The 3′-UTR Polymorphisms in the Thymidylate Synthase (TS) Gene Associated with the Risk of Ischemic Stroke and Silent Brain Infarction
Abstract
:1. Introduction
2. Materials and Methods
2.1. Ethics Approval
2.2. Study Population
2.3. Genotyping
2.4. Statistical Analyses
2.5. Cell Culture and Dual-Luciferase Activity Assay
3. Results
3.1. Population Characteristics
3.2. Association between TS Polymorphisms and Ischemic Stroke Prevalence
3.3. Gene-Environment Interaction Analyses and Haplotype Analysis
3.4. Difference of Plasma tHcy Level by Genotypes
3.5. Altered Gene Expression Level of TS According to TS 3′-UTR Polymorphisms
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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Characteristics | Controls (n = 409) | Stroke (n = 507) | P | LAD (n = 201) | P | SVD (n = 149) | P | CE (n = 54) | P | SBI (n = 383) | P |
---|---|---|---|---|---|---|---|---|---|---|---|
Male (n, %) | 173 (42.3) | 217 (42.8) | 0.952 | 83 (41.3) | 0.937 | 72 (48.3) | 0.441 | 22 (40.7) | 1.000 | 161 (42.0) | 0.795 |
Age (years, mean ± SD) | 62.77 ± 10.61 | 62.95 ± 10.93 | 0.806 | 64.04 ± 10.43 | 0.165 | 60.89 ± 10.87 | 0.097 | 65.78 ± 11.98 | 0.055 | 64.02 ± 10.67 | 0.828 |
HDL-C (mg/dL, mean ± SD) | 46.39 ± 13.75 | 44.50 ± 15.60 | 0.159 | 43.22 ± 13.15 | 0.025 | 44.50 ± 13.61 | 0.287 | 45.87 ± 13.75 | 0.810 | 45.22 ± 10.27 | 0.629 |
LDL-C (mg/dL, mean ± SD) | 118.34 ± 42.14 | 120.99 ± 33.50 | 0.409 | 126.09 ± 38.55 | 0.069 | 116.51 ± 29.15 | 0.788 | 114.79 ± 27.09 | 0.565 | 145.12 ± 34.99 | 0.229 |
Smoking (n, %) | 138 (33.7) | 191 (37.7) | 0.401 | 76 (37.8) | 0.502 | 58 (38.9) | 0.457 | 17 (31.5) | 0.885 | 55 (14.4) | <0.0001 |
Hypertension (n, %) | 167 (40.8) | 325 (64.1) | 0.0001 | 131 (65.2) | 0.002 | 91 (61.1) | 0.013 | 30 (55.6) | 0.250 | 183 (47.8) | 0.337 |
Diabetes mellitus (n, %) | 54 (13.2) | 140 (27.6) | <0.0001 | 56 (27.9) | 0.000 | 45 (30.2) | 0.000 | 10 (18.5) | 0.412 | 55 (14.4) | 0.838 |
Hyperlipidemia (n, %) | 93 (22.7) | 148 (29.2) | 0.094 | 65 (32.3) | 0.061 | 44 (29.5) | <0.0001 | 10 (18.5) | 0.731 | 94 (24.5) | 0.808 |
PLT (103 cell/μL, mean ± SD) | 242.30 ± 67.58 | 247.37 ± 87.51 | 0.340 | 256.56 ± 88.38 | 0.028 | 236.71 ± 63.26 | 0.553 | 244.93 ± 147.06 | 0.823 | 249.09 ± 71.40 | 0.525 |
