Evolution of an Extended Pathogenicity Motif in VP2 of Infectious Pancreatic Necrosis Virus Isolates from Farmed Rainbow Trout in Turkey
Abstract
:1. Introduction
2. Materials and Methods
2.1. Viruses
2.2. Cell Culture
2.3. Sequencing
2.4. Phylogenetic Analyses
2.5. Codon Adaptation Index Calculation
3. Results
3.1. Virus Isolation and Sequencing
3.2. Phylogenetic Analyses
4. Discussion
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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İsolate Name | Province | Fish Species | İsolation Year | Segment A and B Sequence ID | Accession No Segments A and Segment B | ||
---|---|---|---|---|---|---|---|
1 | 18 | Burdur | O. mykiss | 2006 | 18 Turkey S14 | PP777437 | PP777446 |
2 | 21 | Aydın | O. mykiss | 2007 | 21 Turkey S17 | PP777439 | PP777447 |
3 | 22 | Denizli | O. mykiss | 2005 | 22 Turkey S18 | PP777438 | PP777448 |
4 | 24 | Tokat | O. mykiss | 2007 | 24 turkey S19 | PP777441 | PP777449 |
5 | 27 | Trabzon | O. mykiss | 2010 | 27 Turkey S20 | PP777442 | PP777450 |
6 | 28 | Kayseri | O. mykiss | 2007 | 28 Turkey S21 | PP777440 | PP777451 |
7 | Sdf-4 | Trabzon | O. mykiss | 2010 | SDF4QIA_S7 | PP777443 | PP777452 |
8 | 1054 | Tokat | O. mykiss | 2013 | 1054QIA_S6 | PP777444 | PP777454 |
9 | Gre | Giresun | O. mykiss | 2016 | GreQI_S5 | PP777445 | PP777453 |
İsolates | Years | VP2 aa Positions | Provinces | İsolation Sources | ||
---|---|---|---|---|---|---|
217 | 221 | 247 | ||||
22 | 2005 | P | T | A | Denizli (SW) | routine screening |
18 | 2006 | P | T | A | Burdur (SW) | routine screening |
21 | 2007 | P | T | A | Aydın (SW) | routine screening |
24 | 2007 | P | T | A | Tokat (BS) | routine screening |
28 | 2007 | P | T | A | Kayseri (C) | routine screening |
27 | 2010 | P | T | A | Trabzon (BS) | routine screening |
Sdf-4 | 2010 | P | T | E | Trabzon (BS) | routine screening |
1054 | 2013 | P | T | E | Tokat (BS) | outbreak–disease |
GRE | 2016 | P | T | E | Giresun (BS) | outbreak–disease |
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Tamer, C.; Ulrich, K.; Di Paola, N.; Kurucay, H.N.; Albayrak, H.; Weidmann, M. Evolution of an Extended Pathogenicity Motif in VP2 of Infectious Pancreatic Necrosis Virus Isolates from Farmed Rainbow Trout in Turkey. Viruses 2024, 16, 994. https://doi.org/10.3390/v16060994
Tamer C, Ulrich K, Di Paola N, Kurucay HN, Albayrak H, Weidmann M. Evolution of an Extended Pathogenicity Motif in VP2 of Infectious Pancreatic Necrosis Virus Isolates from Farmed Rainbow Trout in Turkey. Viruses. 2024; 16(6):994. https://doi.org/10.3390/v16060994
Chicago/Turabian StyleTamer, Cuneyt, Kristina Ulrich, Nicholas Di Paola, Hanne Nur Kurucay, Harun Albayrak, and Manfred Weidmann. 2024. "Evolution of an Extended Pathogenicity Motif in VP2 of Infectious Pancreatic Necrosis Virus Isolates from Farmed Rainbow Trout in Turkey" Viruses 16, no. 6: 994. https://doi.org/10.3390/v16060994