Next Article in Journal
Thermal Decomposition of Compounds Derived from 2H-Dihydropyran: A Computational Study
Previous Article in Journal
Preparation of Hierarchical Porous ZIF-67 and Its Application in Zinc Battery Separator
 
 
Font Type:
Arial Georgia Verdana
Font Size:
Aa Aa Aa
Line Spacing:
Column Width:
Background:
Article

Coordination Modes of Ortho-Substituted Benzoates Towards Divalent Copper Centres in the Presence of Diimines

by
Ioannis Loukas
,
Eirini Frantzana
,
Antonios Hatzidimitriou
*,
Demetrios Tzimopoulos
and
Pericles Akrivos
Laboratory of Inorganic Chemistry, Department of Chemistry, Aristotle University of Thessaloniki, P.O. Box 135, GR-54124 Thessaloniki, Greece
*
Author to whom correspondence should be addressed.
Chemistry 2024, 6(6), 1374-1384; https://doi.org/10.3390/chemistry6060081
Submission received: 8 October 2024 / Revised: 26 October 2024 / Accepted: 29 October 2024 / Published: 4 November 2024
(This article belongs to the Section Inorganic and Solid State Chemistry)

Abstract

:
The coordination modes of several ortho-substituted benzoates towards the copper(II) centre are investigated. The coordination environment of the metal ion includes nitrogen atoms from 2,2′-bipyridine (bipy) or 1,10-phenanthroline (phen) and occasionally oxygen atoms from coordinated water, ethanol molecules, or nitrate ions. The compounds are investigated by a variety of spectroscopic methods and by single-crystal X-ray diffraction. Although the reaction scheme involved equimolar amounts of the reactants, cationic dinuclear compounds with a metal/benzoate/diimine ratio of 2:3:2 have been realized, cationic in nature regardless of the counter anion used. Furthermore, the carboxylate moieties display a range of twisting relative to the orientation of the benzene ring to which they are attached.

Graphical Abstract

1. Introduction

The divalent state of copper is probably the most studied among metal ions, owing to its energetic stability and structural versatility. The ion possesses a single lone electron in its valence d orbital set and is probably the most reactive Lewis acid, easily forming coordination compounds even with relatively weak Lewis bases. In the case of ligands that possess more than one lone pair of electrons available for coordination, either on the same or on different atoms, a wide variety of local coordination environments may be realized and overall structures of enhanced complexity may result, extending to 3D frameworks [1,2].
The electron distribution within such structures gives rise to either localized or dispersed electron populations, leading in turn to either unique or tunable electric, magnetic, and optical properties. Such properties have made copper compounds suitable candidates for practically every application related to modern life requirements, including catalysts for a wide variety of organic reactions [3], biomimicking processes [4,5], power sources in solid propellants [6], and ferromagnetic [7,8] or antiferromagnetic materials [9]. The availability of lone pairs on both oxygen atoms in a carboxylate ion provides the background for the adoption of several coordination modes of the COO moiety to metal centres, among which the bridging of neighbouring metal ions is not uncommon [10,11]. Dimer and oligomer formation prevails in such compounds and occasionally there exist short metal–metal interactions, while solvent molecules appear to participate in the coordination sphere of the metal ions [11]. The reaction medium, the ligand substituents, and the nature of the counterions are crucial factors in determining the overall structure of metal benzoates [12,13,14,15].
In the present study, o-Br and o-I benzoic acids were used, and their coordination towards Cu(II) was investigated in the presence of bipyridine and phenanthroline. The corresponding benzoates are symbolized as o-Y, where Y is the substituent at the ortho-position of the benzoic acid ring. The compounds synthesized could be grouped in accordance with the metal/acid/diimine ratio as neutral (1:2:1) and cationic (1:1:2 or 1:1:1), the latter being candidates for the formation of dimmers or oligomers. In the process, some of the compounds were crystallographically characterized as [Cu2(o-Br)3(bipy)2] . NO3 . 0.5(MeOH) . 0.5(H2O), 1, [Cu2(o-I)3(bipy)2] . NO3 . 0.5(MeOH) . H2O, 2 and [Cu2(o-I)3(phen)2] . ClO4 . 0.75(MeOH) . 0.75(H2O), 3.