PT (sec, mean ± SD) | 11.77 ± 0.80 | 11.78 ± 1.01 | 0.796 | 11.77 ± 0.76 | 0.979 | 11.64 ± 0.79 | 0.111 | 12.02 ± 1.02 | 0.041 | 12.06 ± 1.11 | <0.0001 |
aPTT (sec, mean ± SD) | 33.45 ± 18.57 | 30.50 ± 4.49 | 0.001 | 30.42 ± 4.70 | 0.025 | 30.85 ± 4.65 | 0.090 | 30.87 ± 4.25 | 0.320 | 32.17 ± 5.99 | 1.000 |
Fibrinogen (mg/dL, mean ± SD) | 398.39 ± 120.66 | 425.96 ± 130.43 | 0.024 | 433.11 ± 133.10 | 0.015 | 396.43 ± 111.67 | 0.945 | 450.82 ± 133.66 | 0.010 | 412.72 ± 115.29 | 0.843 |
Antithrombin (%, mean ± SD) | 94.49 ± 43.73 | 94.29 ± 17.25 | 0.936 | 95.42 ± 15.57 | 0.785 | 95.21 ± 19.77 | 0.321 | 87.25 ± 16.13 | 0.255 | 100.68 ± 12.34 | 0.442 |
BUN (mg/dL, mean ± SD) | 15.82 ± 5.01 | 15.99 ± 6.29 | 0.667 | 15.35 ± 4.88 | 0.268 | 15.11 ± 5.21 | 0.062 | 18.95 ± 10.97 | 0.000 | 16.22 ± 4.85 | 0.534 |
Urate (mg/dL, mean ± SD) | 4.65 ± 1.46 | 4.64 ± 1.51 | 0.908 | 4.60 ± 1.42 | 0.646 | 4.56 ± 1.32 | 0.632 | 4.62 ± 1.59 | 0.858 | 4.72 ± 1.75 | 0.810 |
tHcy (μmol/L, mean ± SD) | 10.06 ± 4.19 | 11.21 ± 6.69 | 0.003 | 11.12 ± 5.80 | 0.011 | 11.12 ± 6.04 | 0.144 | 10.05 ± 4.75 | 0.995 | 12.16 ± 7.71 | 0.001 |
Folate (ng/mL, mean ± SD) | 8.69 ± 6.26 | 6.91 ± 5.05 | <0.0001 | 6.53 ± 4.32 | <0.0001 | 7.10 ± 5.69 | <0.0001 | 7.65 ± 5.41 | 0.246 | 9.26 ± 7.03 | 0.268 |
Vit. B12 (pg/mL, mean ± SD) | 746.44 ± 667.38 | 750.07 ± 649.37 | 0.934 | 815.33 ± 910.03 | 0.293 | 658.09 ± 309.93 | 0.082 | 741.30 ± 289.12 | 0.956 | 704.61 ± 719.51 | 0.891 |
T. chol (mg/dL, mean ± SD) | 192.99 ± 37.56 | 190.84 ± 40.37 | 0.416 | 194.32 ± 45.59 | 0.704 | 189.18 ± 37.19 | 0.277 | 180.02 ± 34.96 | 0.017 | 238.76 ± 44.04 | <0.0001 |
Triglyceride (mg/dL, mean ± SD) | 146.73 ± 90.14 | 154.44 ± 114.39 | 0.272 | 152.35 ± 97.94 | 0.486 | 168.18 ± 124.29 | 0.049 | 135.91 ± 179.25 | 0.476 | 239.26 ± 173.87 | 0.064 |
Genotypes | Controls (n = 409) | Stroke (n = 507) | AOR (95% CI) * | P † | P ‡ | SBI (n = 383) | AOR (95% CI) * | P † | P ‡ |
---|---|---|---|---|---|---|---|---|---|
TS 1100 T>C | |||||||||
TT | 218 (53.3) | 215 (42.4) | 1.000 (reference) | 176 (45.9) | |||||
TC | 165 (40.3) | 235 (46.4) | 1.486 (1.115–1.980) | 0.007 | 0.011 | 173 (45.2) | 1.397 (0.961–2.031) | 0.080 | 0.120 |
