Noble Metallic Pyramidal Substrate for Surface-Enhanced Raman Scattering Detection of Plasmid DNA Based on Template Stripping Method
Abstract
:1. Introduction
2. Materials and Methods
2.1. Instrument
2.2. Preparation of Plasmid DNA to Be Measured
2.3. Fabrication of Noble Metallic PS
2.4. Scanning Electron Microscopy Imaging of Pyramidal Structures
3. Results and Discussion
3.1. Simulation Analysis of Electric Field Distribution Using PS
3.2. Raman Spectra of R6G on Pyramidal Sensors
3.3. SERS Using Pyramidal Sensors by Detection of Plasmid DNA
4. Conclusions
Author Contributions
Funding
Conflicts of Interest
References
- Wang, C.G.; Wu, X.Z. Orientation-dependent nanostructure arrays based on anisotropic silicon wet-etching for repeatable sur- face-enhanced Raman scattering. Nanoscale 2016, 8, 4672–4680. [Google Scholar] [CrossRef]
- Liu, X.; Huang, M. Fabrication of a large-area, flexible micro-pyramid PET film SERS substrate and its application in the de- tection of dye in herbal tea. Laser Phys. Lett. 2018, 15, 55701. [Google Scholar] [CrossRef]
- Oo, S.Z.; Chen, R.Y. Disposable plasmonic plastic SERS sensor. Opt. Express 2013, 21, 18484. [Google Scholar] [CrossRef]
- Endo, T.; Yamada, H. Template stripping method-based Au nanoarray for surface-enhanced Raman scattering detection of antiepileptic drug. Micromachines 2020, 11, 936. [Google Scholar] [CrossRef] [PubMed]
- Zhang, C.; Jiang, S.Z. SERS detection of R6G based on a novel graphene oxide/silver nanoparticles/silicon pyramid arrays structure. Opt. Express 2015, 23, 24811. [Google Scholar] [CrossRef]
- Song, J.; Cheng, S. A novel surface-enhanced Raman scattering substrate: Diamond nanopit infilled with gold nanoparticle. Mater. Lett. 2014, 135, 214–217. [Google Scholar] [CrossRef]
- Xia, M.; Zhang, P. Coupling SPP with LSPR for enhanced field confinement: A simulation study. J. Phys. Chem. C 2016, 120, 527–533. [Google Scholar] [CrossRef] [Green Version]
- Cui, B.; Clime, L. Fabrication of large area nanoprism arrays and their application for surface enhanced Raman spectroscopy. Nanotechnology 2008, 19, 145302. [Google Scholar] [CrossRef]
- Wang, Y.; Yang, Y. Rapidly fabricating large-scale plasmonic silver nanosphere arrays with sub-20 nm gap on Si-pyramids by inverted annealing for highly sensitive SERS detection. RSC Adv. 2017, 7, 11578–11584. [Google Scholar] [CrossRef] [Green Version]
- Atanasov, P.A.; Nedyalkov, N.N. Ag and Au nanostructures for surface-enhanced Raman spectroscopy of Mospilan 20 SP (acetamiprid). J. Raman Spectrosc. 2020, 51, 2398–2407. [Google Scholar] [CrossRef]
- Du, L.; Wang, Y. Preparation of Au nanocolloids by in situ dispersion and their applications in surface-enhanced Raman scattering (SERS) films. Ind. Eng. Chem. Res. 2016, 55, 6783–6791. [Google Scholar] [CrossRef]
- Hering, K.; Cialla, D. SERS: A versatile tool in chemical and biochemical diagnostics. Anal. Bioanal. Chem. 2008, 390, 113–124. [Google Scholar] [CrossRef] [PubMed]
- Kahl, M.; Voges, E. Periodically structured metallic substrates for SERS. Sens. Actuators B Chem. 1998, 51, 285–291. [Google Scholar] [CrossRef]
- Ko, H.; Singamaneni, S. Nanostructured surfaces and assemblies as SERS media. Small 2008, 4, 1576–1599. [Google Scholar] [CrossRef]
