Ovule Transcriptome Analysis Discloses Deregulation of Genes and Pathways in Sexual and Apomictic Limonium Species (Plumbaginaceae)
Abstract
:1. Introduction
2. Materials and Methods
2.1. Plant Material
2.2. Ovule Extraction
2.3. Total RNA Extraction and Library Preparation
2.4. Processing, Mapping, and Quantification of Illumina Reads
2.5. Differentially Expressed Genes Detection
2.6. Functional Annotation
2.7. Transcription Factors (TFs) Involved in Plant Reproduction
2.8. Enrichment Analysis
3. Results
3.1. Gene Expression
3.2. Overall Differential Expression Analysis
3.3. DEGs Potentially Implicated in Apomixis Regulation
3.4. Floral-Related DEGs
3.5. General GO Enrichment
3.6. GO Enrichment in Floral and Pollen-Related DEGs
4. Discussion
4.1. Differential Regulation of HKG and Metabolic Pathways in Sexual and Apomictic Plants
4.2. Feminization of Apomicts Is Related to Down-Regulation of Floral Genes Specifying Stamens
4.3. Male Sterility Appears to Be Linked with Downregulation of Genes Connected to Pollen Wall Formation and Assembly and Pollen Tube Growth
4.4. Pollen-Stigma Interactions
4.5. Up-Regulation of Specific Genes Related with Embryo Formation in the Apomicts
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Test Samples (T) | Control Samples (c) | Comparison | All DEGs | Annotated DEGs | ||||
---|---|---|---|---|---|---|---|---|
Species | Stage (Rep) | Species | Stage (Rep) | Total | Up (%) | Down (%) | ||
L. multiflorum (M) [Apomictic] | Apomictic vs. sexual | |||||||
S1 (R1) | L. auriculifolium (a) [Sexual] | S1 (R1) | M1a1 | 3517 | 1080 | 453 (42%) | 627 (58%) | |
S2 (R1) | M1a2 | 2785 | 663 | 295 (44%) | 368 (56%) | |||
S2 (R1-5) | S3/S4 (R1) | M2a4 | 4400 | 1174 | 489 (42%) | 685 (58%) | ||
S1 (R1-4) | L. ovalifolium (o) [Sexual] | S1 (R1) | M1o1 | 3068 | 809 | 371 (46%) | 438 (54%) | |
S2 (R1) | M1o2 | 3054 | 1018 | 419 (41%) | 599 (59%) | |||
S2 (R1-5) | S3/S4 (R1) | M2o4 | 12,839 | 3544 | 2827 (80%) | 717 (20%) | ||
Apomictic vs. facultative apomictic | ||||||||
S2 (R1-5) | L. dodartii (d) [Facultative apomictic] | S4 (R1-3) | M2d4 | 806 | 226 | 41 (18%) | 185 (82%) | |
Between stages comparisons (same species) | ||||||||
S2 (R1-5) | L. multiflorum (M) [Apomictic] | S1 (R1-4) | M2m1 | 1096 | 387 | 379 (98%) | 8 (2%) | |
L. auriculifolium (A) [Sexual] | S2 (R1) | L. auriculifolium (a) [Sexual] | S1 (R1) | A2a1 | 796 | 276 | 40 (14%) | 236 (86%) |
S3/S4 (R1) | A4a1 | 351 | 111 | 93 (84%) | 18 (16%) | |||
S2 (R1) | A4a2 | 1346 | 471 | 356 (76%) | 115 (24%) | |||
L. ovalifolium (O) [Sexual] | S2 (R1) | L. ovalifolium (o) [Sexual] | S1 (R1) | O2o1 | 693 | 208 | 189 (91%) | 19 (9%) |
S3/S4 (R1) | O4o1 | 2067 | 711 | 395 (56%) | 316 (44%) | |||
S2 (R1) | O4o2 | 1650 | 526 | 228 (43%) | 298 (57%) | |||
Between species comparisons (sexual) | ||||||||
S1 (R1) | L. auriculifolium (a) [Sexual] | S1 (R1) | O1a1 | 616 | 200 | 34 (17%) | 166 (83%) | |
S2 (R1) | S2 (R1) | O2a2 | 1242 | 367 | 273 (74%) | 94 (26%) | ||
S3/S4 (R1) | S3/S4 (R1) | O4a4 | 1611 | 550 | 257 (47%) | 293 (53%) |
Reproduction | Species | Stages | ||
---|---|---|---|---|
S1 | S2 | S3/S4 | ||
Apomictic | L. multiflorum (M) | 933936 | 115775 | - |
Facultative apomictic | L. dodartii (d) | - | - | 103,345 |
Sexual | L. auriculifolium (A/a) | 60,143 | 48,851 | 61,550 |
L. ovalifolium (O/o) | 67,207 | 76,395 | 20,133 |
Gene ID | Gene Name | Protein Name | Log2FC | ||||||
---|---|---|---|---|---|---|---|---|---|
M1a1 | M1a2 | M1o1 | M1o2 | M2a4 | M2o4 | M2d4 | |||
TRINITY_DN12562_c0_g1 | A1 | Elongation factor 1-α | 10.09 | ||||||
TRINITY_DN9323_c2_g1 | ACR11 | ACT domain-containing protein ACR11 | 7.81 | ||||||
TRINITY_DN594_c3_g1 | ACT1 | Actin-1 | 7.09 | ||||||
TRINITY_DN3478_c1_g1 | ACT11 | Actin-11 | −4.39 | −2.32 | |||||
TRINITY_DN13623_c0_g1 | EXPA11 | Expansin-A11 | −5.35 | −5.85 | |||||
TRINITY_DN2256_c1_g1 | EXPA13 | Expansin-A13 | −2.28 | −2.07 | −2.17 | −3.78 | |||
TRINITY_DN27728_c0_g1 | EXPA15 | Expansin-A15 | 6,5 | ||||||
TRINITY_DN151736_c0_g1 | EXPA16 | Expansin-A16 | −4.77 | −2.4 | −2.06 | ||||
TRINITY_DN12567_c0_g1 | EXPA20 | Expansin-A20 | −2.08 | 7.23 | |||||
TRINITY_DN21891_c0_g1 | EXPA6 | Expansin-A6 | −2.41 | −2.42 | |||||
TRINITY_DN5240_c0_g1 | EXPA8 | Expansin-A8 | −5.09 | −3.65 | −3.79 | −4.76 | −2.76 | −3.16 | |
TRINITY_DN10654_c0_g1 | GAPC1 | Glyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic | 8.03 | 2.95 | |||||
TRINITY_DN10775_c0_g1 | GAPC2 | Glyceraldehyde-3-phosphate dehydrogenase GAPC2, cytosolic | −2.67 | −2.02 | |||||
TRINITY_DN638_c0_g1 | HSP90-6 | Heat shock protein 90-6, mitochondrial | 9.87 | ||||||
TRINITY_DN28088_c0_g2 | RALFL19 | Probable ubiquitin-conjugating enzyme E2 24 | −7.67 | −4.99 | −4.97 | −7.43 | −4.92 | −4.37 | |
TRINITY_DN521_c0_g6 | TUBB5 | Tubulin β-5 chain | −2.46 | −3.5 | |||||
TRINITY_DN159888_c0_g1 | TUBB6 | Tubulin β-6 chain | −2.58 | −2.21 | |||||
TRINITY_DN2826_c0_g1 | TUBB8 | Tubulin β-8 chain | 11.41 | ||||||
TRINITY_DN2332_c0_g1 | TUBB9 | Tubulin β-9 chain | 8.91 | ||||||
TRINITY_DN6957_c0_g1 | UBC10 | Ubiquitin-conjugating enzyme E2 10 | 8.36 | ||||||
TRINITY_DN193932_c0_g1 | UBC11 | Ubiquitin-conjugating enzyme E2 11 | 6.39 | 2.72 | |||||
TRINITY_DN184540_c0_g1 | UBC19 | Ubiquitin-conjugating enzyme E2 19 | −3.31 | −3.22 | −3.64 | ||||
TRINITY_DN6909_c0_g1 | UBC29 | Ubiquitin-conjugating enzyme E2 29 | 3.03 | 2.14 | 3.94 | 4.14 | 14.61 | ||
