | 3.91 × 10−3 | 3.91 × 10−3 | 3.91 × 10−3 | 3.91 × 10−3 | 3.91 × 10−3 |
Eq n512 | 7.42 × 10−2 | 1.46 × 10−5 | 2.96 × 10−5 | 1.49 × 10−5 | 4.54 × 10−2 | 8.23 × 10−3 | 3.85 × 10−11 | 3.91 × 10−3 | ||
Eq n1k | 7.42 × 10−2 | 2.91 × 10−5 | 7.41 × 10−5 | 2.84 × 10−5 | 6.74 × 10−1 | 9.39 × 10−1 | 7.00 × 10−11 | 3.91 × 10−3 | ||
Eq n16k | 5.47 × 10−2 | 4.00 × 10−4 | 1.15 × 10−3 | 4.97 × 10−5 | 1.58 × 10−9 | 1.69 × 10−7 | 2.23 × 10−9 | 3.91 × 10−3 |
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Potenza, A.; Zaffaroni-Caorsi, V.; Benocci, R.; Guagliumi, G.; Fouani, J.M.; Bisceglie, A.; Zambon, G. Biases in Ecoacoustics Analysis: A Protocol to Equalize Audio Recorders. Sensors 2024, 24, 4642. https://doi.org/10.3390/s24144642
Potenza A, Zaffaroni-Caorsi V, Benocci R, Guagliumi G, Fouani JM, Bisceglie A, Zambon G. Biases in Ecoacoustics Analysis: A Protocol to Equalize Audio Recorders. Sensors. 2024; 24(14):4642. https://doi.org/10.3390/s24144642
Chicago/Turabian StylePotenza, Andrea, Valentina Zaffaroni-Caorsi, Roberto Benocci, Giorgia Guagliumi, Jalal M. Fouani, Alessandro Bisceglie, and Giovanni Zambon. 2024. "Biases in Ecoacoustics Analysis: A Protocol to Equalize Audio Recorders" Sensors 24, no. 14: 4642. https://doi.org/10.3390/s24144642
APA StylePotenza, A., Zaffaroni-Caorsi, V., Benocci, R., Guagliumi, G., Fouani, J. M., Bisceglie, A., & Zambon, G. (2024). Biases in Ecoacoustics Analysis: A Protocol to Equalize Audio Recorders. Sensors, 24(14), 4642. https://doi.org/10.3390/s24144642