- Huang, J.; Zhao, Y. Ordered Ag/Si nanowires array: Wide-range surface-enhanced Raman spectroscopy for reproducible biomolecule detection. Nano Lett. 2013, 13, 5039–5045. [Google Scholar] [CrossRef]
- Liu, A.; Zhang, S. Ag-coated nylon fabrics as flexible substrates for surface-enhanced Raman scattering swabbing applications. J. Mater. Res. 2020, 35, 1271–1278. [Google Scholar] [CrossRef]
- Wang, Y.; Lu, N. Highly effective and reproducible surface-enhanced Raman scattering substrates based on Ag pyramidal arrays. Nano Res. 2013, 6, 159–166. [Google Scholar] [CrossRef]
- Li, G.; Feng, W. Facile preparation of nanoporous Ag decorated with CeO2 nanoparticles for surface-enhanced Raman scatter- ing. J. Mater. Res. 2019, 34, 2003–2013. [Google Scholar] [CrossRef]
- Alba, M.; Pazos-Perez, N. Macroscale plasmonic substrates for highly sensitive surface-enhanced Raman scattering. Angew. Chem. Int. Ed. 2013, 52, 6459–6463. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Lin, Y.; Liao, J. Focused ion beam-fabricated Au micro/nanostructures used as a surface enhanced Raman scattering-active substrate for trace detection of molecules and influenza virus. Nanotechnology 2011, 22, 185308. [Google Scholar] [CrossRef]
- Yue, W.; Wang, Z. Electron-beam lithography of gold nanostructures for surface-enhanced Raman scattering. J. Micro-Mech. Micromech. 2012, 22, 125007. [Google Scholar] [CrossRef]
- Abu Hatab, N.A.; Oran, J.M. Surface-enhanced Raman spectroscopy substrates created via electron beam lithography and nanotransfer printing. ACS Nano 2008, 2, 377–385. [Google Scholar] [CrossRef] [PubMed]
- Okamoto, T.; Yamaguchi, I. Local plasmon sensor with gold colloid monolayers deposited upon glass substrates. Opt. Lett. 2000, 25, 372–374. [Google Scholar] [CrossRef]
- Vieu, C.; Carcenac, F. Electron beam lithography: Resolution limits and applications. Appl. Surf. Sci. 2000, 164, 111–117. [Google Scholar] [CrossRef]
- He, M.; Cao, B. Synthesis of multi-branched gold nanostructures and their surface-enhanced Raman scattering properties of 4-aminothiophenol. J. Mater. Res. 2019, 34, 2928–2934. [Google Scholar] [CrossRef] [Green Version]
- Le Bris, A.; Maloum, F. Self-organized ordered silver nanoparticle arrays obtained by solid state dewetting. Appl. Phys. Lett. 2014, 105, 203102. [Google Scholar] [CrossRef]
- Wu, W.; Hu, M. Cones fabricated by 3D nanoimprint lithography for highly sensitive surface enhanced Raman spectroscopy. Nanotechnology 2010, 21, 255502. [Google Scholar] [CrossRef]
- Sun, C.; Linn, N.C. Templated fabrication of periodic metallic nanopyramid arrays. Chem. Mater. 2007, 19, 4551–4556. [Google Scholar] [CrossRef]
- Melngailis, J.; Kamal, A.S.A. Focused ion beam lithography. Nucl. Instrum. Methods Phys. Res. 1993, 81, 1271–1280. [Google Scholar] [CrossRef]
- Malek, K.; Brzózka, A. SERS imaging of silver coated nanostructured Al and Al2O3 substrates. The effect of nanostructure. J. Raman Spectrosc. 2014, 45, 281–291. [Google Scholar] [CrossRef]
- Schmidl, G.; Dellith, J. Silicon template preparation for the fabrication of thin patterned gold films via template stripping. J. Micro-Mech. Micromech. 2015, 25, 125005. [Google Scholar] [CrossRef]