TRINITY_DN2966_c0_g1 | UBC33 | Probable ubiquitin-conjugating enzyme E2 33 | 2.1 | 5.58 | 9.74 | ||||
TRINITY_DN43968_c0_g1 | UBC35 | Ubiquitin-conjugating enzyme E2 35 | 3.13 | 6.36 | |||||
TRINITY_DN10935_c1_g1 | UBC4 | Ubiquitin-conjugating enzyme E2 4 | 7.32 | ||||||
TRINITY_DN10551_c0_g1 | UBC8 | Ubiquitin-conjugating enzyme E2 8 | 2.06 | 2.34 | 6.99 |
Gene ID | Gene Name | Protein Name | Log2FC | |||||
---|---|---|---|---|---|---|---|---|
M1a1 | M1a2 | M1o1 | M1o2 | M2a4 | M2o4 | |||
TRINITY_DN28291_c0_g2 | AGL15 | Agamous-like MADS-box protein AGL15 | −4.08 | 7.12 | ||||
TRINITY_DN13295_c0_g1 | AGL16 | Agamous-like MADS-box protein AGL16 | 2.14 | 2.21 | 9.13 | |||
TRINITY_DN610_c1_g1 | AGL42 | MADS-box protein AGL42 | 2.15 | |||||
TRINITY_DN2793_c0_g2 | AGL6 | Agamous-like MADS-box protein AGL6 | 7.9 | |||||
TRINITY_DN3873_c0_g1 | AGL65 | Agamous-like MADS-box protein AGL65 | −2.29 | −2.62 | −3.28 | |||
TRINITY_DN12180_c0_g1 | AGL66 | Agamous-like MADS-box protein AGL66 | −4.72 | −3.81 | ||||
TRINITY_DN342_c0_g2 | AGL8 | Agamous-like MADS-box protein AGL8 | 4.02 | 2.86 | 4.34 | 2.59 | 6.91 | |
TRINITY_DN72066_c0_g2 | ANR1 | MADS-box transcription factor ANR1 | 6.03 | |||||
TRINITY_DN9027_c0_g3 | AP1 | Floral homeotic protein APETALA 1 | −7.1 | −7.24 | −7.17 | −6.32 | ||
TRINITY_DN2754_c0_g1 | AP2 | Floral homeotic protein APETALA 2 | 2.14 | |||||
TRINITY_DN7779_c0_g1 | AP3 | Floral homeotic protein APETALA 3 | −8.66 | −6.05 | −6.98 | −8.55 | −4.17 | −3.22 |
TRINITY_DN46144_c0_g1 | ATH1 | Homeobox protein ATH1 | 3 | 7.07 | ||||
TRINITY_DN27333_c1_g1 | BLH8 | BEL1-like homeodomain protein 8 | 7.15 | |||||
TRINITY_DN1609_c0_g1 | BRI1 | Protein BRASSINOSTEROID INSENSITIVE 1 | −2.45 | −2.2 | ||||
TRINITY_DN17115_c0_g1 | CCA1 | Protein CCA1 | 7.18 | |||||
TRINITY_DN11983_c0_g1 | CDF2 | Cyclic dof factor 2 | 2.81 | |||||
TRINITY_DN2531_c1_g2 | COL5 | Zinc finger protein CONSTANS-LIKE 5 | 2.15 | 2.71 | 2.27 | |||
TRINITY_DN26110_c0_g1 | CSTF77 | Cleavage stimulation factor subunit 77 | 2.13 | |||||
TRINITY_DN22923_c0_g1 | ELF6 | Probable lysine-specific demethylase ELF6 | 5.1 | |||||
TRINITY_DN3347_c0_g1 | EMF2 | Polycomb group protein EMBRYONIC FLOWER 2 | 2.89 | |||||
TRINITY_DN7896_c0_g2 | FLC | MADS-box protein FLOWERING LOCUS C | 8.63 | |||||
TRINITY_DN5378_c0_g1 | FPA | Flowering time control protein FPA | 3.27 | |||||
TRINITY_DN184585_c0_g1 | FPF1 | Flowering-promoting factor 1 | 2.72 | 2.94 | 3.9 | 2.94 | 3.58 | |
TRINITY_DN7899_c0_g1 | FT | Protein FLOWERING LOCUS T | 2.06 | 2.37 | ||||
TRINITY_DN344_c1_g2 | GA2 | Ent-kaur-16-ene synthase, chloroplastic | 3.21 | 7.82 | ||||
TRINITY_DN2317_c0_g2 | GA2OX6 | Gibberellin 2-β-dioxygenase 6 | 3.87 | 3.85 | 3.72 | 11.51 | ||
TRINITY_DN38605_c0_g1 | GA2OX8 | Gibberellin 2-β-dioxygenase 8 | −4,06 | |||||
TRINITY_DN13033_c0_g1 | GA3OX1 | Gibberellin 3-β-dioxygenase 1 | 2.87 | 8 | ||||
TRINITY_DN8333_c0_g1 | GA3OX2 | Gibberellin 3-β-dioxygenase 2 | 11.4 | |||||
TRINITY_DN17736_c0_g1 | GASA1 | Gibberellin-regulated protein 1 | 4.81 | 2.37 | 2.98 | 5.17 | ||
TRINITY_DN10114_c0_g1 | GASA11 | Gibberellin-regulated protein 11 | 2.56 | 2.1 | 2.79 | 2.59 | 9.79 | |
TRINITY_DN31284_c0_g1 | GASA14 | Gibberellin-regulated protein 14 | −2.5 | −4.11 | ||||
TRINITY_DN185389_c0_g1 | GASA3 | Gibberellin-regulated protein 3 | −5.19 | −4.01 | ||||
TRINITY_DN5658_c0_g1 | GASA6 | Gibberellin-regulated protein 6 | −4.47 | −2.13 | −2.06 | −4.55 | −4.83 | −5.73 |
TRINITY_DN1467_c0_g1 | GASA7 | Gibberellin-regulated protein 7 | −7.76 | −6.05 | −7.43 | −7.99 | −4.99 | −4.24 |
TRINITY_DN8938_c0_g1 | GASA9 | Gibberellin-regulated protein 9 | −2.47 | −2.33 | −2.99 | |||
TRINITY_DN21137_c0_g1 | GID1C | Gibberellin receptor GID1C | 2.77 | 7.5 | ||||
TRINITY_DN37680_c0_g1 | JMJ14 | Probable lysine-specific demethylase JMJ14 | 11.2 | |||||
TRINITY_DN7266_c0_g2 | LD | Homeobox protein LUMINIDEPENDENS | 2.16 | 2.68 | 3.09 | 7.25 | ||
TRINITY_DN6935_c0_g1 | MSI4 | WD-40 repeat-containing protein MSI4 | 10.21 | |||||
TRINITY_DN34495_c0_g1 | NFYB2 | Nuclear transcription factor Y subunit B-2 | 2.4 | 2.58 | 2.59 | |||
TRINITY_DN18038_c0_g1 | NFYB3 | Nuclear transcription factor Y subunit B-3 | 2.17 | 8.27 | ||||
TRINITY_DN35701_c0_g2 | NFYC1 | Nuclear transcription factor Y subunit C-1 | 2.59 | |||||
TRINITY_DN1267_c0_g1 | PEX4 | Pollen-specific leucine-rich repeat extensin-like protein 4 | −8.5 | −5.05 | −5.26 | −8.04 | −4.31 | −3.62 |
TRINITY_DN6353_c0_g1 | PHYA | Phytochrome A | 2.15 | 2.39 | ||||
TRINITY_DN21387_c0_g1 | PHYB | Phytochrome B | −2.28 | |||||
TRINITY_DN7954_c0_g1 | PI | Floral homeotic protein PISTILLATA | −8.44 | −6.51 | −7.06 | −8.3 | −3.54 | −3.36 |
TRINITY_DN12744_c0_g2 | SEP1 | Developmental protein SEPALLATA 1 | −7.94 | −7.09 | −7.56 | −8.08 | −2.8 | |
TRINITY_DN31040_c0_g1 | SEP3 | Developmental protein SEPALLATA 3 | −2.37 | |||||
TRINITY_DN2251_c0_g1 | SOC1 | MADS-box protein SOC1 | 4.05 | 2.9 | 3.46 | 3.1 | 2.6 | 12.47 |
TRINITY_DN6192_c0_g1 | SPL15 | Squamosa promoter-binding-like protein 15 | 10.17 | |||||
TRINITY_DN6705_c0_g1 | SPL3 | Squamosa promoter-binding-like protein 3 | −3.84 | −3.38 | −4.54 | −2.82 | ||
TRINITY_DN14821_c0_g1 | SPL4 | Squamosa promoter-binding-like protein 4 | −3.38 | −2.18 | ||||
TRINITY_DN57302_c0_g1 | SRF6 | Protein STRUBBELIG-RECEPTOR FAMILY 6 | −4.07 | −3.28 | −4.01 | −3.91 | ||
TRINITY_DN46547_c0_g1 | SRF8 | Protein STRUBBELIG-RECEPTOR FAMILY 8 | 7.42 | |||||