CC | 26 (6.4) | 57 (11.2) | 2.151 (1.275–3.628) | 0.004 | 0.006 | 34 (8.9) | 1.740 (0.879–3.443) | 0.112 | 0.168 |
TT vs. TC+CC | 1.576 (1.197–2.074) | 0.001 | 0.002 | 1.443 (1.009–2.063) | 0.045 | 0.068 | |||
TT+TC vs. CC | 1.758 (1.064–2.905) | 0.028 | 0.042 | 1.489 (0.783–2.833) | 0.225 | 0.338 | |||
HWE P | 0.480 | 0.547 | 0.354 | ||||||
TS 1170 A>G | |||||||||
AA | 190 (46.5) | 320 (63.1) | 1.000 (reference) | 316 (82.5) | |||||
AG | 184 (45.0) | 170 (33.5) | 0.505 (0.377–0.676) | <0.0001 | 0.0003 | 61 (15.9) | 0.198 (0.127–0.309) | <0.0001 | 0.0003 |
GG | 35 (8.6) | 17 (3.4) | 0.284 (0.151–0.537) | <0.0001 | 0.0003 | 6 (1.6) | 0.070 (0.016–0.298) | 0.0002 | 0.0006 |
AA vs. AG+GG | 0.472 (0.357–0.626) | <0.0001 | 0.0003 | 0.179 (0.117–0.276) | <0.0001 | 0.0003 | |||
AA +AG vs. GG | 0.382 (0.206–0.710) | 0.002 | 0.006 | 0.121 (0.029–0.514) | 0.004 | 0.012 | |||
HWE P | 0.306 | 0.331 | 0.135 | ||||||
TS 1494 del>ins | |||||||||
0bp0bp | 197 (48.2) | 232 (45.8) | 1.000 (reference) | 184 (48.0) | |||||
0bp6bp | 180 (44.0) | 228 (45.0) | 1.127 (0.847–1.500) | 0.411 | 0.411 | 170 (44.4) | 1.121 (0.774–1.623) | 0.546 | 0.546 |
6bp6bp | 32 (7.8) | 47 (9.3) | 1.256 (0.754 2.091) | 0.381 | 0.381 | 29 (7.6) | 1.124 (0.570–2.217) | 0.736 | 0.736 |
0bp0bp vs. 0bp6bp+6bp6bp | 1.147 (0.872–1.509) | 0.326 | 0.326 | 1.122 (0.786–1.602) | 0.527 | 0.527 | |||
0bp0bp +0bp6bp vs. 6bp6bp | 1.302 (0.928–1.825) | 0.506 | 0.506 | 1.040 (0.543–1.994) | 0.905 | 0.905 | |||
HWE P | 0.300 | 0.398 | 0.228 |
Haplotypes | Controls (2n = 818) | Stroke (2n = 1014) | OR (95% CI) | P† | P‡ | SBI (2n = 766) | OR (95% CI) | P† | P‡ |
---|---|---|---|---|---|---|---|---|---|
TS 1100/1170/1494 | |||||||||
T-A-0bp | 320 (39.1) | 446 (44.0) | 1.000 (reference) | 379 (49.5) | 1.000 (reference) | ||||
T-A-6bp | 27 (3.4) | 15 (1.5) | 0.399 (0.209–0.762) | 0.006 | 0.010 | 101 (13.1) | 3.158 (2.014–4.954) | <0.0001 | 0.0001 |
T-G-0bp | 251 (30.7) | 204 (20.1) | 0.583 (0.461–0.737) | <0.0001 | 0.0003 | 45 (5.9) | 0.151 (0.107–0.215) | <0.0001 | 0.0001 |
T-G-6bp | 3 (0.3) | 0 (0.0) | 0.103 (0.005–1.994) | 0.074 | 0.093 | 0 (0.0) | 0.121 (0.006–2.346) | 0.097 | 0.097 |
C-A-0bp | 3 (0.4) | 42 (4.1) | 10.04 (3.085–32.70) | <0.0001 | 0.0003 | 96 (12.5) | 27.02 (8.478–86.10) | <0.0001 | 0.0001 |
