Noonindoles A–F: Rare Indole Diterpene Amino Acid Conjugates from a Marine-Derived Fungus, Aspergillus noonimiae CMB-M0339
Abstract
:1. Introduction
2. Results
3. Materials and Methods
3.1. General Experimental Procedures
3.2. Fungal Isolation and DNA Taxonomic Analysis
3.3. Global Natural Product Social (GNPS) Molecular Networking
3.4. MATRIX Cultivation Profiling
3.5. Scale Up Cultivation and Fractionation
3.6. Characterization of Metabolites 5–14
- noonindole A (5); pale yellow solid; [α]D21–18 (c 0.02, MeOH); NMR (600 MHz, methanol-d4), see Table S2 and Figures S10–S15; HRMS (ESI) m/z: [M+H]+ calcd for C34H47N2O6 579.3429; found 579.3456.
- noonindole B (6); white solid; [α]D21–13 (c 0.08, MeOH); NMR (600 MHz, methanol-d4), see Table S3 and Figures S17–S22; HRMS (ESI) m/z: [M+H]+ calcd for C33H45N2O6, 565.3272; found 565.3292.
- noonindole C (7); white solid; [α]D21–9 (c 0.06, MeOH); NMR (600 MHz, methanol-d4), see Table S4 and Figures S24–S29; HRMS (ESI) m/z [M+H]+ calcd for C35H49N2O6, 593.3585; found 593.3611.
- noonindole D (8); white solid; [α]D23–30 (c 0.03, MeOH); NMR (600 MHz, methanol-d4), see Table S5 and Figures S31–S35; HRMS (ESI) m/z [M+H]+ calcd for C33H45N2O6, 565.3272; found 565.3287.
- noonindole E (9); white solid; [α]D23–13 (c 0.06, MeOH); NMR (600 MHz, methanol-d4), see Table S6 and Figures S37–S41; HRMS (ESI) m/z [M+H]+ calcd for C34H45N2O6, 577.3272; found 577.3284.
- noonindole F (10); white solid; [α]D21–18 (c 0.02, MeOH); NMR (600 MHz, methanol-d4), see Table S7 and Figures S43–S48; HRMS (ESI) m/z [M+Na]+ calcd for C27H33NO5Na, 474.2251; found 474.2262.
- paspaline (11); white solid; [α]D22–21 (c 0.09, CHCl3); [24] NMR (600 MHz, DMSO-d6), see Table S8 and Figures S50–S53; [24] HRMS (ESI) m/z [M+H]+ calcd for C28H40NO2, 422.3054; found 422.3071.
- paspaline B (12) white solid; [α]D22–24 (c 0.02, CHCl3); [18] NMR (600 MHz, CDCl3), see Table S9 and Figures S55–S58; [18] HRMS (ESI) m/z [M+Na]+ calcd for C28H37NO3Na, 458.2666; found 458.2680.
- 12-demethylpaspaline-12-carboxylic acid (13); white solid; [α]D22 + 37 (c 0.01, CHCl3); [24] NMR (600 MHz, DMSO-d6), see Table S10 and Figures S60–S63; [24] HRMS (ESI) m/z [M+H]+ calcd for C28H38NO4,452.2795; found 452.2807.
- emindole SB (14); white solid; [α]D21–18 (c 0.05, CHCl3); [24] NMR (600 MHz, DMSO-d6), see Table S11 and Figures S65–S68; [24] HRMS (ESI) m/z [M+H]+ calcd for C28H40NO, 406.3104; found 406.3126.