TRINITY_DN2130_c0_g1 | SRR1 | Protein SENSITIVITY TO RED LIGHT REDUCED 1 | 12.09 | |||||
TRINITY_DN29363_c0_g1 | SVP | MADS-box protein SVP | −3.8 | |||||
TRINITY_DN5406_c1_g1 | UBC1 | Ubiquitin-conjugating enzyme E2 1 | 7.86 | |||||
TRINITY_DN16649_c0_g1 | ULT1 | Protein ULTRAPETALA 1 | −2.18 | |||||
TRINITY_DN13113_c0_g1 | VRN1 | B3 domain-containing transcription factor VRN1 | −3.2 | −2.14 | −2.41 | −2.73 | ||
TRINITY_DN8011_c0_g1 | WNK1 | Serine/threonine-protein kinase WNK1 | 8.81 |
Gene ID | Gene Name | Protein Name | Log2FC | ||||||
---|---|---|---|---|---|---|---|---|---|
M1a1 | M1a2 | M1o1 | M1o2 | M2a4 | M2o4 | M2d4 | |||
Aminoacyl-tRNA | |||||||||
TRINITY_DN2761_c0_g1 | AO | L-aspartate oxidase, chloroplastic | 2.11 | 2.61 | |||||
TRINITY_DN4987_c0_g1 | EDD1 | Glycine--tRNA ligase, chloroplastic/mitochondrial 2 | 12.19 | ||||||
TRINITY_DN157005_c0_g1 | GDH2 | Glycine cleavage system H protein 2, mitochondrial | −3.49 | −2.94 | −2.46 | −2.49 | −2.5 | ||
TRINITY_DN2155_c4_g1 | GLDP1 | Glycine dehydrogenase (decarboxylating) 1, mitochondrial | 2.29 | ||||||
TRINITY_DN10603_c0_g1 | GLDP2 | Glycine dehydrogenase (decarboxylating) 2, mitochondrial | 4.14 | 7.09 | |||||
TRINITY_DN2985_c0_g1 | GRDP2 | Glycine-rich domain-containing protein 2 | −2.18 | ||||||
TRINITY_DN6537_c0_g1 | PSS1 | CDP-diacylglycerol--serine O-phosphatidyltransferase 1 | 9.39 | ||||||
TRINITY_DN20064_c0_g1 | RBG3 | Glycine-rich RNA-binding protein 3, mitochondrial | −2.44 | ||||||
TRINITY_DN8570_c0_g1 | RBG4 | Glycine-rich RNA-binding protein 4, mitochondrial | 3.75 | 8.48 | |||||
TRINITY_DN8373_c0_g1 | RBG5 | Glycine-rich RNA-binding protein 5, mitochondrial | 9.41 | ||||||
TRINITY_DN27069_c0_g1 | RZ1A | Glycine-rich RNA-binding protein RZ1A | 2.24 | ||||||
TRINITY_DN14144_c0_g1 | UGLYAH | (S)-ureidoglycine aminohydrolase | 2.79 | 2.01 | 3.21 | 7.94 | |||
Ethylene | |||||||||
TRINITY_DN15258_c0_g1 | AIL5 | AP2-like ethylene-responsive transcription factor AIL5 | −2.78 | −3.27 | −3.23 | −2.23 | 8.8 | ||
TRINITY_DN51613_c0_g1 | ANT | AP2-like ethylene-responsive transcription factor ANT | 6.87 | ||||||
TRINITY_DN13736_c0_g1 | CRF2 | Ethylene-responsive transcription factor CRF2 | −3.02 | −2.65 | |||||
TRINITY_DN68_c0_g2 | EIN2 | Ethylene-insensitive protein 2 | 2.15 | 2.3 | 11.11 | ||||
TRINITY_DN2468_c0_g1 | ERF010 | Ethylene-responsive transcription factor ERF010 | 3.25 | ||||||
TRINITY_DN9993_c0_g1 | ERF014 | Ethylene-responsive transcription factor ERF014 | −2.01 | ||||||
TRINITY_DN1685_c1_g1 | ERF018 | Ethylene-responsive transcription factor ERF018 | 2.98 | 3.3 | 3.09 | 2.52 | |||
TRINITY_DN18951_c0_g1 | ERF034 | Ethylene-responsive transcription factor ERF034 | −3.47 | ||||||
TRINITY_DN7978_c0_g2 | ERF054 | Ethylene-responsive transcription factor ERF054 | 3.29 | 3.21 | 4.29 | 3.91 | 10.81 | ||
TRINITY_DN455_c0_g2 | ERF061 | Ethylene-responsive transcription factor ERF061 | 2.36 | 10.86 | |||||
TRINITY_DN74944_c0_g3 | ERF071 | Ethylene-responsive transcription factor ERF071 | −2.59 | ||||||
TRINITY_DN2504_c1_g1 | ERF109 | Ethylene-responsive transcription factor ERF109 | 2.63 | 3.22 | 4.14 | 10.25 | |||
TRINITY_DN12655_c0_g1 | ERF114 | Ethylene-responsive transcription factor ERF114 | 9.96 | ||||||
TRINITY_DN40207_c0_g1 | ERF118 | Ethylene-responsive transcription factor ERF118 | −2.01 | ||||||
TRINITY_DN15135_c0_g1 | ERF1A | Ethylene-responsive transcription factor 1A | 11.43 | ||||||
TRINITY_DN5700_c2_g1 | ERF2 | Ethylene-responsive transcription factor 2 | 2.19 | 10.77 | |||||
TRINITY_DN10435_c0_g1 | ERF5 | Ethylene-responsive transcription factor 5 | 7.93 | 7.95 | 7.89 | ||||
TRINITY_DN4039_c0_g2 | ERF9 | Ethylene-responsive transcription factor 9 | 2.46 | ||||||
TRINITY_DN9095_c0_g1 | ERS1 | Ethylene response sensor 1 | 9.71 | ||||||
TRINITY_DN2665_c0_g1 | RAP2-13 | Ethylene-responsive transcription factor RAP2-13 | 10.11 | ||||||
TRINITY_DN40774_c0_g3 | RAP2-3 | Ethylene-responsive transcription factor RAP2-3 | −5.92 | −4.04 | −5.69 | −5.82 | −2.5 | ||
TRINITY_DN1497_c0_g1 | RAP2-4 | Ethylene-responsive transcription factor RAP2-4 | 4.08 | ||||||
TRINITY_DN2_c1_g1 | RAP2-6 | Ethylene-responsive transcription factor RAP2-6 | 2.25 | 2.3 | 2.41 | 11.76 | |||
TRINITY_DN12350_c0_g1 | RAP2-7 | Ethylene-responsive transcription factor RAP2-7 | 6.43 | 4.91 | 6.54 | 4.61 | 4.12 | 9.24 | |
TRINITY_DN5947_c0_g1 | RTE1 | Protein REVERSION-TO-ETHYLENE SENSITIVITY1 | 10.91 | ||||||
TRINITY_DN29694_c0_g1 | SHN3 | Ethylene-responsive transcription factor SHINE 3 | −3.72 | −3.93 | |||||
TRINITY_DN4330_c3_g1 | TINY | Ethylene-responsive transcription factor TINY | 9.64 | ||||||
TRINITY_DN148_c3_g1 | WRI1 | Ethylene-responsive transcription factor WRI1 | −2.13 | −2.63 | |||||
TRINITY_DN5382_c0_g1 | AT4G13040 | Ethylene-responsive transcription factor-like protein At4g13040 | 9.5 | ||||||
Lysine | |||||||||
TRINITY_DN6270_c0_g1 | AATL1 | Lysine histidine transporter-like 8 | 2.04 | ||||||
TRINITY_DN8133_c0_g1 | ASHR1 | Histone-lysine N-methyltransferase ASHR1 | 10.07 | ||||||
TRINITY_DN4218_c0_g3 | ATX2 | Histone-lysine N-methyltransferase ATX2 | 7.65 | −3.53 | |||||
TRINITY_DN3010_c0_g1 | ATX4 | Histone-lysine N-methyltransferase ATX4 | 11.71 | ||||||
TRINITY_DN209_c0_g2 | ATX5 | Histone-lysine N-methyltransferase ATX5 | 7.64 | 7.46 | |||||
TRINITY_DN1076_c0_g1 | ATXR2 | Histone-lysine N-methyltransferase ATXR2 | 10.78 | ||||||