2. Experimental Section

2.1. Materials and Measurements

The copper salts, the benzoic acids, and the diimines were of the best quality available. No precaution was taken to completely dry the solvents used. FT ATR spectra of the compounds were recorded on a Thermo Scientific™ Nicolet™ iS20 FTIR spectrometer (Thermo Fisher Scientific, Waltham, MA, USA). A Jasco V-750 UV-Vis spectrometer (Jasco, Tokyo, Japan) was used for recording the electronic excitation spectra; 0.1 mM solutions were used and placed in 1 cm quartz cuvettes. Electrical conductivity measurements were carried out in 1 mM solutions of dichloromethane and methanol on a WTW conductometer with a type C cell and platinum electrodes.

2.2. X-Ray Crystallographic Details

Single-crystals of complexes 13 suitable for crystal structure analysis were obtained by slow evaporation of their mother liquids at RT. They were mounted at room temperature on a Bruker Kappa APEX2 diffractometer (Bruker, Billerica, MA, USA) equipped with a Triumph monochromator using Mo Kα (λ = 0.71073 Å, source operating at 50 kV and 30 mA) radiation. Unit cell dimensions were determined and refined by using the angular settings of at least 166 high-intensity reflections (>10σ(I)) in the range 11 < 2θ < 36°. Intensity data were recorded using φ and ω scans. All crystals presented no decay during data collection. The frames collected for each crystal were integrated with the Bruker SAINT Software package v 1.1 [16] using a narrow-frame algorithm. Data were corrected for absorption using the numerical method (SADABS) based on crystal dimensions [17]. The structure was solved using the SUPERFLIP package [18] incorporated in Crystals. Data refinement (full-matrix least-squares methods on F2) and all subsequent calculations were carried out using the Crystals version 14.61 build 7809 or 6236 program package [19]. All non-hydrogen non-disordered atoms were refined anisotropically. For the disordered atoms, their occupation factors under fixed isotropic thermal parameters were detected first. Afterwards, they were all refined with fixed occupation factors, isotropically in the case of compounds 1 and 3 (solvent molecules and counter ions or oxygen atoms of the counter ions) and anisotropically in the case of compound 2 (nitrate anions and solvent molecules).
Hydrogen atoms riding on non-disordered parent atoms were located from different Fourier maps and refined at idealized positions riding on the parent atoms with isotropic displacement parameters Uiso(H) = 1.2Ueq(C) or 1.5Ueq (methyl and -OH hydrogens) and at distances of 0.95 Å for C-H and 0.82 Å for O-H. Hydrogen atoms riding on disordered oxygen atoms of water and methanol solvent molecules were positioned geometrically to fulfil hydrogen bonding demands. Illustrations with 50% ellipsoids probability were drawn by CAMERON [20]. Crystallographic data for complexes 13 are presented in Table 1.

2.3. Synthesis of the Complexes

In a typical synthesis reaction, 1 mmol of the acid was dissolved in 10 mL of methanol and to the solution, 1.2 mL of 1 M NaOH in methanol was added. The solution was stirred at room temperature for 30 min. In a separate beaker, 1 mmol of a Cu2+ salt and 1 mmol of the appropriate diimine were added to 10 mL of methanol and the mixture was stirred at room temperature for 30 min. Following, the deprotonated acid solution was streamed into the metal–diimine solution and 20 mL of dichloromethane was added to facilitate precipitation of the inorganic salt produced. After stirring for 30 min at room temperature, the mixture was filtered and left to evaporate at room temperature, providing a microcrystalline or crystalline solid. The product yield of all reactions varied from 71 to 75% and was referred to as the metal ion.

3. Results and Discussion

The reaction between Cu(II) salts and carboxylates in the presence of diimines should not be considered a simple and straightforward interaction since the high Lewis acidity of the metal ion, the formation of chelate rings, and the generally shallow potential energy surfaces of the resulting compounds may give rise to a wide variety of local and overall structures.