3.7. Phylogenetic Comparison of CMB-M0339 with Fungi Reported to Produce Biosynthetically Related Indole Terpenes
3.8. UPLC-QTOF-SIE Detection of 5–14 in CMB-M0339 Extract
3.9. X-ray Crystallography
3.10. Antifungal Assay
3.11. Antibacterial Assay
3.12. Cytotoxicity Assays
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Pos. | (5) δH, mult. (J in Hz) | δC | (6) δH, mult. (J in Hz) | δC | (7) δH, mult. (J in Hz) | δC |
---|---|---|---|---|---|---|
2 | - | 152.4 | - | 152.3 | - | 152.2 |
3 | - | 52.0 | - | 51.9 | - | 51.8 |
4 | - | 46.4 | - | 46.2 | - | 46.2 |
5 | a 2.87, ddd (13.6, 13.6, 5.2) b 1.81, br dd (13.6, 5.2) | 28.1 | a 2.88, ddd (13.5, 13.5, 5.1) b 1.83, br dd (13.5, 5.1) | 28.0 | a 2.87, ddd (13.8, 13.8, 5.4) b 1.84, br dd (13.8, 5.4) | 27.9 |
6 | a 2.38, m b 1.91, m | 30.6 | a 2.39, m b 1.93, m | 30.5 | a 2.39, m b 1.93, m | 30.5 |
7 | 4.91, m | 74.6 | 4.90, m | 74.8 | 4.92, br t (8.5) | 74.8 |
9 | 3.68, d (1.9) | 84.0 | 3.72, d (1.5) | 83.9 | 3.71, br s | 84.0 |
10 | - | 198.5 | - | 198.1 | - | 197.9 |
11 | 5.62, d (1.9) | 122.4 | 5.57, d (1.5) | 122.0 | 5.57, d (1.9) | 121.8 |
12 | - | 165.9 | - | 165.8 | - | 165.0 |
13 | - | 80.0 | - | 80.0 | - | 80.1 |
14 | 5.53, dd (10.2, 5.3) | 77.9 | 5.50, dd (10.4, 5.0) | 77.3 | 5.51, dd (10.4, 5.1) | 77.5 |
15 | a 2.24, dd (11.1, 10.2) b 2.21, m | 28.5 | a 2.25, dd (13.0, 10.4) b 2.17, m | 28.3 | a 2.25, dd (13.2, 10.4) b 2.20, m | 28.1 |
16 | 2.92, m | 47.4 | 2.98, m | 47.5 | 2.97, m | 47.5 |
17 | a 2.73, dd (13.0, 6.2) b 2.47 a, m | 27.6 | a 2.74, dd (13.1, 6.3) b 2.47, dd (13.1, 11.1) | 27.6 | a 2.74, dd (13.0, 6.3) b 2.47, dd (13.0, 10.8) | 27.6 |
18 | - | 117.4 | - | 117.3 | - | 117.2 |
19 | - | 126.2 | - | 126.0 | - | 126.1 |
20 | 7.31, d (7.5) | 119.0 | 7.30, d (7.9) | 118.8 | 7.30, d (7.8) | 118.9 |
21 | 6.94, ddd (7.5, 7.5, 1.1) | 120.1 | 6.93, br dd (7.9, 7.7) | 119.9 | 6.93, ddd (7.8, 7.8, 1.1) | 119.9 |
22 | 6.98, ddd (7.5, 7.5, 1.1) | 121.1 | 6.97, ddd (7.9, 7.9, 0.9) | 121.1 | 6.98, ddd (7.8, 7.8, 1.1) | 121.1 |
23 | 7.27, d (7.5) | 112.7 | 7.28, d (7.9) | 112.7 | 7.28, d (7.8) | 112.7 |
24 | - | 141.8 | - | 141.9 | - | 141.9 |
25 | - | 73.3 | - | 73.0 | - | 73.0 |
26 | 1.28, s | 25.4 | 1.28, s | 25.3 | 1.30, s | 25.5 |
27 | 1.26, s | 26.2 | 1.26, s | 26.4 | 1.27, s | 25.8 |
1′ | - | 167.4 | - | 168.9 | - | 168.9 |
2′ | 3.86, d (5.5) | 74.8 | 3.90, br s | 68.7 | 4.02, m | 67.5 |
3′ | 2.47 a, m - | 28.4 - | 2.31, m - | 30.7 - | a 1.90, m b 1.69, m | 37.4 37.4 |
4′ | 1.05 b | 19.4 | 1.09, br d (5.3) | 18.7 | 1.56, m | 26.2 |
5′ | 1.03, d (7.1) | 17.0 | 0.99, d (7.0) | 17.7 | 0.97, d (6.4) | 23.4 |
6′ | - | - | - | - | 0.91, d (6.4) | 21.4 |
3-Me | 1.37, s | 16.7 | 1.37, s | 16.6 | 1.38, s | 16.6 |
4-Me | 1.04 b | 19.4 | 1.10, s | 19.5 | 1.09, br s | 19.4 |
NHMe | - | - | 2.72, s | 33.8 | - | - |
NMe2 | 2.90, s | 43.0 | - | - | 2.93, s | 42.1 |
Pos. | (8) δH, mult. (J in Hz) | δC | (9) δH, mult. (J in Hz) | δC | (10) δH, mult. (J in Hz) | δC |
---|---|---|---|---|---|---|
2 | - | 151.1 | - | 152.5 | - | 152.9 |
3 | - | 50.5 | - | 51.9 | - | 51.8 |
4 | - | 44.6 | - | 46.2 | - | 44.7 |
5 | a 2.87 a, m b 1.80, m | 28.0 | a 3.28 * b 2.36, d (6.3) | 33.0 | a 2.80, ddd (13.5, 13.5, 5.1) b 1.79, dd (13.5, 5.1) | 28.1 |
6 | a 2.37, m b 1.91, m | 30.4 | 5.74, m | 113.5 | a 2.33, m b 1.90, m | 30.2 |