TRINITY_DN1656_c0_g1 | ATXR3 | Histone-lysine N-methyltransferase ATXR3 | 2.13 | ||||||
TRINITY_DN11945_c0_g1 | ATXR4 | Histone-lysine N-methyltransferase ATXR4 | 9.06 | ||||||
TRINITY_DN15991_c0_g1 | ATXR5 | Histone-lysine N-methyltransferase ATXR5 | −3.1 | 6.81 | |||||
TRINITY_DN22923_c0_g1 | ELF6 | Probable lysine-specific demethylase ELF6 | 5.1 | ||||||
TRINITY_DN6877_c1_g1 | EMB3003 | Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex. chloroplastic | −2.46 | ||||||
TRINITY_DN14929_c0_g1 | EZA1 | Histone-lysine N-methyltransferase EZA1 | 2.92 | ||||||
TRINITY_DN37680_c0_g1 | JMJ14 | Probable lysine-specific demethylase JMJ14 | 11.2 | ||||||
TRINITY_DN3464_c0_g3 | JMJ25 | Lysine-specific demethylase JMJ25 | 8.39 | ||||||
TRINITY_DN3267_c0_g1 | JMJ30 | Lysine-specific demethylase JMJ30 | −2.4 | −2.16 | 9.65 | ||||
TRINITY_DN1796_c2_g1 | LHT1 | Lysine histidine transporter 1 | 4.61 | 3.22 | 2.51 | 3.81 | 4.38 | 10.07 | |
TRINITY_DN1796_c0_g3 | LHT2 | Lysine histidine transporter 2 | 9.7 | ||||||
TRINITY_DN6877_c1_g2 | LTA2 | Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex. chloroplastic | −2.23 | ||||||
TRINITY_DN92_c0_g1 | OVA5 | Lysine--tRNA ligase. chloroplastic/mitochondrial | 2.08 | ||||||
TRINITY_DN22984_c0_g1 | SUVH6 | Histone-lysine N-methyltransferase. H3 lysine-9 specific SUVH6 | −2.35 | 7.17 | |||||
TRINITY_DN393_c0_g2 | SUVH9 | Histone-lysine N-methyltransferase family member SUVH9 | 10.36 | ||||||
TRINITY_DN18492_c0_g1 | SUVR1 | Probable inactive histone-lysine N-methyltransferase SUVR1 | 10.33 | ||||||
TRINITY_DN10785_c0_g1 | SUVR3 | Histone-lysine N-methyltransferase SUVR3 | 7.14 | ||||||
TRINITY_DN27123_c0_g1 | SUVR4 | Histone-lysine N-methyltransferase SUVR4 | 9.46 | ||||||
TRINITY_DN22651_c0_g1 | AT1G25530 | Lysine histidine transporter-like 6 | 10.9 | 2.27 | |||||
TRINITY_DN21036_c0_g1 | AT4G26910 | Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2. mitochondrial | 9.63 | ||||||
TRINITY_DN1947_c0_g1 | AT5G55070 | Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1. mitochondrial | 9.52 | ||||||
TRINITY_DN971_c1_g3 | AT4G35180 | Lysine histidine transporter-like 7 | 8.3 | ||||||
TRINITY_DN40168_c0_g1 | AT3G11710 | Lysine--tRNA ligase. cytoplasmic | 7.18 | ||||||
Tryptophan | |||||||||
TRINITY_DN10705_c0_g1 | TAA1 | L-tryptophan--pyruvate aminotransferase 1 | 7.41 | ||||||
TRINITY_DN6324_c0_g2 | TAR2 | Tryptophan aminotransferase-related protein 2 | −4.07 | −2.65 | −3.72 | −4.13 | −3.64 | ||
TRINITY_DN18489_c0_g3 | TSB2 | Tryptophan synthase β chain 2. chloroplastic | 2.13 | 7.83 | |||||
TRINITY_DN257_c0_g2 | AT3G04600 | Tryptophan--tRNA ligase. cytoplasmic | 10.25 |
Gene ID | Gene Name | Protein Name | M1a1 | M1a2 | M1o1 | M1o2 | M2a4 | M2o4 | M2d4 |
---|---|---|---|---|---|---|---|---|---|
pollen development (GO:0009555) | |||||||||
TRINITY_DN5448_c0_g1 | NAS3 | Nicotianamine synthase 3 | −3.49 | −4.95 | −3.84 | −3.52 | |||
TRINITY_DN95402_c0_g1 | PS1 | FHA domain-containing protein PS1 | −2.61 | −2.08 | −2.42 | 8.49 | |||
TRINITY_DN38119_c0_g1 | KDSB | 3-deoxy-manno-octulosonate cytidylyltransferase, mitochondrial | 2.07 | ||||||
TRINITY_DN10816_c0_g1 | TMK3 | Receptor-like kinase TMK3 | −3.51 | −2.75 | −2.57 | −3.57 | |||
TRINITY_DN923_c0_g1 | CALS5 | Callose synthase 5 | −2.91 | −2.05 | −3.3 | −3.49 | |||
TRINITY_DN111580_c0_g2 | CYP73A5 | Trans-cinnamate 4-monooxygenase | 2.6 | 2.57 | 3.63 | 2.01 | |||
TRINITY_DN41226_c0_g1 | PAL1 | Phenylalanine ammonia-lyase 1 | −2.27 | −2.65 | −3.8 | ||||
TRINITY_DN2633_c0_g1 | CALS9 | Callose synthase 9 | 2.08 | 2.07 | 9.17 | ||||
TRINITY_DN1417_c2_g1 | FAB1B | 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B | 2.35 | 2.38 | 2.68 | 3.2 | |||
TRINITY_DN1233_c4_g1 | AT4G39110 | Probable receptor-like protein kinase At4g39110 | −8.01 | −4.86 | −4.65 | −7.56 | −4.44 | −3.74 | |
TRINITY_DN3115_c1_g1 | ATL73 | RING-H2 finger protein ATL73 | −2.87 | −2.93 | −2.79 | −2.45 | 8.09 | ||
TRINITY_DN6027_c0_g1 | LRP1 | Protein LATERAL ROOT PRIMORDIUM 1 | −2.64 | −2.92 | −2.65 | −2.47 | |||
TRINITY_DN5863_c0_g1 | LCB2A | Long chain base biosynthesis protein 2a | 2.81 | ||||||
TRINITY_DN7884_c0_g1 | XRI1 | Protein XRI1 | −4.22 | −3.9 | −2.9 | ||||
TRINITY_DN4445_c0_g1 | CEP1 | KDEL-tailed cysteine endopeptidase CEP1 | −6.27 | −7.42 | −6.31 | −5.23 | |||
TRINITY_DN8949_c0_g1 | SWEET13 | Bidirectional sugar transporter SWEET13 | −2.61 | −2.07 | −2.58 | ||||
TRINITY_DN10107_c0_g1 | ABCB25 | ABC transporter B family member 25, mitochondrial | 2.48 | 2.73 | 2.35 | 8.62 | |||
TRINITY_DN27954_c0_g3 | LECRK42 | L-type lectin-domain containing receptor kinase IV.2 | 3.43 | −2.54 | −3.02 | ||||
TRINITY_DN8056_c1_g1 | CALS11 | Callose synthase 11 | 3.3 | 3.44 | 3.29 | 8.01 | |||
TRINITY_DN4094_c0_g1 | NMT1 | Phosphoethanolamine N-methyltransferase 1 | 2.15 | 2.43 | |||||
TRINITY_DN17932_c0_g1 | WRKY2 | Probable WRKY transcription factor 2 | −2.02 | −2.22 | −2.23 | 7.15 | |||
TRINITY_DN12987_c0_g1 | PIN5 | Auxin efflux carrier component 5 | 2.41 | 10 | 3.48 | ||||
TRINITY_DN4445_c0_g1 | CEP1 | KDEL-tailed cysteine endopeptidase CEP1 | |||||||
TRINITY_DN5448_c0_g1 | NAS3 | Nicotianamine synthase 3 | |||||||
TRINITY_DN3873_c0_g1 | AGL65 | Agamous-like MADS-box protein AGL65 | −2.29 | −2.62 | −3.28 | ||||
TRINITY_DN47156_c0_g1 | IPK2B | Inositol polyphosphate multikinase β | 3.28 | 7.44 | |||||