3.1. Structure Elucidation

In the nitrate compounds there appear certain features indicating the presence of non-coordinating nitrate ions [21]. The couple of strong sharp bands at 728 and 770 cm−1 and the very strong one at 1305 cm−1 may be assigned to the infrared active vibrations of the ion possessing a relatively high symmetry, while the absence of a significant band above 1600 cm−1 supports the non-coordinating nature of the ion since in this region there is expected to appear the N=O bond vibration. For the perchlorate compounds, the characteristic intense band attributed to non-coordinated perchlorate anion at 1080 cm−1 was observed in every case.
The region where the carbonyl stretches are expected appears complicated as there is no strong band but rather a multiplet of medium strength bands ranging from 1580 to 1540 cm−1. This is an indication of the presence of distinctively different carboxylate groups, something that may occur in dinuclear or oligonuclear complexes. Similar to the above are the findings in the infrared spectra of the perchlorate compounds with the distinct feature that the presence of the intense non-coordinating perchlorate band at around 1080 cm−1 is present in all of them. Representative spectra are given in the Supplementary Material.
The spectra recorded present the typical intense band in the region below 300 nm that is dominated by intense and narrow π-π* bands accompanied by less intense and broader n-π* bands and charge transfer bands as evinced by analysis of the spectra line into Gaussian-type components (Figure 1). An analogous analysis was carried out on some of the low energy bands in the region above 650 nm. For the recording of these bands, 1.0 mM solutions were prepared and the analysis revealed at least four components. Due to the low symmetry of the chromophores, in “octahedral” complexes there is no expectation of realization of the Jahn–Teller split of the d-d transition but rather the presence of several closely lying bands. The same is true in the case of the “square pyramidal” compounds [22].
Due to the availability of the 1.0 mM solutions of the compounds, electric conductivity measurements were carried out on the grounds of available literature data for the characterization of compounds in various solvents at this concentration level [23]. The compounds revealed 1:1 electrolyte behaviour, with conductivity values lying closely but slightly outside the lower limit reported in the literature for dichloromethane and methanol solutions. This is an indication that the expected formula of [Cu(benzoate)(diamine)] cation is not the one present but instead either an equilibrium between the separate ingredients of the cation and a complex coordinated only with the anion or an association to form dimers or oligomer complexes is present.