C-A-6bp | 214 (26.2) | 307 (30.3) | 1.029 (0.821–1.290) | 0.818 | 0.818 | 118 (15.4) | 0.466 (0.356–0.610) | <0.0001 | 0.0001 |
TS 1100/1170 | |||||||||
T-A | 347 (42.4) | 461 (45.5) | 1.000 (reference) | 481 (62.8) | 1.000 (reference) | ||||
T-G | 254 (31.1) | 204 (20.1) | 0.605 (0.480–0.762) | <0.0001 | 0.0002 | 44 (5.8) | 0.125 (0.088–0.177) | <0.0001 | 0.0002 |
C-A | 217 (26.5) | 349 (34.4) | 1.211 (0.972–1.508) | 0.095 | 0.095 | 212 (27.7) | 0.705 (0.558–0.891) | 0.003 | 0.003 |
TS 1100/1494 | |||||||||
T-0bp | 571 (69.8) | 650 (64.1) | 1.000 (reference) | 424 (55.4) | 1.000 (reference) | ||||
T-6bp | 30 (3.7) | 15 (1.4) | 0.439 (0.234–0.825) | 0.010 | 0.015 | 101 (13.2) | 4.534 (2.959–6.946) | <0.0001 | 0.0002 |
C-0bp | 3 (0.4) | 42 (4.1) | 12.30 (3.791–39.90) | <0.0001 | 0.0003 | 114 (14.9) | 51.17 (16.15–162.2) | <0.0001 | 0.0002 |
C-6bp | 214 (26.2) | 307 (30.3) | 1.260 (1.024–1.551) | 0.031 | 0.031 | 127 (16.6) | 0.799 (0.621–1.029) | 0.082 | 0.082 |
TS 1170/1494 | |||||||||
A-0bp | 323 (39.5) | 488 (48.1) | 1.000 (reference) | 475 (62.0) | 1.000 (reference) | ||||
A-6p | 241 (29.4) | 322 (31.8) | 0.884 (0.711–1.100) | 0.289 | 0.289 | 218 (28.5) | 0.615 (0.488–0.775) | <0.0001 | 0.0002 |
G-0bp | 251 (30.7) | 204 (20.1) | 0.538 (0.427–0.679) | <0.0001 | 0.0002 | 63 (8.3) | 0.171 (0.125–0.233) | <0.0001 | 0.0002 |
SNP 1 | SNP 2 | Overall (n = 916) | Controls (n = 409) | Stroke patients (n = 507) | |||
---|---|---|---|---|---|---|---|
Mean ± SD (μmol/L) | CV (%) | Mean ± SD (μmol/L) | CV (%) | Mean ± SD (μmol/L) | CV (%) | ||
MTHFR 677C>T | |||||||
CC | - | 10.07 ± 6.45 | 64.1 | 9.23 ± 3.19 | 34.6 | 10.92 ± 8.50 | 77.8 |
CT | - | 9.95 ± 3.63 | 36.5 | 9.84 ± 3.51 | 35.7 | 10.03 ± 3.72 | 37.1 |
CC+CT | - | 9.99 ± 4.89 | 48.9 | 9.59 ± 3.39 | 35.3 | 10.35 ± 5.88 | 56.8 |
TT | - | 13.62 ± 7.73 | 56.8 | 12.53 ± 6.54 | 52.2 | 14.25 ± 8.31 | 58.3 |
P† | <0.001 | <0.001 | <0.001 | ||||
MTHFR 677C>T | TS 1100T>C | ||||||
CC+CT | TT | 9.84 ± 3.96 | 40.2 | 9.46 ± 3.34 | 35.3 | 10.24 ± 4.51 | 44.0 |
CC+CT | TC+CC | 10.13 ± 5.60 | 55.3 | 9.72 ± 3.45 | 35.5 | 10.42 ± 6.73 | 64.6 |
TT | TT | 12.85 ± 7.54 | 58.7 | 11.61 ± 5.44 | 46.9 | 13.85 ± 8.82 | 63.7 |