- Gong, J.; Lipomi, D.J. Micro- and nanopatterning of inorganic and polymeric substrates by indentation lithography. Nano Lett. 2010, 10, 2702–2708. [Google Scholar] [CrossRef] [PubMed]
- Wang, P.; Liang, O. Ultra-sensitive graphene-plasmonic hybrid platform for label-free detection. Adv. Mater. 2013, 25, 4918–4924. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Xie, W.; He, S. Fabrication of a trans-scale bimetallic synergistic enhanced Raman scattering substrate with high surface-en hanced Raman scattering activity. Anal. Methods 2015, 7, 1676–1679. [Google Scholar] [CrossRef]
- Li, J.F.; Huang, Y.F. Shell-isolated nanoparticle-enhanced Raman spectroscopy. Nature 2010, 464, 392–395. [Google Scholar] [CrossRef] [PubMed]
- Krohne-Nielsen, P.; Novikov, S.M. Surface-enhanced Raman microscopy of hemispherical shells stripped from templates of anodized aluminum. J. Raman Spectrosc. 2012, 43, 834–841. [Google Scholar] [CrossRef]
- Klemme, D.J.; Johnson, T.W. Self-aligned grating couplers on template-stripped metal pyramids via nanostencil lithography. Appl. Phys. Lett. 2016, 108, 213106. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Martina, M.; Fleischer, M. Template stripping and bonding of smooth probes with nanoscale features for tip-enhanced Raman spectroscopy. Microelectron. Eng. 2017, 171, 31–36. [Google Scholar] [CrossRef]
- Tiefenauer, R.F.; Tybrandt, K. Fast and versatile multiscale patterning by combining template-stripping with nanotransfer printing. ACS Nano 2018, 12, 2514–2520. [Google Scholar] [CrossRef]
- Rubio-Lara, J.A.; Bergler, F. Ultraflat gold QCM electrodes fabricated with pressure-forming template stripping for protein studies at the nanoscale. Langmuir 2019, 35, 8889–8895. [Google Scholar] [CrossRef]
- Zhang, J.; Winget, S.A. Ag@Au concave cuboctahedra: A unique probe for monitoring Au-catalyzed reduction and oxidation reactions by surface-enhanced Raman spectroscopy. ACS Nano 2016, 10, 2607–2616. [Google Scholar] [CrossRef]
- Pashaee, F.; Tabatabaei, M. Tip-enhanced Raman spectroscopy: Plasmid-free vs. plasmid-embedded DNA. Analyst 2016, 141, 3251–3258. [Google Scholar] [CrossRef]
- Mirajkar, S.; Dhayagude, A. Distinguishing genomic DNA of Brassica juncea and Arabidopsis thaliana using surface-en hanced Raman scattering. J. Raman Spectrosc. 2019, 51, 89–103. [Google Scholar] [CrossRef]
- Li, R.; Lei, J. Hybrid 3D SERS substrate for Raman spectroscopy. Chem. Phys. Lett. 2020, 754, 137733. [Google Scholar] [CrossRef]
- Ferchichi, A.; Laariedh, F. Fabrication of disposable flexible SERS substrates by nanoimprint. Microelectron. Eng. 2015, 140, 52–55. [Google Scholar] [CrossRef]
- Li, R.; Li, H. Surface-enhanced Raman scattering from rhodamine 6G on gold-coated self-organized silicon nanopyramidal array. J. Mater. Res. 2013, 28, 3401–3407. [Google Scholar] [CrossRef]
- Vernon, K.C.; Davis, T.J. Physical mechanisms behind the SERS enhancement of pyramidal pit substrates. J. Raman Spectrosc. 2010, 41, 1106–1111. [Google Scholar] [CrossRef]
- Liberman, V.; Sworin, M. Nonlinear bleaching, absorption, and scattering of 532-nm-irradiated plasmonic nanoparticles. J. Appl. Phys. 2013, 113, 53107. [Google Scholar] [CrossRef] [Green Version]
- Liu, S.; Wang, X. The fabrication of a high-sensitivity surface-enhanced Raman spectra substrate using texturization and electroplating technology. Appl. Surf. Sci. 2019, 490, 109–116. [Google Scholar] [CrossRef]