3.2. X-Ray-Structures

In general, all three complexes 1, 2, and 3 are monocationic binuclear and contain two Cu(II) metal ions, two bipy ligands, and three o-substituted deprotonated carboxylic acids. One of the carboxylate ligands is coordinated as a bidentate μ1,3–bridge between the copper atoms. The rest two are monodentately coordinated through one of the carboxylic oxygens bridging the Cu(II) cations. Each one of the bipy ligands is coordinated to one Cu(II) cation in a typical bidentate chelate fashion. In all benzoates, the carboxylate group is not parallel to the phenyl ring forming angles between 45° and 85°.
Compound 1 crystallizes in the triclinic Pī space group with Z = 4. The unit cell contains two pairs of symmetrically equivalent monocationic binuclear Cu(II) complexes formulated as [C41H28Br3Cu2N4O6]+ or better [Cu2(o-Br)3(bipy)2]+, four nitrate counter anions, two methanol, and two water solvate molecules, all the latest placed on general positions filling the lattice voids. The nitrate anions, solvate methanol, and water molecules were all found disordered over two positions with equal occupation factors of 0.5. One of the total six bromine atoms was also found disordered with occupation factors of 0.8 and 0.2. Figure 2 presents the structures of complex 1a, (a), and 1b, (b) (both present in the asymmetric unit) of complex 1. Table 2 contains the interatomic distances and bond angles for complexes 1a and 1b. The two complexes in the asymmetric unit are generally similar but not identical. The distances between the copper ions in the binuclear complexes vary from 3.1989 (8) to 3.2376(8) Å. If Cu-O distances longer than 2.72 Å will be considered as non-bonding, then each Cu(II) cation is five coordinated with a CuO3N2 chromophore. The nitrogen-coordinated atoms come from the chelate bidentate bipy ligands with nearly equal bond distances for 1a and slightly different in 1b. Two of the oxygen atoms belong to the monodentate bridging deprotonated (o-Br) carboxylate ligands with bridging distances considerably different (ca Cu2—O3 1.953(3) and Cu1—O3 2.294(3) Å. The third oxygen comes from the μ1,3 bridging bidentate (o-Br) carboxylate with oxygen atoms at nearly equal distances to the metal ions. Both copper cations in both 1a and 1b complexes adopt a tetragonal pyramidal coordination symmetry according to trigonality index τ5 values (τ5 = (φ1 − φ2)/60°, where φ1 and φ2 are the largest angles in the coordination sphere. The value τ5= 0 denotes a perfect square pyramid while the value τ5 = 1 denotes a perfect trigonal bipyramid) [24]. The values of τ5 are 0.08 for Cu1 and 0.04 for Cu2 in complex 1a, while τ5 = 0.15 for Cu3 and τ5 = 0.03 for Cu4 in complex 1b. In all cases, the longer distanced O atom (O3 from Cu1 and O5 from Cu2 for 1a and O11 from Cu3 and O9 from Cu4 for 1b) lies on the apical position and the rest are closer to Cu(II); two oxygen and two nitrogen atoms form the basal plane.
The phenyl rings of the singly coordinated bridging benzoates lie almost parallel to the rings of the bipy ligands, giving rise to π-π interactions between them and adding rigidity to the whole structure. An extended hydrogen bonding net between the solvate methanol hydroxide groups and the water hydrogen atoms with the nitrate oxygen and the bromine atoms is also formed, giving stability to the crystal lattice.
Compound 2 crystallizes in the triclinic Pī space group with Z = 4. The unit cell is similar to that of complex 1 and again contains two pairs of equivalent monocationic binuclear complexes. The carboxylate anion used in this case was the (o-I). In complex 2, only one of the two solvate water molecules present per cell was disordered. This water molecule, as well as the solvate methanol molecule, were both disordered over two positions with equal occupation factors. Two of the nitrate anions were found disordered over two positions with equal occupation factors. The third nitrate anion had the nitrogen atom fully occupied and all three oxygen atoms equally disordered over two positions each. One of the six iodine atoms was also disordered over two positions with occupation factors of 0.8 and 0.2. The description of the structure is similar to that of complex 1. The structure of complex 2a (one of the two complexes present in the asymmetric unit) is presented in Figure 3a, while the second complex 2b is presented in Figure 3b. Interatomic distances and bond angles for complexes 2a and 2b are presented in Table 3.
The values of τ5 were calculated as follows: for Cu1, τ5 = 0.06; for Cu2, τ5 = 0.08; for Cu3, τ5 = 0.03; and for Cu4, τ5 = 0.15. As all values are very close to zero. A square pyramidal geometry can be proposed for all four Cu(II) cations included in the two monocationic complexes in the asymmetric unit of complex 2. The four square pyramids formed have O5 and O3 oxygen atoms on the apical positions of complex 2a, and O9 and O11 on the apical positions of complex 2b. In both complexes, π-π interactions from the phenyl rings of the singly coordinated carboxylates to one of the pyridine rings of bipy arise, giving stability to the structure formed. Centroid-to-centroid distances were measured to expand by between 3.66 and 3.86 Å.
The formed crystal lattice gains extra stability from the hydrogen bonding net extended from all water and methanol hydroxide groups to the nitrate oxygen and the halogen atoms.
Compound 3 crystallizes in the triclinic Pī space group with Z = 2. In the asymmetric unit of 3, one monocationic Cu(II) complex, one disordered perchlorate counter anion, one and a half disordered solvate methanols, and one and a half disordered solvate water molecules are present. For the perchlorate anion, three oxygen atoms were found disordered over two positions with equal occupation factors. The chlorine atom and one of the oxygen atoms were fully occupied. The methanol and water solvate molecules were found disordered over two positions, each with occupation factors of 0.5 and 0.25. The main monocationic binuclear complex unit with the general formula [Cu2(o-I)3(bipy)2]+ is similar to those previously described. Both Cu(II) cations are again five coordinated with square pyramidal geometry and a CuO3N2 chromophore. Figure 4 presents the structure of complex 3, and selected geometric parameters are presented in Table 4.
The τ5 values calculated for the Cu1 and Cu2 coordination environment were 0.17 and 0.03, respectively, giving evidence to the geometry already mentioned. The basal plane of the pyramid around Cu1 is formed from O1, O3, N1, and N2 and on the apical position lies the longer-distanced O5. Respectively, O5, O2, N3, and N4 form the basal plane of the square pyramid around Cu2, and O3 lies in the apical position.
The disordered solvate methanol and water molecules form a hydrogen bonding net interacting with each other and with the oxygen atoms of the disordered perchlorate anion, giving stability to the lattice formed.
All distances and bite angles in all complexes were found to be similar to those found in analogous complexes already published [25].

3.3. Computational Verification

In view of the unique coordination behaviour of the carboxylate ions observed by crystallography, we carried out a series of simple semi-empirical quantum chemical calculations by means of the MOPAC2016 program [26], utilizing the PM7 Hamiltonian implemented within it [27]. At first, the benzoic acid was considered and its ground state structure was optimized. The backbone of the molecule was used to represent a monodentate carboxylate, with the acidic H atom acting as the coordinated metal. Applying the rigid rotor approach, the twisting angle of the carboxylate group relative to the benzene ring varied at 15 degrees intervals and at each point, calculation of the Hessian matrix was performed. The obtained difference is the two carboxylate-centred vibrations revealed a maximum deviation of 13 cm−1 relative to the value of the perfectly planar orientation. The benzoate anion was also optimized and its structure was used to account for the symmetrically chelating carboxylate. Following a series of single-point computations as above, a variation of the Δν between the two carboxylate-centred vibrations of 19 cm−1 was obtained. Following the crystallographic investigation, three single-point calculations were carried out on the configurations observed in compound 2. In every case, the fragment was assigned a charge of −1 and the Hessian matrix calculation was carried out. The calculated asymmetric stretch revealed a spread of 70 cm−1 between the three units while for the symmetric one, a spread of 15 cm−1 was calculated.
Although qualitative, the above results are in accordance with the observed features of the infrared spectra of the compounds, namely the appearance of more than one medium-intensity band in the region where the characteristic intense vibration of the carboxylic group is expected. This is an indication of the presence of more than one carboxylic moiety within the formula and a distinctively different environment for each of them, which is crystallographically identified as a variation in the twisting of the carboxylate group relative to the benzene ring of the acids.

