Proteomic and Phosphoproteomic Analyses during Plant Regeneration Initiation in Cotton (Gossypium hirsutum L.)
Abstract
:1. Introduction
2. Results
2.1. The Positive Correlation between Changes in Proteins and Their Phosphorylation
2.2. Association Analysis of Differentially Accumulated Proteins (DAPs) and Correlated Differentially Regulated Phosphoproteins (DRPPs)
2.3. Dynamic Trajectory Analysis of Overlapping Proteins (DAPs-DRPPs) during Plant Regeneration Initiation
2.4. Enrichment Analysis of Proteins Susceptible to Regulation by Phosphorylation
3. Conclusions
4. Discussion
4.1. DAPs-DRPPs with Different Trajectory Patterns during Plant Regeneration Initiation
4.2. Proteins Susceptible to Regulation by Phosphorylation
4.3. Potential Critical DAPs-DRPPs in the Initiation of Plant Regeneration
5. Materials and Method
5.1. Association Analysis of the Proteome and Phosphoproteome
5.2. Analysis of DAPs and Correlated DRPPs (Differential Protein Statistics)
5.3. Hierarchical Clustering Analysis
5.4. Functional Enrichment Analysis
5.5. Enrichment-Based Clustering
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Guo, H.; Wang, J.; Huo, X.; Cui, X.; Zhang, L.; Qi, X.; Wu, X.; Liu, J.; Wang, A.; Liu, J.; et al. Proteomic and Phosphoproteomic Analyses during Plant Regeneration Initiation in Cotton (Gossypium hirsutum L.). Genes 2024, 15, 1079. https://doi.org/10.3390/genes15081079
Guo H, Wang J, Huo X, Cui X, Zhang L, Qi X, Wu X, Liu J, Wang A, Liu J, et al. Proteomic and Phosphoproteomic Analyses during Plant Regeneration Initiation in Cotton (Gossypium hirsutum L.). Genes. 2024; 15(8):1079. https://doi.org/10.3390/genes15081079
Chicago/Turabian StyleGuo, Haixia, Jin Wang, Xuehui Huo, Xiwang Cui, Li Zhang, Xiushan Qi, Xiaoying Wu, Junchen Liu, Aijuan Wang, Jialin Liu, and et al. 2024. "Proteomic and Phosphoproteomic Analyses during Plant Regeneration Initiation in Cotton (Gossypium hirsutum L.)" Genes 15, no. 8: 1079. https://doi.org/10.3390/genes15081079