Parvalbumin: A Major Fish Allergen and a Forensically Relevant Marker
Abstract
:1. Introduction
2. Parvalbumin Gene Diversity
3. Parvalbumin—A Major Fish Allergen
Name of Allergen | Organism | Biochemical Name | Genbank Nucleotide Accession no. | Reference | |
---|---|---|---|---|---|
Scientific Name | Common Name | ||||
Fish species | |||||
Clu h 1 | Clupea harengus | Atlantic herring | β-parvalbumin | FM178220 | [61] |
FM178221 | |||||
FM178222 | |||||
Cten i 1 | Ctenopharyngodon idella | Grass carp | β-parvalbumin | MK140606 | [62] |
Cyp c 1 | Cyprinus carpio | Common carp | β-parvalbumin | AJ292211 | [63] |
AJ292212 | |||||
Gad c 1 | Gadus callarias | Baltic cod | β-parvalbumin | [64] | |
Gad m 1 | Gadus morhua | Atlantic cod | β-parvalbumin | AY035584 | [65] |
AM497927 | |||||
AY035585 | |||||
AM497928 | |||||
lat c 1 | Lates calcarifer | Baramundi | β-parvalbumin | AY688372 | [66] |
KF021278 | |||||
AY626068 | |||||
KF021279 | |||||
AY688373 | |||||
Lep w 1 | Lepidorhombus whiffiagonis | Megrim, whiff, turbot fish | β-parvalbumin | AM904681 | [19] |
Onc m 1 | Oncorhynchus mykiss | Rainbow trout | β-parvalbumin | not specified | [67] |
Pan h 1 | Pangasianodon hypophthalmus | Striped catfish | β-parvalbumin | XM_026916202 | [68] |
XM_026947968 | |||||
Ras k 1 | Rastrelliger kanagurta | Indian mackerel | parvalbumin | KX527884 | [69] |
Sal s 1 | Salmo salar | Atlantic salmon | β-parvalbumin 1 | X97824 | [70] |
Sar sa 1 | Sardinops sagax | Pacific pilchard | β-parvalbumin | FM177701 | [47] |
Sco s 1 | Scomber scombrus | Atlantic mackerel | parvalbumin | FM994926 | [48] |
Seb m 1 | Sebastes marinus | Ocean perch, redfish | β-parvalbumin | FM178218 | [71] |
FM178219 | |||||
Sole s 1 | Solea solea | Sole | parvalbumin | [72] | |
Thu a 1 | Thunnus albacares | Yellow fin | β-parvalbumin | FM178217 | [73] |
Xip g 1 | Xiphias gladius | Swordfish | β-parvalbumin | FM202668 | [19] |
Non-fish Species | |||||
Cro p 1 | Crocodylus porosus | Australian saltwater crocodile | β-parvalbumin | XM_019542160 | [74] |
Cro p 2 | α-parvalbumin | XM_019544844 | |||
Gal d 8 | Gallus domesticus | Chicken | α-parvalbumin | FM994924 | [75] |
[76] | |||||
Ran e 1 | Rana esculenta (Pelophylax esculentus) | Edible frog | α-parvalbumin | AJ315959 | [77] |
Ran e 2 | Rana esculenta (Pelophylax esculentus) | Edible frog | β-parvalbumin | AJ414730 |
4. Forensic Application of Parvalbumin
4.1. Protein-Based Assays
4.2. Using DNA-Based Assays for Fish Identification
Organism | Primer Name | Primer Sequence (5′-3′) | Amplification Length (BP) | Amplification Region | Reference | |
---|---|---|---|---|---|---|
Scientific Name | Common Name | |||||
Universal | IFF232 | GACAAGAGCGGCTTCATTGAGG | 268 | β-parvalbumin | [122] | |
IFF233 | TCAACTCCAATCTTGCCATCACCAT | Exon 3 to Exon 4 | ||||
Universal | IFF 233a | TCAATACCGATCTTGCCATCACCGT | NA | [123] | ||
IFF 233b | TCAACTCCGATCATGCCATCACCAT | |||||
Universal | SUN-F | CAGGACAAGAGTGGCTTCAT | 57 | β2-parvalbumin | [25] | |
SUN-R | GAAGTTCTGCAGGAACAGCTT | Exon2 to Exon 3 | ||||
probe | AGGAGGAYGAGCT | |||||
C. harengus | Atlantic herring Pacific herring | CluHaPaF | CCGCTGATGATGTGAAGAAG | 189 | β2-parvalbumin | [124] |
Clupea pallasii | CluHaPaR | GCAGGAACAGCCTGAGAGAG | Exon 2 to Exon 3 | |||
Cyprinus carpio | Carp | MA-f | ACAAGCTTATGGCTTTCGCCGGAATTCTGA | β-parvalbumin | [125] | |
MA-r | ATCGGATCCTATGCCTTGATCATGGC | |||||
G. morhua | Atlantic cod | rGad m 1.01 | ATGGCATTCGCTGGAATTCTCG | 599 | ||
rGad m 1.02 | ATGGCTTTCGCCGGAATTCTG | 797 | ||||
Lophius piscatorius Lophius budegassa | White anglerfish | DAS-F | ACAACTTTCCCCGAGAAGC | 196 | β2-parvalbumin | [126] |