4. Conclusions

The coordination of ortho-benzoates towards Cu(II) centres is as facile as expected due to the high Lewis acidity of the metal ion and the presence of α-diimines gives rise to the formation of dinuclear ionic compounds. Apart from the expected stoichiometries, complexes with a Cu2(diimine)2(benzoate)3 cation and non-coordinating nitrate or perchlorate anion have been realised. The resulting non-rigidity of the overall structures is evident from the slight but distinct peculiarities in the spectra line shapes both in the infrared spectra recorded in the solid state and visible spectra recorded in the solution. In the infrared spectra, a splitting and dispersion of the characteristic carboxylate bands is evident along with a diminishing in their intensity, while in the low energy visible region, the presence of several d-d bands is revealed by spectra deconvolution, indicating the presence of non-identical local metal environments.

Supplementary Materials

The following supporting information can be downloaded at: https://www.mdpi.com/article/10.3390/chemistry6060081/s1, CCDC 2387609-2387611 deposition numbers contain the supplementary crystallographic data for the complexes. These data can be obtained free of charge via www.ccdc.cam.ac.uk/conts/retrieving.html (accessed on 28 October 2024) (or from the Cambridge Crystallographic Data Centre, 12 Union Road, Cambridge CB21EZ, UK; fax: (+44) 1223-336-033; or [email protected]).

Author Contributions

Conceptualization, D.T. and P.A.; Methodology, D.T. and A.H.; Software, E.F. and A.H.; Validation, A.H., D.T. and P.A.; Formal Analysis, E.F. and I.L.; Investigation, E.F. and I.L.; Resources, E.F., I.L. and D.T.; Data Curation, A.H.; Writing—Original Draft Preparation, P.A.; Writing—Review & Editing,; Visualization, A.H.; Supervision, A.H. and D.T. All authors have read and agreed to the published version of the manuscript.

Funding

This research received no external funding.

Data Availability Statement

Conflicts of Interest

Authors declare no conflict of interest.