TT | TC+CC | 14.32 ± 7.87 | 55.0 | 13.83 ± 7.76 | 56.1 | 14.53 ± 7.97 | 54.9 |
P† | <0.001 | <0.001 | <0.001 | ||||
MTHFR 677C>T | TS 1170A>G | ||||||
CC+CT | AA | 9.98 ± 3.96 | 39.7 | 9.78 ± 3.67 | 37.5 | 10.10 ± 4.13 | 40.9 |
CC+CT | AG+GG | 10.01 ± 5.84 | 58.3 | 9.43 ± 3.14 | 33.3 | 10.77 ± 8.05 | 74.7 |
TT | AA | 13.92 ± 7.80 | 56.0 | 12.25 ± 6.59 | 53.8 | 14.68 ± 8.22 | 56.0 |
TT | AG+GG | 13.20 ± 7.67 | 58.1 | 12.80 ± 6.58 | 51.4 | 13.53 ± 8.50 | 62.8 |
P† | <0.001 | <0.001 | <0.001 | ||||
MTHFR 677C>T | TS 1494 ins/del | ||||||
CC+CT | 0bp0bp | 9.72 ± 3.44 | 35.4 | 9.37 ± 2.90 | 30.9 | 10.03 ± 3.83 | 38.2 |
CC+CT | 0bp6bp+6bp6bp | 10.23 ± 5.86 | 57.3 | 9.78 ± 3.76 | 38.4 | 10.61 ± 7.16 | 67.5 |
TT | 0bp0bp | 12.99 ± 7.80 | 60.0 | 11.57 ± 5.52 | 47.7 | 13.97 ± 8.97 | 64.2 |
TT | 0bp6bp+6bp6bp | 14.24±7.65 | 53.7 | 13.71±7.55 | 55.1 | 14.49±7.75 | 53.5 |
P† | <0.001 | <0.001 | <0.001 |
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Kim, J.O.; Park, H.S.; Ko, E.J.; Sung, J.H.; Kim, J.; Oh, S.H.; Kim, O.J.; Kim, N.K. The 3′-UTR Polymorphisms in the Thymidylate Synthase (TS) Gene Associated with the Risk of Ischemic Stroke and Silent Brain Infarction. J. Pers. Med. 2021, 11, 200. https://doi.org/10.3390/jpm11030200
Kim JO, Park HS, Ko EJ, Sung JH, Kim J, Oh SH, Kim OJ, Kim NK. The 3′-UTR Polymorphisms in the Thymidylate Synthase (TS) Gene Associated with the Risk of Ischemic Stroke and Silent Brain Infarction. Journal of Personalized Medicine. 2021; 11(3):200. https://doi.org/10.3390/jpm11030200
Chicago/Turabian StyleKim, Jung Oh, Han Sung Park, Eun Ju Ko, Jung Hoon Sung, Jinkwon Kim, Seung Hun Oh, Ok Joon Kim, and Nam Keun Kim. 2021. "The 3′-UTR Polymorphisms in the Thymidylate Synthase (TS) Gene Associated with the Risk of Ischemic Stroke and Silent Brain Infarction" Journal of Personalized Medicine 11, no. 3: 200. https://doi.org/10.3390/jpm11030200
APA StyleKim, J. O., Park, H. S., Ko, E. J., Sung, J. H., Kim, J., Oh, S. H., Kim, O. J., & Kim, N. K. (2021). The 3′-UTR Polymorphisms in the Thymidylate Synthase (TS) Gene Associated with the Risk of Ischemic Stroke and Silent Brain Infarction. Journal of Personalized Medicine, 11(3), 200. https://doi.org/10.3390/jpm11030200