TRINITY_DN2407_c1_g1 | BZIP34 | Basic leucine zipper 34 | −5.18 | −2.68 | |||||
TRINITY_DN12180_c0_g1 | AGL66 | Agamous-like MADS-box protein AGL66 | −4.72 | −3.81 | |||||
TRINITY_DN15991_c0_g1 | ATXR5 | Histone-lysine N-methyltransferase ATXR5 | −3.1 | 6.81 | |||||
TRINITY_DN9971_c0_g1 | MYB80 | Transcription factor MYB80 | 4.46 | 8.63 | |||||
TRINITY_DN10584_c0_g1 | MCM7 | DNA replication licensing factor MCM7 | −2.04 | ||||||
TRINITY_DN5641_c0_g1 | LOX3 | Lipoxygenase 3, chloroplastic | 2.93 | 2.75 | |||||
TRINITY_DN23341_c0_g1 | D6PKL3 | Serine/threonine-protein kinase D6PKL3 | 2.16 | 8.44 | |||||
TRINITY_DN11273_c0_g1 | MCM4 | DNA replication licensing factor MCM4 | −4.4 | ||||||
TRINITY_DN440_c0_g1 | MCM8 | Probable DNA helicase MCM8 | 12.61 | ||||||
TRINITY_DN3132_c0_g1 | PGDH1 | D-3-phosphoglycerate dehydrogenase 1, chloroplastic | 11.73 | ||||||
TRINITY_DN12133_c0_g1 | MRS2-2 | Magnesium transporter MRS2-2 | 11.26 | ||||||
TRINITY_DN7153_c0_g1 | APD2 | E3 ubiquitin-protein ligase APD2 | 11.16 | ||||||
TRINITY_DN4731_c0_g3 | MYB101 | Transcription factor MYB101 | 11.05 | ||||||
TRINITY_DN1371_c0_g1 | RGTB1 | Geranylgeranyl transferase type-2 subunit β 1 | 11.03 | ||||||
TRINITY_DN2976_c0_g1 | AT2G21870 | Probable ATP synthase 24 kDa subunit. mitochondrial | 9.59 | ||||||
TRINITY_DN11362_c1_g1 | WRKY35 | Probable WRKY transcription factor 35 | 9.53 | ||||||
TRINITY_DN166676_c0_g1 | CER26L | Protein ECERIFERUM 26-like | 9.43 | ||||||
TRINITY_DN9251_c0_g1 | FAS1 | Chromatin assembly factor 1 subunit FAS1 | 9.15 | ||||||
TRINITY_DN17928_c0_g2 | CYP94B3 | Cytochrome P450 94B3 | −2.3 | ||||||
TRINITY_DN1593_c0_g1 | DSE1 | Protein DECREASED SIZE EXCLUSION LIMIT 1 | 3.87 | ||||||
TRINITY_DN41732_c1_g1 | GAPCP1 | Glyceraldehyde-3-phosphate dehydrogenase GAPCP1, chloroplastic | −2.38 | ||||||
TRINITY_DN968_c1_g1 | CDKA-1 | Cyclin-dependent kinase A-1 | 8.61 | ||||||
TRINITY_DN114534_c0_g1 | LCB2B | Long chain base biosynthesis protein 2b | 8.44 | ||||||
TRINITY_DN39521_c0_g1 | RUK | Serine/threonine-protein kinase RUNKEL | 8.41 | ||||||
TRINITY_DN30938_c0_g1 | XPO1 | Protein EXPORTIN 1A | 2.82 | ||||||
TRINITY_DN54834_c0_g2 | KIN7A | Kinesin-like protein KIN-7A | 7.81 | ||||||
TRINITY_DN29594_c0_g1 | PTD | Protein PARTING DANCERS | 7.27 | ||||||
TRINITY_DN3033_c0_g4 | P5CSA | Delta-1-pyrroline-5-carboxylate synthase A | 2.7 | ||||||
TRINITY_DN31412_c0_g1 | RGP1 | UDP-arabinopyranose mutase 1 | 7.16 | ||||||
TRINITY_DN14808_c0_g1 | RTEL1 | Regulator of telomere elongation helicase 1 homolog | 6.99 | ||||||
TRINITY_DN49207_c0_g1 | SRS1 | Protein SHI RELATED SEQUENCE 1 | 6.96 | ||||||
TRINITY_DN29704_c0_g5 | SRS5 | Protein SHI RELATED SEQUENCE 5 | 6.81 | ||||||
TRINITY_DN9646_c0_g1 | ATRX | Protein CHROMATIN REMODELING 20 | 2.32 | ||||||
TRINITY_DN21539_c0_g1 | BHLH91 | Transcription factor bHLH91 | 6.74 | ||||||
TRINITY_DN826_c0_g2 | TULP7 | Tubby-like F-box protein 7 | 2.15 | ||||||
TRINITY_DN4508_c0_g1 | MPK4 | Mitogen-activated protein kinase 4 | 2.09 | ||||||
TRINITY_DN161_c0_g2 | NEDD1 | Protein NEDD1 | 2.22 | ||||||
TRINITY_DN6156_c0_g1 | PKSA | Type III polyketide synthase A | −3.61 | −6.78 | −6.63 | −3.39 | −2.98 | ||
TRINITY_DN31801_c4_g1 | GPAT1 | Glycerol-3-phosphate acyltransferase 1 | −4.13 | −4.38 | |||||
TRINITY_DN17166_c0_g1 | 4CL3 | 4-coumarate--CoA ligase 3 | −4.44 | −2.69 | −4.06 | −3.78 | −2.43 | ||
TRINITY_DN16998_c0_g1 | ZAT2 | Zinc finger protein ZAT2 | −4.9 | −4.15 | |||||
TRINITY_DN15578_c0_g1 | LRL1 | Transcription factor LRL1 | −3.39 | 6.94 | |||||
TRINITY_DN4588_c0_g2 | ABCG31 | ABC transporter G family member 31 | −2.72 | −3.81 | −2.13 | −2.53 | −2.22 | 10.04 | |
TRINITY_DN45712_c0_g1 | FAR2 | Fatty acyl-CoA reductase 2, chloroplastic | −3.28 | −6.24 | −6.93 | −4.07 | −2.8 | ||
TRINITY_DN9952_c0_g1 | ABCG26 | ABC transporter G family member 26 | −3.28 | ||||||
TRINITY_DN15838_c0_g1 | TIP5-1 | Probable aquaporin TIP5-1 | −2.48 | −2.82 | 8.26 | ||||
TRINITY_DN6869_c0_g1 | A6 | Probable glucan endo-1,3-β-glucosidase A6 | −2.6 | −7.57 | −7.88 | −2.61 | −2.95 | ||
TRINITY_DN156774_c0_g1 | ABCG9 | ABC transporter G family member 9 | −2.19 | −3.86 | |||||
TRINITY_DN31379_c0_g1 | TKPR1 | Tetraketide α-pyrone reductase 1 | −4.21 | −4.43 | |||||
TRINITY_DN3196_c3_g1 | EMS1 | Leucine-rich repeat receptor protein kinase EMS1 | −2.05 | −2.34 | |||||
TRINITY_DN176325_c0_g1 | COPT1 | Copper transporter 1 | −3.79 | −3.86 | −3.99 | −3.76 | −2.12 | ||
TRINITY_DN4485_c0_g1 | CYP704B1 | Cytochrome P450 704B1 | −2.52 | ||||||
microsporogenesis (GO:0009556) | |||||||||
TRINITY_DN5204_c0_g1 | PLC2 | Phosphoinositide phospholipase C 2 | 3.07 | 2.44 | 3.37 | 2.07 | 3.53 | ||
TRINITY_DN3196_c3_g1 | EMS1 | Leucine-rich repeat receptor protein kinase EMS1 | −2.05 | −2.34 | |||||
TRINITY_DN6537_c0_g1 | PSS1 | CDP-diacylglycerol--serine O-phosphatidyltransferase 1 | 9.39 | ||||||
TRINITY_DN2003_c0_g1 | FH14 | Formin-like protein 14 | 2.33 | ||||||
pollen germination (GO:0009846) | |||||||||
TRINITY_DN373_c0_g1 | CSLD1 | Cellulose synthase-like protein D1 | −3.31 | −4.72 | −3.45 | −2.22 | |||
TRINITY_DN19056_c0_g1 | IP5P13 | Type I inositol polyphosphate 5-phosphatase 13 | −2.38 | −3.35 | −2.36 | ||||
TRINITY_DN4602_c0_g1 | JGB | Protein JINGUBANG | −4 | −4.06 | |||||
TRINITY_DN8465_c0_g1 | CSLD4 | Cellulose synthase-like protein D4 | −3.89 | −3.71 | |||||
TRINITY_DN46361_c0_g1 | PTF2 | Plant-specific TFIIB-related protein PTF2 | 9.36 | ||||||