References

  1. Shi, K.; Mathivathanan, L.; Herchel, R.; Boudalis, A.K.; Raptis, R.G. Supramolecular Assemblies of Trinuclear Copper(II)-Pyrazolato Units: A Structural, Magnetic and EPR Study. Chemistry 2020, 2, 626–644. [Google Scholar] [CrossRef]
  2. Rocco, D.; Novak, S.; Prescimone, A.; Constable, E.C.; Housecroft, C.E. Manipulating the Conformation of 3,2′:6′,3″-Terpyridine in [Cu2(μ-OAc)4(3,2′:6′,3″-tpy)]n 1D-Polymers. Chemistry 2021, 3, 182–198. [Google Scholar] [CrossRef]
  3. Antenucci, A.; Dughera, S. C-N, C-O and C-S Ullmann-Type Coupling Reactions of Arenediazoniumo-Benzenedisulfonimides. Reactions 2022, 3, 300–311. [Google Scholar] [CrossRef]
  4. Shaban, S.Y.; Ramadan, A.E.M.A.; Ibrahim, M.M.; Elshami, F.I.; Eldik, R. Square planar versus square pyramidal copper(II) complexes containing N3O moiety: Synthesis, structural characterization, kinetic and catalytic mimicking activity. Inorg. Chim. Acta 2019, 486, 608–616. [Google Scholar] [CrossRef]
  5. Andrejević, T.P.; Aleksic, I.; Počkaj, M.; Kljun, J.; Milivojevic, D.; Stevanović, N.L.; Nikodinovic-Runic, J.; Turel, I.; Djuran, M.I.; Glišić, B.D. Tailoring copper(ii) complexes with pyridine-4,5-dicarboxylate esters for anti-Candida activity. J. Chem. Soc. Dalton Trans. 2021, 50, 2627–2638. [Google Scholar] [CrossRef]
  6. Wang, C.; Tang, R.; Wan, C.; Qin, Z.; Chen, S.; Xu, K. Two novel metal complexes based on 2,2′-bipyridine and 2,4-dihydroxybenzoic acid: Synthesis, crystal structure and catalytic performance. J. Mol. Struct. 2023, 1291, 136066. [Google Scholar] [CrossRef]
  7. Massoud, S.S.; Louka, F.R.; Dial, M.T.; Salem, N.N.M.H.; Fischer, R.C.; Torvisco, A.; Mautner, F.A.; Nakashima, K.; Handa, M.; Mikuriya, M. Magnetostructural Properties of Some Doubly-Bridged PhenoxidoCopper(II) Complexes. Molecules 2023, 28, 2648. [Google Scholar] [CrossRef]
  8. Veber, S.L.; Tumanov, S.V.; Fokin, S.V.; Tolstikov, S.E.; Sobenina, L.N.; Romanenko, G.V.; Bogomyakov, A.S.; Morozov, V.A.; Trofimov, B.A.; Ovcharenko, V.I.; et al. Five-Spin Copper(II) Nitroxide Complex with Apparently Compressed Octahedral Geometry: Design, Synthesis, and Magnetostructural Studies. Cryst. Growth Des. 2023, 23, 1057–1065. [Google Scholar] [CrossRef]
  9. Maldonado, N.; Perles, J.; Martínez, J.I.; Gómez-García, C.J.; Marcos, M.L.; Amo-Ochoa, P. Experimental and Theoretical Study of Dynamic Structural Transformations between Sensing Copper(II)-Uracil Antiferromagnetic and Metamagnetic Coordination Compounds. Cryst. Growth Des. 2020, 20, 5097–5107. [Google Scholar] [CrossRef]
  10. Rigamonti, L.; Carlino, S.; Halibi, Y.; Demartin, F.; Castellano, C.; Ponti, A.; Pievo, R.; Pasini, A. Copper 1D coordination polymers and dimers: Role of the carboxylate and the ammonium cation, crystal structures and magnetic studies. Polyhedron 2013, 53, 157–165. [Google Scholar] [CrossRef]
  11. Sk, S.; Biswas, S.; Dutt, N.; Das, A.; Suryadevara, N.; Vijaykumar, G.; Bhunia, P.; Ruben, M.; Mandal, S.; Bera, M. Structures and Properties of a Series of High-Spin [CoII2] Complexes Supported by Ancillary Benzoate, Ortho-Hydroxybenzoate, and Para-Hydroxybenzoate Ligands. Cryst. Growth Des. 2023, 23, 5925–5940. [Google Scholar] [CrossRef]
  12. Sánchez-Férez, F.; Pou, R.; Bayés-García, L.; Font-Bardia, M.; Pons, J.; Ayllón, J.A. Benzoate substituents effects on the structure of Zn(II) complexes and 1D 4,4′-bipyridine derived coordination polymers. Inorg. Chim. Acta 2020, 500, 119218. [Google Scholar] [CrossRef]
  13. Ayllón, J.A.; Vallcorba, O.; Domingo, C. Solvent Influence in the Synthesis of Lead(II) Complexes Containing Benzoate Derivatives. Inorganics 2024, 12, 24. [Google Scholar] [CrossRef]
  14. Eom, G.H.; Park, H.M.; Hyun, M.Y.; Jang, S.P.; Kim, C.; Lee, J.H.; Lee, S.J.; Kim, S.J.; Kim, Y. Anion effects on the crystal structures of ZnII complexes containing 2,2′-bipyridine: Their photoluminescence and catalytic activities. Polyhedron 2011, 30, 1555–1564. [Google Scholar] [CrossRef]
  15. Katzsch, F.; Münch, A.S.; Mertens, F.O.R.L.; Weber, E. Copper(II) benzoate dimers coordinated by different linear alcohols—A systematic study of crystal structures. J. Mol. Struct. 2014, 1064, 122–129. [Google Scholar] [CrossRef]
  16. Bruker Analytical X-ray Systems, Inc. Apex2, Version 2 User Manual, M86-E01078; Bruker Analytical X-ray Systems, Inc.: Madison, WI, USA, 2006. [Google Scholar]
  17. Siemens Industrial Automation, Inc. SADABS: Area–Detector Absorption Correction; Siemens Industrial Automation, Inc.: Plano, TX, USA, 1996. [Google Scholar]
  18. Palatinus, L.; Chapuis, G. SUPERFLIP—A Computer Program for the Solution of Crystal Structures by Charge Flipping in Arbitrary Dimensions. J. Appl. Cryst. 2007, 40, 786–790. [Google Scholar] [CrossRef]
  19. Betteridge, P.W.; Carruthers, J.R.; Cooper, R.I.; Prout, K.; Watkin, D.J. CRYSTALS version 12: Software for guided crystal structure analysis. J. Appl. Cryst. 2003, 36, 1487. [Google Scholar] [CrossRef]
  20. Watkin, D.J.; Prout, C.K.; Pearce, L.J. X-Ray, CAMERON, Chemical Crystallography Laboratory; Oxford University: Oxford, UK, 1996. [Google Scholar]