- Girão, A.V.; Pinheiro, P.C. Tailoring gold and silver colloidal bimetallic nanoalloys towards SERS detection of rhodamine 6G. RSC Adv. 2017, 7, 15944–15951. [Google Scholar] [CrossRef] [Green Version]
- Lee, Y.; Kamal, A.S.A. Gap plasmons multiple mirroring from spheres in pyramids for surface-enhanced Raman scattering. ACS Photonics 2016, 3, 2405–2412. [Google Scholar] [CrossRef]
- Lipiec, E.; Sekine, R. Molecular Characterization of DNA double strand breaks with tip-enhanced Raman scattering. Angew. Chem. Int. Ed. 2014, 53, 169–172. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Olsztyńska-Janus, S.; Gąsior-Głogowska, M. Spectroscopic techniques in the study of human tissues and their components. Part II: Raman spectroscopy. Acta Bioeng. Biomech. 2012, 14, 121–133. [Google Scholar]
- Gupta, S.; Banaszak, A. Detection of DNA bases and environmentally relevant biomolecules and monitoring ssDNA hybridi- zation by noble metal nanoparticles decorated graphene nanosheets as ultrasensitive G-SERS platforms. J. Raman Spectrosc. 2021, 52, 930–948. [Google Scholar] [CrossRef]
- Benedetti, E.; Bramanti, E. Determination of the relative amount of nucleic acids and proteins in leukemic and normal lymphocytes by means of fourier transform infrared microspectroscopy. Appl. Spectrosc. 1997, 51, 792–797. [Google Scholar] [CrossRef]
- Moisoiu, V.; Stefancu, A. SERS assessment of the cancer-specific methylation pattern of genomic DNA: Towards the detection of acute myeloid leukemia in patients undergoing hematopoietic stem cell transplantation. Anal. Bioanal. Chem. 2019, 411, 7907–7913. [Google Scholar] [CrossRef]
- Andrushchenko, V.; Tsankov, D. Spectroscopic detection of DNA quadruplexes by vibrational circular dichroism. J. Am. Chem. Soc. 2011, 133, 15055–15064. [Google Scholar] [CrossRef] [PubMed]
- Dovbeshko, G.I.; Gridina, N.Y. FTIR spectroscopy studies of nucleic acid damage. Talanta 2000, 53, 233–246. [Google Scholar] [CrossRef]
- Ponkumar, S.; Duraisamy, P. Structural analysis of DNA interactions with magnesium ion studied by Raman spectroscopy. Am. J. Biochem. Biotechnol. 2011, 7, 135–140. [Google Scholar]
Publisher’s Note: MDPI stays neutral with regard to jurisdictional claims in published maps and institutional affiliations. |
© 2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
Share and Cite
Wu, W.; Li, R.; Chen, M.; Li, J.; Zhan, W.; Jing, Z.; Pang, L. Noble Metallic Pyramidal Substrate for Surface-Enhanced Raman Scattering Detection of Plasmid DNA Based on Template Stripping Method. Micromachines 2021, 12, 923. https://doi.org/10.3390/mi12080923
Wu W, Li R, Chen M, Li J, Zhan W, Jing Z, Pang L. Noble Metallic Pyramidal Substrate for Surface-Enhanced Raman Scattering Detection of Plasmid DNA Based on Template Stripping Method. Micromachines. 2021; 12(8):923. https://doi.org/10.3390/mi12080923
Chicago/Turabian StyleWu, Wenjie, Rui Li, Maodu Chen, Jiankang Li, Weishen Zhan, Zhenguo Jing, and Lu Pang. 2021. "Noble Metallic Pyramidal Substrate for Surface-Enhanced Raman Scattering Detection of Plasmid DNA Based on Template Stripping Method" Micromachines 12, no. 8: 923. https://doi.org/10.3390/mi12080923