TRINITY_DN19056_c0_g3 | IP5P12 | Type I inositol polyphosphate 5-phosphatase 12 | 6.94 | ||||||
pollination (GO:0009856) | |||||||||
TRINITY_DN6022_c0_g1 | ARPN | Basic blue protein | −5.23 | −3.65 | |||||
pollen tube growth (GO:0009860) | |||||||||
TRINITY_DN8457_c0_g3 | AT1G03010 | BTB/POZ domain-containing protein At1g03010 | −4.41 | −4.84 | −4.35 | −3.42 | 2.01 | ||
TRINITY_DN5849_c0_g1 | XI-E | Myosin-11 | 2.14 | 4.3 | 3.52 | 7.48 | |||
TRINITY_DN691_c0_g2 | ARAC5 | Rac-like GTP-binding protein ARAC5 | −3.62 | −2.02 | −2.9 | −3.64 | −2.65 | ||
TRINITY_DN11455_c0_g1 | CBL1 | Calcineurin B-like protein 1 | 2.24 | 4.42 | |||||
TRINITY_DN1267_c0_g1 | PEX4 | Pollen-specific leucine-rich repeat extensin-like protein 4 | −8.5 | −5.05 | −5.26 | −8.04 | −4.31 | −3.62 | |
TRINITY_DN677_c0_g2 | NPF8.2 | Protein NRT1/PTR FAMILY 8,2 | −2.24 | −2.05 | −2.36 | −2.43 | |||
TRINITY_DN7934_c0_g1 | ABCG28 | ABC transporter G family member 28 | −2.78 | −3.68 | −4.42 | 7.31 | |||
TRINITY_DN5923_c0_g1 | OASA1 | Cysteine synthase 1 | 2.1 | 2.13 | 9.71 | ||||
TRINITY_DN8399_c0_g1 | RIC5 | CRIB domain-containing protein RIC5 | −4.82 | −4.6 | |||||
TRINITY_DN8450_c0_g1 | PPME1 | Pectinesterase PPME1 | −4.77 | ||||||
TRINITY_DN5260_c2_g1 | PEX1 | Pollen-specific leucine-rich repeat extensin-like protein 1 | −4.49 | −3.64 | |||||
TRINITY_DN16608_c0_g2 | RIC6 | CRIB domain-containing protein RIC6 | −4.2 | −3.93 | |||||
TRINITY_DN184921_c0_g1 | AGC1-5 | Serine/threonine-protein kinase AGC1-5 | −4.13 | ||||||
TRINITY_DN35118_c0_g1 | CNGC18 | Cyclic nucleotide-gated ion channel 18 | −3.97 | 6.14 | |||||
TRINITY_DN14636_c1_g1 | CNGC7 | Putative cyclic nucleotide-gated ion channel 7 | −3.93 | −4.53 | |||||
TRINITY_DN15772_c0_g3 | CXE18 | Probable carboxylesterase 18 | −3.71 | ||||||
TRINITY_DN8917_c0_g2 | TOPP8 | Serine/threonine-protein phosphatase PP1 isozyme 8 | −3.98 | ||||||
TRINITY_DN12354_c0_g2 | KLCR2 | Protein KINESIN LIGHT CHAIN-RELATED 2 | −3.52 | −3.57 | |||||
TRINITY_DN43059_c0_g1 | TCTP1 | Translationally-controlled tumor protein 1 | −2.39 | 6.64 | |||||
TRINITY_DN145_c0_g1 | AT2G41970 | Probable protein kinase At2g41970 | −2.03 | ||||||
TRINITY_DN8899_c0_g3 | ARAC11 | Rac-like GTP-binding protein ARAC11 | −2 | ||||||
TRINITY_DN3041_c0_g3 | CDI | Protein CDI | 11.87 | ||||||
TRINITY_DN10453_c0_g1 | AGC1-7 | Serine/threonine-protein kinase AGC1-7 | 11.84 | ||||||
TRINITY_DN7093_c0_g1 | PIGA | Phosphatidylinositol N-acetylglucosaminyltransferase subunit A | 10.57 | ||||||
TRINITY_DN1136_c1_g1 | FIM5 | Fimbrin-5 | 10.5 | ||||||
TRINITY_DN17922_c0_g2 | WIP2 | Zinc finger protein WIP2 | −2.58 | ||||||
TRINITY_DN6837_c0_g1 | XI-C | Myosin-9 | 9.53 | ||||||
TRINITY_DN9379_c0_g1 | SBT3.1 | Subtilisin-like protease SBT3.1 | −2.11 | ||||||
TRINITY_DN12065_c0_g1 | MIRO1 | Mitochondrial Rho GTPase 1 | 8.43 | ||||||
pollen tube adhesion (GO:0009865) | |||||||||
TRINITY_DN14184_c0_g1 | HS1 | Stress-response A/B barrel domain-containing protein HS1 | −3.03 | −2.2 | −2.58 | −2.22 | |||
pollen-pistil interaction (GO:0009875) | |||||||||
TRINITY_DN2016_c0_g1 | MPK3 | Mitogen-activated protein kinase 3 | 2.1 | 2.21 | 4.22 | ||||
TRINITY_DN4521_c0_g1 | MAA3 | Probable helicase MAGATAMA 3 | 12.13 | ||||||
TRINITY_DN14556_c0_g1 | MKK9 | Mitogen-activated protein kinase kinase 9 | 9.61 | ||||||
pollen maturation (GO:0010152) | |||||||||
TRINITY_DN8479_c0_g1 | DRP1C | Dynamin-related protein 1C | 13.13 | ||||||
TRINITY_DN13085_c0_g1 | AFB2 | Protein AUXIN SIGNALING F-BOX 2 | 9.73 | ||||||
TRINITY_DN6009_c0_g1 | RPK2 | LRR receptor-like serine/threonine-protein kinase RPK2 | 3.81 | ||||||
TRINITY_DN3540_c1_g1 | PDR2 | Probable manganese-transporting ATPase PDR2 | 2.12 | ||||||
pollen tube guidance (GO:0010183) | |||||||||
TRINITY_DN6442_c0_g1 | A39 | Aspartic proteinase 39 | −2.79 | −3.46 | −3.7 | ||||
TRINITY_DN253_c1_g1 | COBL10 | COBRA-like protein 10 | −8.86 | −5.63 | −5.6 | −8.42 | −4.18 | ||
TRINITY_DN22116_c0_g1 | MIK2 | MDIS1-interacting receptor like kinase 2 | 2.62 | 8.29 | −2.01 | ||||
TRINITY_DN17193_c0_g1 | MIK1 | MDIS1-interacting receptor like kinase 1 | −4.33 | −3.54 | −3.34 | −4.58 | |||
TRINITY_DN253_c0_g2 | COBL11 | COBRA-like protein 11 | −4.68 | −3.27 | |||||
TRINITY_DN30272_c0_g1 | GEX3 | Protein GAMETE EXPRESSED 3 | −2.97 | ||||||
TRINITY_DN20396_c0_g1 | LIP2 | Receptor-like kinase LIP2 | 9.71 | ||||||
TRINITY_DN7012_c0_g1 | SIZ1 | E3 SUMO-protein ligase SIZ1 | 2.21 | ||||||
TRINITY_DN5591_c0_g1 | POD1 | Protein POLLEN DEFECTIVE IN GUIDANCE 1 | 2.11 | ||||||
pollen wall assembly (GO:0010208) | |||||||||
TRINITY_DN6156_c0_g1 | PKSA | Type III polyketide synthase A | −3.61 | −6.78 | −6.63 | −3.39 | −2.98 | ||
TRINITY_DN17166_c0_g1 | 4CL3 | 4-coumarate--CoA ligase 3 | −4.44 | −2.69 | −4.06 | −3.78 | −2.43 | ||
TRINITY_DN923_c0_g1 | CALS5 | Callose synthase 5 | −2.91 | −2.05 | −3.3 | −3.49 | |||
TRINITY_DN4588_c0_g2 | ABCG31 | ABC transporter G family member 31 | −2.72 | −3.81 | −2.13 | −2.53 | −2.22 | 10.04 | |
TRINITY_DN45712_c0_g1 | FAR2 | Fatty acyl-CoA reductase 2. chloroplastic | −3.28 | −6.24 | −6.93 | −4.07 | −2.8 | ||
TRINITY_DN9952_c0_g1 | ABCG26 | ABC transporter G family member 26 | −3.28 | ||||||
TRINITY_DN6869_c0_g1 | A6 | Probable glucan endo-1,3-β-glucosidase A6 | −2.6 | −7.57 | −7.88 | −2.61 | −2.95 | ||
TRINITY_DN31379_c0_g1 | TKPR1 | Tetraketide α-pyrone reductase 1 | −4.21 | −4.43 | |||||