  21. Mihaylov, M.Y.; Zdravkova, V.R.; Ivanova, E.Z.; Aleksandrov, H.A.; Petkov, P.S.; Vayssilov, G.N.; Hadjiivanov, K.I. Infrared spectra of surface nitrates: Revision of the current opinions based on the case study of ceria. J. Catal. 2021, 394, 245–258. [Google Scholar] [CrossRef]
  22. Jorgensen, C.K. Studies of Absorption Spectra. III. Absorption Bands as Gaussian Error Curves. Acta Chem. Scand. 1954, 8, 1495–1501. [Google Scholar] [CrossRef]
  23. Geary, W.J. The use of conductivity measurements in organic solvents for the characterisation of coordination compounds. Coord. Chem. Rev. 1971, 7, 81–122. [Google Scholar] [CrossRef]
  24. Addison, A.W.; Rao, T.N.; Reedijk, J.; van Rijn, J.; Verschoor, G.C. Synthesis, structure, and spectroscopic properties of copper(II) compounds containing nitrogen–sulphur donor ligands; the crystal and molecular structure of aqua[1,7-bis(N-methylbenzimidazol-2′-yl)-2,6-dithiaheptane]copper(II) perchlorate. J. Chem. Soc. Dalton Trans. 1984, 7, 1349–1356. [Google Scholar] [CrossRef]
  25. Psomas, G. Copper(II) and zinc(II) coordination compounds of non-steroidal anti-inflammatory drugs: Structural features and antioxidant activity. Coord. Chem.Rev. 2020, 412, 213259. [Google Scholar] [CrossRef]
  26. Stewart, J.J.P. Optimization of parameters for semiempirical methods VI: More modifications to the NDDO approximations and re-optimization of parameters. J. Mol. Model. 2013, 19, 1–32. [Google Scholar] [CrossRef]
  27. Stewart, J.J.P. Computational Chemistry, Colorado Springs, CO, USA. Available online: http://OpenMOPAC.net (accessed on 10 October 2019).
Figure 1. Analysis of the spectra curve (solid line) in the visible high energy region for compound 2 into gaussian components (dashed lines). Spectrum recorded in 0.1 mM methanolic solution. The vertical axis presents the optical density and the horizontal the wavelength λ (nm).
Figure 1. Analysis of the spectra curve (solid line) in the visible high energy region for compound 2 into gaussian components (dashed lines). Spectrum recorded in 0.1 mM methanolic solution. The vertical axis presents the optical density and the horizontal the wavelength λ (nm).
Chemistry 06 00081 g001
Figure 2. (a). The crystal structure of complex 1a. Nitrate counter anion, solvate methanol, and water molecules as well as the aromatic hydrogen atoms have been omitted for clarity. (b). The crystal structure of complex 1b. Nitrate counter ion, solvate methanol, and water molecules as well as the aromatic hydrogen atoms have been omitted for clarity. Only the higher occupied disordered Br6 atom is shown.
Figure 2. (a). The crystal structure of complex 1a. Nitrate counter anion, solvate methanol, and water molecules as well as the aromatic hydrogen atoms have been omitted for clarity. (b). The crystal structure of complex 1b. Nitrate counter ion, solvate methanol, and water molecules as well as the aromatic hydrogen atoms have been omitted for clarity. Only the higher occupied disordered Br6 atom is shown.
Chemistry 06 00081 g002
Figure 3. (a). The crystal structure of complex 2a. Nitrate counter ion, solvate methanol, and water molecules as well as the aromatic hydrogen atoms have been omitted for clarity. (b). The crystal structure of complex 2b. Nitrate counter ion, solvate methanol, and water molecules as well as the aromatic hydrogen atoms have been omitted for clarity. Only the higher occupied disordered I6 atom is shown.
Figure 3. (a). The crystal structure of complex 2a. Nitrate counter ion, solvate methanol, and water molecules as well as the aromatic hydrogen atoms have been omitted for clarity. (b). The crystal structure of complex 2b. Nitrate counter ion, solvate methanol, and water molecules as well as the aromatic hydrogen atoms have been omitted for clarity. Only the higher occupied disordered I6 atom is shown.
Chemistry 06 00081 g003
Figure 4. The crystal structure of complex 3. Perchlorate counter ion, solvate methanol, and water molecules as well as the aromatic hydrogen atoms have been omitted for clarity.
Figure 4. The crystal structure of complex 3. Perchlorate counter ion, solvate methanol, and water molecules as well as the aromatic hydrogen atoms have been omitted for clarity.
Chemistry 06 00081 g004
Table 1. Crystal data and experimental details.
Table 1. Crystal data and experimental details.
Chemical formula sumC41.50H31Br3Cu2N5O10C41.50H32Cu2I3N5O10.50C45.75H32.50ClCu2I3N4O11.50
Chemical formula moietyCu2(C7H3O2Br)3(C10H8N2)2 . NO3 . 0.5(CH3OH). 0.5(H2O) Cu2(C7H3O2I)3(C10H8N2)2 . NO3 . 0.5(CH3OH) . H2O[Cu2(C7H3O2I)3(C10H8N2)2] . ClO4 . 0.75(CH3OH) . 0.75(H2O)
Mr1126.541276.551365.54
Crystal system
Space group
Triclinic
Pī
Triclinic
Pī
Triclinic
Pī
Temperature (K)295295295
a (Å)
b (Å)
c (Å)
14.933 (2)
16.939 (3)
19.285 (3)
14.911 (2)
17.044 (2)
19.322 (3)
10.7073 (6)
13.0072 (8)
18.2613 (10)
α (°)
β (°)
γ (°)
80.552 (4)
83.179 (5)
71.468 (4)
81.219 (4)
84.200 (4)
72.181 (4)
79.937 (2)
74.2319 (19)
75.857 (2)
V3)4551.0 (12)4612.5 (11)2357.3 (2)
Z442
Radiation typeMoKαMoKαMoKα
µ (mm−1)3.632.992.99
Crystal size (mm)0.27 × 0.26 × 0.180.26 × 0.15 × 0.140.17 × 0.16 × 0.12
Data collection
DiffractometerBruker Kappa Apex2
Tmin, Tmax0.39, 0.520.64, 0.660.62, 0.70
No. of reflections
measured
independent
observed [I > 2.0σ(I)]