7 | 4.90, m | 74.6 | - | 146.4 | 4.88, m | 74.7 |
9 | 3.71, d (1.9) | 83.7 | 4.09, s | 87.6 | 3.78, d (1.5) | 84.0 |
10 | - | nd | - | 196.8 | - | 200.0 |
11 | 5.58, d (1.9) | 121.7 | 5.71, br s | 119.5 | 6.01, br s | 122.9 |
12 | - | nd | - | nd | - | 167.5 |
13 | - | 78.9 | - | 77.8 | - | 80.8 |
14 | 5.37, dd (10.6, 5.1) | 74.4 | 5.41, dd (9.8, 5.8) | 75.5 | 4.16, dd (10.5, 4.9) | 70.3 |
15 | a 2.16, m b 2.04, ddd (7.1, 5.1, 2.3) | 28.4 | 2.18, m | 30.0 | a 2.08, dd (13.3, 10.5) b 1.93, m | 31.7 |
16 | 2.95, m | 47.0 | 2.90, m | 47.5 | 2.90, m | 48.0 |
17 | a 2.72, dd (13.1, 6.4) b 2.45, dd (13.1, 10.7) | 27.5 | a 2.72, dd (13.0, 6.5) b 2.44, dd (13.0, 10.8) | 28.0 | a 2.68, dd (13.0, 6.1) b 2.42, dd (13.0, 10.0) | 27.8 |
18 | - | 116.8 | - | 117.4 | - | 117.4 |
19 | - | 124.7 | - | 126.2 | - | 126.2 |
20 | 7.30, d (7.7) | 118.6 | 7.30, d (7.2) | 119.1 | 7.29, d (7.6) | 118.8 |
21 | 6.92, ddd (7.7, 7.3, 0.9) | 119.6 | 6.93, m | 120.0 | 6.92, br dd (7.6, 7.2) | 119.8 |
22 | 6.97, ddd (8.1, 7.3, 0.9) | 120.7 | 6.97, m | 121.2 | 6.95, br dd (7.4, 7.2) | 120.9 |
23 | 7.27, d (8.1) | 112.4 | 7.27, d (7.5) | 112.8 | 7.26, d (7.4) | 112.7 |
24 | - | 140.4 | - | 142.1 | - | 141.8 |
25 | - | 71.6 | - | 75.6 | - | 73.2 |
26 | 1.28, s | 25.1 | 1.33, s | 27.1 a | 1.29, s | 25.2 |
27 | 1.26, s | 25.9 | 1.26, s | 27.1 a | 1.27, s | 26.2 |
1′ | - | nd | - | nd | - | - |
2′ | 2.87 a, m | 72.9 | 2.86, d (9.4) | 76.0 | - | - |
3′ | a 1.77, m b 1.69, m | 23.8 | 2.11, m | 28.7 | - - | - - |
4′ | 0.91, t (7.4) | 10.1 | 0.97, t (7.4) | 19.9 | - | - |
5′ | - | - | 0.97, t (7.4) | 19.9 | - | - |
3-Me | 1.37, s | 16.3 | 1.40, s | 16.9 | 1.32, s | 16.5 |
4-Me | 1.08, s | 19.4 | 1.14, s | 21.0 | 1.04, s | 19.6 |
NMe2 | 2.26, s | 43.4 | 2.34, s | 42.4 | - | - |
X (ester) | (a) | (b) | (c) |
N,N-dimethyl-valine | (5) | (9) | (viii) |
N-methyl-valine | (6) | - | - |
N,N-dimethyl-leucine | (7) | (vii) | (vi) |
N,N-dimethyl-homoalanine | (8) | - | - |
N,N-dimethyl-alanine A | (i) | - | - |
N,N-dimethyl-serine B | (ii) | - | - |
N,N-dimethyl-threonine | (iii) | - | - |
N-methyl-proline C | (iv) | - | - |
N,N-dimethyl-isoleucine D | (v) | - | - |
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Kankanamge, S.; Khalil, Z.G.; Bernhardt, P.V.; Capon, R.J. Noonindoles A–F: Rare Indole Diterpene Amino Acid Conjugates from a Marine-Derived Fungus, Aspergillus noonimiae CMB-M0339. Mar. Drugs 2022, 20, 698. https://doi.org/10.3390/md20110698
Kankanamge S, Khalil ZG, Bernhardt PV, Capon RJ. Noonindoles A–F: Rare Indole Diterpene Amino Acid Conjugates from a Marine-Derived Fungus, Aspergillus noonimiae CMB-M0339. Marine Drugs. 2022; 20(11):698. https://doi.org/10.3390/md20110698
Chicago/Turabian StyleKankanamge, Sarani, Zeinab G. Khalil, Paul V. Bernhardt, and Robert J. Capon. 2022. "Noonindoles A–F: Rare Indole Diterpene Amino Acid Conjugates from a Marine-Derived Fungus, Aspergillus noonimiae CMB-M0339" Marine Drugs 20, no. 11: 698. https://doi.org/10.3390/md20110698
APA StyleKankanamge, S., Khalil, Z. G., Bernhardt, P. V., & Capon, R. J. (2022). Noonindoles A–F: Rare Indole Diterpene Amino Acid Conjugates from a Marine-Derived Fungus, Aspergillus noonimiae CMB-M0339. Marine Drugs, 20(11), 698. https://doi.org/10.3390/md20110698