TRINITY_DN156774_c0_g1 | ABCG9 | ABC transporter G family member 9 | −2.19 | −3.86 | |||||
TRINITY_DN3259_c0_g1 | AHL16 | AT-hook motif nuclear-localized protein 16 | 2.36 | 2.17 | 2.08 | 2.17 | |||
TRINITY_DN6293_c0_g2 | CYP703A2 | Cytochrome P450 703A2 | −3.11 | ||||||
TRINITY_DN4485_c0_g1 | CYP704B1 | Cytochrome P450 704B1 | −2.52 | ||||||
pollen tube reception (GO:0010483) | |||||||||
TRINITY_DN2319_c0_g2 | FER | Receptor-like protein kinase FERONIA | −3.33 | −2.02 | −2.9 | −2.85 | −3.99 | ||
TRINITY_DN1919_c0_g1 | EVN | Dolichol kinase EVAN | 3.02 | ||||||
pollen exine formation (GO:0010584) | |||||||||
TRINITY_DN6156_c0_g1 | PKSA | Type III polyketide synthase A | −3.61 | −6.78 | −6.63 | −3.39 | −2.98 | ||
TRINITY_DN17166_c0_g1 | 4CL3 | 4-coumarate--CoA ligase 3 | −4.44 | −2.69 | −4.06 | −3.78 | −2.43 | ||
TRINITY_DN45712_c0_g1 | FAR2 | Fatty acyl-CoA reductase 2. chloroplastic | −3.28 | −6.24 | −6.93 | −4.07 | −2.8 | ||
TRINITY_DN6869_c0_g1 | A6 | Probable glucan endo-1,3-β-glucosidase A6 | −2.6 | −7.57 | −7.88 | −2.61 | −2.95 | ||
TRINITY_DN4186_c0_g1 | QRT3 | Polygalacturonase QRT3 | −4.02 | −3.09 | −4.76 | −4.77 | |||
TRINITY_DN1609_c0_g1 | BRI1 | Protein BRASSINOSTEROID INSENSITIVE 1 | −2.45 | −2.2 | |||||
TRINITY_DN10341_c0_g1 | PKSB | Type III polyketide synthase B | −2.2 | ||||||
TRINITY_DN31379_c0_g1 | TKPR1 | Tetraketide α-pyrone reductase 1 | −4.21 | −4.43 | |||||
TRINITY_DN9952_c0_g1 | ABCG26 | ABC transporter G family member 26 | −3.28 | ||||||
TRINITY_DN6293_c0_g2 | CYP703A2 | Cytochrome P450 703A2 | −3.11 | ||||||
TRINITY_DN17210_c0_g1 | IRX9H | Probable β-1,4-xylosyltransferase IRX9H | 10.62 | ||||||
TRINITY_DN8740_c0_g1 | SHT | Spermidine hydroxycinnamoyl transferase | 9.57 | ||||||
TRINITY_DN4485_c0_g1 | CYP704B1 | Cytochrome P450 704B1 | −2.52 | ||||||
TRINITY_DN42106_c0_g1 | SSL13 | Protein STRICTOSIDINE SYNTHASE-LIKE 13 | 8.48 | ||||||
TRINITY_DN558_c0_g1 | CDKG1 | Cyclin-dependent kinase G1 | 3.14 | ||||||
TRINITY_DN53293_c1_g1 | TKPR2 | Tetraketide α-pyrone reductase 2 | 6.87 | ||||||
pollen sperm cell differentiation (GO:0048235) | |||||||||
TRINITY_DN176325_c0_g1 | COPT1 | Copper transporter 1 | −3.79 | −3.86 | −3.99 | −3.76 | −2.12 | ||
TRINITY_DN16998_c0_g1 | ZAT2 | Zinc finger protein ZAT2 | −4.9 | −4.15 | |||||
TRINITY_DN31801_c4_g1 | GPAT1 | Glycerol-3-phosphate acyltransferase 1 | −4.13 | −4.38 | |||||
TRINITY_DN40616_c0_g1 | QRT2 | Polygalacturonase QRT2 | 6.55 | −2.45 | |||||
recognition of pollen (GO:0048544) | |||||||||
TRINITY_DN10463_c0_g1 | SD129 | G-type lectin S-receptor-like serine/threonine-protein kinase SD1-29 | 3.45 | 3.42 | |||||
TRINITY_DN6512_c0_g1 | SD16 | Receptor-like serine/threonine-protein kinase SD1-6 | 2.13 | 2.14 | 2.61 | ||||
TRINITY_DN5252_c0_g2 | AT5G24080 | G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 | 2.26 | −2.9 | |||||
TRINITY_DN38630_c0_g1 | SD11 | G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 | −2.08 | 8.92 | |||||
TRINITY_DN2975_c0_g2 | SD18 | Receptor-like serine/threonine-protein kinase SD1-8 | −3.11 | ||||||
TRINITY_DN21172_c0_g1 | RDR6 | RNA-dependent RNA polymerase 6 | −2.18 | ||||||
TRINITY_DN10167_c0_g1 | AT5G03700 | PAN domain-containing protein At5g03700 | −2.38 | ||||||
TRINITY_DN151527_c0_g1 | AT4G27290 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 | 7.03 | ||||||
microsporocyte nucleus (GO:0048556) | |||||||||
TRINITY_DN42827_c0_g1 | ARID1 | AT-rich interactive domain-containing protein 1 | 10.37 | ||||||
pollen tube development (GO:0048868) | |||||||||
TRINITY_DN10227_c0_g2 | CSLC12 | Probable xyloglucan glycosyltransferase 12 | −5.27 | −3.31 | −4.36 | −5.35 | −3.3 | ||
TRINITY_DN2830_c0_g1 | EDA30 | Protein EMBRYO SAC DEVELOPMENT ARREST 30 | 11.59 | ||||||
TRINITY_DN16425_c0_g1 | LPPG | Lipid phosphate phosphatase γ | 11.3 | ||||||
TRINITY_DN1186_c1_g2 | KCS5 | 3-ketoacyl-CoA synthase 5 | −3.15 | ||||||
TRINITY_DN65496_c0_g1 | E1-β-2 | Pyruvate dehydrogenase E1 component subunit β-3, chloroplastic | 9.78 | ||||||
TRINITY_DN14636_c1_g1 | CNGC7 | Putative cyclic nucleotide-gated ion channel 7 | −3.93 | −4.53 | |||||
TRINITY_DN8450_c0_g1 | PPME1 | Pectinesterase PPME1 | −4.77 | ||||||
TRINITY_DN691_c0_g2 | ARAC5 | Rac-like GTP-binding protein ARAC5 | −3.62 | −2.02 | −2.9 | −3.64 | −2.65 | ||
TRINITY_DN5487_c0_g1 | ROPGEF12 | Rop guanine nucleotide exchange factor 12 | −5.33 | −2.79 | |||||
TRINITY_DN923_c0_g1 | CALS5 | Callose synthase 5 | −2.91 | −2.05 | −3.3 | −3.49 | |||
TRINITY_DN16608_c0_g2 | RIC6 | CRIB domain-containing protein RIC6 | −4.2 | −3.93 | |||||
TRINITY_DN145_c0_g1 | AT2G41970 | Probable protein kinase At2g41970 | −2.03 | ||||||
TRINITY_DN184921_c0_g1 | AGC1-5 | Serine/threonine-protein kinase AGC1-5 | −4.13 | ||||||
TRINITY_DN43059_c0_g1 | TCTP1 | Translationally-controlled tumor protein 1 | −2.39 | 6.64 | |||||
TRINITY_DN1241_c0_g1 | MGP4 | UDP-D-xylose:L-fucose α-1,3-D-xylosyltransferase MGP4 | 2.88 | ||||||
TRINITY_DN14184_c0_g1 | HS1 | Stress-response A/B barrel domain-containing protein HS1 | −3.03 | −2.2 | −2.58 | −2.22 | |||
TRINITY_DN5260_c2_g1 | PEX1 | Pollen-specific leucine-rich repeat extensin-like protein 1 | −4.49 | −3.64 | |||||
TRINITY_DN8399_c0_g1 | RIC5 | CRIB domain-containing protein RIC5 | −4.82 | −4.6 | |||||
TRINITY_DN12354_c0_g2 | KLCR2 | Protein KINESIN LIGHT CHAIN-RELATED 2 | −3.52 | −3.57 | |||||