Black-bellied anglerfish | DAS-R | ACAACATCACAGTTTAAGTTTTGC | Exon 2 to Exon 3 | |||
Oncorhynchus mykiss | Rainbow trout | 601F9 forward | AGACAGAGACACAGGTTGGCTTACTATTCT | 75 | β-parvalbumin | [24] |
601G0 reverse | TTTACGACATAGGGAGCAGCTTACTATTCT | Intron 2 | ||||
Paralichthys olivaceus | Japanese flounder | sunF | GATGACACCATATGTCTCTGGCATCTAAGCTGTCTG | 327 | β-parvalbumin | [127] |
sunR | GTGTCCTCGAGTTACTGTTTCACCATCGCCGC | |||||
S. salar | Atlantic salmon | 601F5 forward | AGACAGAGACACAGGTTGGCTTACTATTCT | 126 | β-parvalbumin | [24] |
601F6 reverse | TTTACGACATAGGGAGCAGCTTACTATTCT | Intron 2 | ||||
S. salar | Atlantic salmon | Sense PV | AGYGGCTTYATHGARGARGAYGARYT | 430 | β2-parvalbumin | [70] |
Antisense PV1 | YTGYTTNACNAANACNGCRAAYTC | Exon 2 to Exon 4 | ||||
Antisense PV2 | GAATTCRTCRACHCCDATYTTHCC | |||||
S. salar | Atlantic salmon | IFF 156 | ATGGCCTGTGCCCATCTGTGC | 300 | β1-parvalbumin | [122] |
IFF 157 | GGACTTCGAGGCAAAGCCAAT | Exon 1 to Exon 2 | ||||
S. salar | Atlantic salmon | Psal1 | CTGTGCCCATCTGTGCAAGG | 650 | β1-parvalbumin | [128] |
Oncorhynchus mykiss | Rainbow trout | Psal2 | CCAATCATGCCATCACCATCG | Exon1 to Exon 3 | ||
Salmo trutta | Brown trout | Psal3 | TACCGATGCAGAGACAAAGG | 931 | β1-parvalbumin | |
Salvelinus alpinus | Arctic char | Psal4 | GTCTTGGGCAATATTGTTCC | 3′ end of Exon 3 to Exon 4 | ||
Scomber japonicus | Mackerel | SJ9 | CCCTACAAAGCAAAAACATC | 1500 | β-parvalbumin | [129] |
SJ487 | GCATAGGAGGAAAGGICTCT | |||||
SJ106 | GTAGITTCGACCACAAAAAGTT | 190 | β-parvalbumin | |||
SJG441r | ACTGCTGTATAGGTGATAGG | Exon 2 to Intron 2 | ||||
SJG107f | AGCTATTCTGTATCGCTTCG | 284 | β-parvalbumin | |||
SGG297r | GGTGTGAGTCTTACTTCAGC | Intron 1 to Intron 2 | ||||
S. scombrus Trachurus trachurus | Atlantic mackerel Atlantic horse mackerel | Pval1Fw | CTGAAGCTGTTCCTGCAGAACTT | 87 | β-parvalbumin | [130] |
Pval1Rev | GCTGTCACCGGCCTTGAG | |||||
Pval1Probe | [6FAM]TCCGACGCCGAGACCAAGGC[TAM] | Intron 2 to Exon 3 | ||||
Spondyliosoma cantharus | Black seabream | 1189B6 | TGAGCTGAAGTAAGACACTCAGGAA | 78 | β-parvalbumin | [23] |
1189B7 | TCTAAAATGTTGTCTTGGTGCCTTAG | |||||
1273H9(probe) | TGCACACTTGAGCAAGCAATGGCC | Intron 2 | ||||
Spondyliosoma cantharus | Black seabream | 601F7 forward | AGACAGAGACACAGGTTGGCTTACTATTCT | 79 | β-parvalbumin | [24] |
601F8 reverse | TTTACGACATAGGGAGCAGCTTACTATTCT | Intron 2 | ||||
Thunnus albacares | Yellowfin tuna | ALB4F | AGGATTGGATTTTCTGTCTTAGCTT | 227 | β-parvalbumin | [22] |
ALB4R | TCAGTTTGTGTCAATTGGTCTGTAG | Intron 2 | ||||
PARVT1F | GGGGTTGGAGATGAATGGCA | 785 | β-parvalbumin | |||
PARVT1R | GAGTCACCGGCCATGAGAAA | Intron 1 to Exon 3 | ||||
PARVT2F | ACAGCTGCCGACTCTTTCAA | 670 | Parvalbumin β | |||
PARVT2R | CGGCCATGAGAAATGCCTTG | Intron 1/Exon 2 to Exon 3 |
4.3. Methods of Parvalbumin Allergen Quantification
5. Future Outlook
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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Mukherjee, S.; Horka, P.; Zdenkova, K.; Cermakova, E. Parvalbumin: A Major Fish Allergen and a Forensically Relevant Marker. Genes 2023, 14, 223. https://doi.org/10.3390/genes14010223
Mukherjee S, Horka P, Zdenkova K, Cermakova E. Parvalbumin: A Major Fish Allergen and a Forensically Relevant Marker. Genes. 2023; 14(1):223. https://doi.org/10.3390/genes14010223
Chicago/Turabian StyleMukherjee, Subham, Petra Horka, Kamila Zdenkova, and Eliska Cermakova. 2023. "Parvalbumin: A Major Fish Allergen and a Forensically Relevant Marker" Genes 14, no. 1: 223. https://doi.org/10.3390/genes14010223