Quantum dots (QDs) are semiconductor materials, with a size range between 1–10 nm, that exhibit unique size-dependent physical and chemical properties [
1], such as excellent photostability, a large Stokes shift related to their broad absorption spectrum, and a narrow and symmetric fluorescence emission peak [
2]. In fact, the ability to fine tune the QD emission wavelength over almost the entire visible spectrum make them ideal substitutes for conventional organic fluorophores [
3,
4]. They can be synthesized under different conditions to achieve a range of maximum emission fluorescence wavelengths, and this tunability, in simpler terms, allows for the creation of QDs with different fluorescent colors. The ability to tune these colors by manipulating the synthesis conditions is a significant advantage, as it allows for precise control over the color of the fluorescence, determined by the maximum emission fluorescence wavelength. Sensing performance and mechanism strongly depend on the careful selection of the emission wavelength [
5]. In biosensing applications, CdTe quantum dots have been employed for detecting a wide range of targets, including dopamine, propafenone, and urea, in diverse real samples such as biological fluids, human serum, and milk samples. Importantly, the sensing performance and mechanism of CdTe quantum dots depend heavily on the careful selection of their emission wavelength [
6]. Similarly, in chemosensing applications, QDs can be functionalized with a molecule that binds to a target chemical. The binding of the target chemical to the QD causes a change in the QD’s fluorescence [
7]. Due to these excellent optical properties, in recent decades, their use has grown in several areas, namely in medical imaging, biosensing [
8], and electronics (solar cells, transistors, LEDs) [
9]. Quantum dots are formed by a core, which can be coated with a shell, and they are generally made of elements from groups IIB-VIB, IIIB-VB, and IVB-VIB of the periodic table [
10]. The inorganic core is fundamental for the optical properties of the nanocrystals, and the shell, composed of the capping agents, is important to stabilize the core and enhance the quantum yield. The core size of QDs is smaller than the Bohr radius of the constituent materials, leading to the occurrence of the quantum confinement effect. Due to this effect, it is possible to modulate the fluorescence emission, depending directly on the particle size, as well as the composition of the QDs, both core and capping. The lower the diameter of the QD, the greater the value energy of its band gap and, therefore, the shorter the emission wavelength of fluorescence [
11,
12]. The capping agent, commonly called the stabilizing agent, also increases the stability and the solubility of QDs and allows for control of the size distribution of the nanocrystals and their morphology. In addition, these capping agents avoid the agglomeration of quantum dots during and after their synthesis [
13]. Capping agents with thiol functional groups, such as thioglycolic acid (TGA), are widely used in the aqueous synthesis of quantum dots and can markedly increase the intensity of their fluorescence emission due to the formation of a covalent bond between sulfur (the donor atom) and incompletely coordinated Cd
2+ ions on the surface of the QDs [
14]. Cadmium telluride (CdTe) QDs are the most commonly used due to their small size and ease of acquisition from several direct aqueous synthesis approaches [
15]. These nanocrystals can be prepared through different methods, namely top-down and bottom-up approaches. Nowadays, there is a concern about finding greener chemical schemes to synthesize them [
16]. The microwave dielectric heating method has begun to be frequently used as an alternative to typical hydrothermal approaches, such as, for example, synthesis in a three-neck round-bottom glass flask with conventional heating [
17]. This method is less time-consuming, and it allows a better size control and increases the synthesis product yield [
18]. The production of CdTe QDs coated by thiol capping agents was described in the literature, namely mercaptosuccinic acid [
19] or mercaptoundecanoic acid [
20], and produced by different hydrothermal approaches, such as the work reported by He et al. [
21]. Nevertheless, reports about nanomaterials’ synthesis through microwave dielectric heating have also been published, like the TGA-capped CdTe QDs produced by Ding et al. [
22] under a nitrogen atmosphere, where the authors studied the influence of parameters like temperature, reaction time, and chemical ratios. The obtained quantum dots were spherical with a size range between 3 and 5 nm. More reports about the optimization of the CdTe QDs synthesis can be found in the literature, where the influence of several parameters is studied. However, there is a lack of simple open-air procedures and size control, and an absence of λ
max control, which makes the scaling-up procedure difficult and makes them uninteresting to biomedical applications, namely in biosensing and/or bioimaging, in which the size and the fluorescence color are essential characteristics. The usage of experimental design and multivariate analysis allows the study of different parameters at the same time, reducing the costs associated with the synthesis procedures, and also the study of different interactions between the same parameters, which is not possible through univariate analysis. Also, experimental design gives us a predictive mathematical model to determine certain experimental conditions in order to produce a specific quantum dot. Therefore, in this study, a simple and straightforward method to synthesize CdTe QDs capped with TGA was used, in open-air conditions, under microwave irradiation. Based on our understanding, there is no existing literature that focuses on the creation of a mathematical model for the precise control of the maximum emission fluorescence wavelength of TGA-capped CdTe quantum dots when synthesized by microwave radiation. The use of microwave radiation, as an alternative to the conventional hydrothermal synthetic procedures, can be a valuable non-classical energy source since it allows homogeneous heating of the solution in a shorter time. The synthesis optimization was conducted by design of experiments and multivariate analysis, and four distinct factors, namely time, temperature, tellurium/cadmium ratio (Te:Cd), and TGA/cadmium ratio (TGA:Cd), were studied with the aim of evaluating their influence on QDs synthesis and how they affect the fluorescence maximum emission wavelength (λ
max). The developed approach allowed the production of TGA-capped CdTe QDs with different fluorescence wavelengths and colors, from green to dark red, corresponding to different sizes (~2–5 nm). A mathematical model was adjusted to the obtained results, which enabled us to predict the maximum emission fluorescence wavelength of as-synthesized TGA-capped CdTe quantum dots, considering specific synthesis parameters. This mathematical model was then utilized to determine the necessary synthesis conditions to produce QDs with predetermined maximum emission fluorescence wavelengths. Subsequently, we performed a comprehensive validation by synthesizing QDs aimed at achieving predetermined wavelengths. The long-term stability of the as-synthesized QDs was evaluated to assure their usage weeks after synthesis in diverse applications.