TRINITY_DN8899_c0_g3 | ARAC11 | Rac-like GTP-binding protein ARAC11 | −2 | ||||||
TRINITY_DN17193_c0_g1 | MIK1 | MDIS1-interacting receptor like kinase 1 | −4.33 | −3.54 | −3.34 | −4.58 | |||
TRINITY_DN1267_c0_g1 | PEX4 | Pollen-specific leucine-rich repeat extensin-like protein 4 | −8.5 | −5.05 | −5.26 | −8.04 | −4.31 | −3.62 | |
TRINITY_DN35118_c0_g1 | CNGC18 | Cyclic nucleotide-gated ion channel 18 | −3.97 | 6.14 | |||||
TRINITY_DN30272_c0_g1 | GEX3 | Protein GAMETE EXPRESSED 3 | −2.97 | ||||||
TRINITY_DN15772_c0_g3 | CXE18 | Probable carboxylesterase 18 | −3.71 | ||||||
TRINITY_DN8917_c0_g2 | TOPP8 | Serine/threonine-protein phosphatase PP1 isozyme 8 | −3.98 | ||||||
microgametogenesis (GO:0055046) | |||||||||
TRINITY_DN3449_c0_g1 | PIRL3 | Plant intracellular Ras-group-related LRR protein 3 | 2.7 | 2.74 | 3.21 | 2.39 | |||
TRINITY_DN15578_c0_g1 | LRL1 | Transcription factor LRL1 | −3.39 | 6.94 | |||||
TRINITY_DN4115_c0_g1 | MYB35 | Transcription factor MYB35 | 10.32 | ||||||
TRINITY_DN593_c1_g2 | KIN12A | Kinesin-like protein KIN-12A | 8.1 | ||||||
TRINITY_DN7491_c0_g1 | AUG6 | AUGMIN subunit 6 | 2.54 | ||||||
rejection of self pollen (GO:0060320) | |||||||||
TRINITY_DN124729_c0_g1 | SPH5 | S-protein homolog 5 | −3.04 | ||||||
acceptance of pollen (GO:0060321) | |||||||||
TRINITY_DN12342_c0_g1 | SEC5A | Exocyst complex component SEC5A | 2.66 | ||||||
pollen coat (GO:0070505) | |||||||||
TRINITY_DN4588_c0_g2 | ABCG31 | ABC transporter G family member 31 | −2.72 | −3.81 | −2.13 | −2.53 | −2.22 | 10.04 | |
TRINITY_DN156774_c0_g1 | ABCG9 | ABC transporter G family member 9 | −2.19 | −3.86 | |||||
regulation of pollen tube growth (GO:0080092) | |||||||||
TRINITY_DN28088_c0_g2 | RALFL19 | Protein RALF-like 19 | −7.67 | −4.99 | −4.97 | −7.43 | −4.92 | −4.37 | |
TRINITY_DN6629_c0_g1 | PRK4 | Pollen receptor-like kinase 4 | −6.87 | −5.12 | −4.56 | −6.56 | −4.64 | −3.32 | |
TRINITY_DN5487_c0_g1 | ROPGEF12 | Rop guanine nucleotide exchange factor 12 | −5.33 | −2.79 | |||||
TRINITY_DN151480_c0_g1 | CPK24 | Calcium-dependent protein kinase 24 | −4.88 | −2.89 | |||||
TRINITY_DN8879_c0_g1 | CPK17 | Calcium-dependent protein kinase 17 | −4.85 | −2.86 | |||||
TRINITY_DN14172_c0_g1 | PRK3 | Pollen receptor-like kinase 3 | −3.48 | 6.87 | |||||
TRINITY_DN9330_c2_g1 | ROPGEF9 | Rop guanine nucleotide exchange factor 9 | −3.05 | ||||||
TRINITY_DN6638_c1_g2 | ROPGEF14 | Rop guanine nucleotide exchange factor 14 | −2.1 | ||||||
TRINITY_DN37662_c0_g1 | RABA4D | Ras-related protein RABA4d | 7.85 | ||||||
TRINITY_DN4047_c0_g1 | AT1G60420 | Probable nucleoredoxin 1 | 2.01 | ||||||
TRINITY_DN3873_c0_g1 | AGL65 | Agamous-like MADS-box protein AGL65 | −2.29 | −2.62 | −3.28 | ||||
TRINITY_DN12180_c0_g1 | AGL66 | Agamous-like MADS-box protein AGL66 | −4.72 | −3.81 | |||||
TRINITY_DN923_c0_g1 | CALS5 | Callose synthase 5 | −2.91 | −2.05 | −3.3 | −3.49 | |||
TRINITY_DN1233_c4_g1 | AT4G39110 | Probable receptor-like protein kinase At4g39110 | −8.01 | −4.86 | −4.65 | −7.56 | −4.44 | −3.74 | |
pollen tube tip (GO:0090404) | |||||||||
TRINITY_DN14105_c0_g1 | ALA3 | Phospholipid-transporting ATPase 3 | 2.51 | 3.12 | 10.21 | ||||
TRINITY_DN5561_c0_g1 | ANX2 | Receptor-like protein kinase ANXUR2 | −7.96 | −4.9 | −5.05 | −7.4 | −4.33 | −3.5 | |
pollen tube (GO:0090406) | |||||||||
TRINITY_DN41664_c0_g1 | ZAR1 | Receptor protein kinase-like protein ZAR1 | −2.54 | −2.17 | −2.01 | −2.43 | |||
TRINITY_DN6369_c0_g1 | PLT1 | Putative polyol transporter 1 | −2.03 | −2.04 | |||||
TRINITY_DN29983_c0_g1 | AT4G36180 | Probable LRR receptor-like serine/threonine-protein kinase At4g36180 | −3.9 | −2.83 | −4.51 | ||||
TRINITY_DN6280_c0_g1 | STP8 | Sugar transport protein 8 | −4.78 | −2.96 | −4.96 | −4.45 | 10.23 | ||
TRINITY_DN4295_c0_g1 | INT2 | Probable inositol transporter 2 | 2.38 | 2.79 | |||||
TRINITY_DN15838_c0_g1 | TIP5-1 | Probable aquaporin TIP5-1 | −2.48 | −2.82 | 8.26 | ||||
TRINITY_DN12736_c0_g1 | LLG2 | GPI-anchored protein LLG2 | −4.35 | −2.64 | |||||
TRINITY_DN165958_c0_g1 | GATL4 | Probable galacturonosyltransferase-like 4 | −4.18 | −4.06 | |||||
TRINITY_DN11246_c1_g1 | GNL2 | ARF guanine-nucleotide exchange factor GNL2 | −2.8 | −2.87 | |||||
TRINITY_DN63597_c0_g1 | MDIS2 | Protein MALE DISCOVERER 2 | −2.26 | 9.33 | |||||
TRINITY_DN9084_c0_g1 | SUC3 | Sucrose transport protein SUC3 | 11.54 | ||||||
TRINITY_DN18602_c0_g1 | SAUR62 | Auxin-responsive protein SAUR62 | 9.11 | ||||||
TRINITY_DN38341_c0_g1 | STP7 | Sugar transport protein 7 | 2.55 |
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Caperta, A.D.; Fernandes, I.; Conceição, S.I.R.; Marques, I.; Róis, A.S.; Paulo, O.S. Ovule Transcriptome Analysis Discloses Deregulation of Genes and Pathways in Sexual and Apomictic Limonium Species (Plumbaginaceae). Genes 2023, 14, 901. https://doi.org/10.3390/genes14040901
Caperta AD, Fernandes I, Conceição SIR, Marques I, Róis AS, Paulo OS. Ovule Transcriptome Analysis Discloses Deregulation of Genes and Pathways in Sexual and Apomictic Limonium Species (Plumbaginaceae). Genes. 2023; 14(4):901. https://doi.org/10.3390/genes14040901
Chicago/Turabian StyleCaperta, Ana D., Isabel Fernandes, Sofia I. R. Conceição, Isabel Marques, Ana S. Róis, and Octávio S. Paulo. 2023. "Ovule Transcriptome Analysis Discloses Deregulation of Genes and Pathways in Sexual and Apomictic Limonium Species (Plumbaginaceae)" Genes 14, no. 4: 901. https://doi.org/10.3390/genes14040901