63,702
15,751
11,081

71,115
18,100
12,696

34,902
9026
7074
Rint0.0330.0300.031
(sinθ/λ)max−1)0.5950.6190.616
Refinement
R[F2 > 2σ(F2)]
wR(F2)
S
0.049
0.067
1.00
0.048
0.090
1.00
0.051
0.093
1.00
No. of reflections11,08112,6967074
No. of parameters11061216607
No. of restraints244022
H-atom treatmentH-atom parameters constrained
Δρmax, Δρmin (e Å−3)0.82, −0.611.70, −1.191.30, −1.32
Table 2. Selected interatomic distances (Å) and bond angles (o).
Table 2. Selected interatomic distances (Å) and bond angles (o).
Complex 1a Complex 1b
Cu1—Cu23.2376 (8)Cu3—Cu43.1989 (8)
Cu1—O11.957 (3)Cu3—O71.947 (3)
Cu1—O32.294 (3)Cu3—O91.956 (3)
Cu1—O51.952 (3)Cu3—O112.308 (3)
Cu1—N12.001 (4)Cu3—N51.965 (3)
Cu1—N22.006 (3)Cu3—N61.963 (3)
Cu2—O21.967 (3)Cu4—O81.945 (3)
Cu2—O31.953 (3)Cu4—O92.330 (3)
Cu2—O52.303 (3)Cu4—O111.968 (3)
Cu2—N31.988 (4)Cu4—N71.971 (3)
Cu2—N41.986 (3)Cu4—N81.990 (3)
O1—Cu1—O387.34 (11)O7—Cu3—O993.48 (11)
O1—Cu1—O593.44 (12)O7—Cu3—O1190.83 (11)
O3—Cu1—O576.11 (10)O9—Cu3—O1178.61 (11)
O1—Cu1—N1171.85 (13)O7—Cu3—N591.21 (13)
O3—Cu1—N194.88 (12)O9—Cu3—N5175.15 (13)
O5—Cu1—N194.70 (13)O11—Cu3—N5102.56 (13)
O1—Cu1—N291.15 (14)O7—Cu3—N6166.19 (13)
O3—Cu1—N2116.50 (12)O9—Cu3—N694.49 (13)
O5—Cu1—N2166.80 (13)O11—Cu3—N6101.79 (12)
N1—Cu1—N280.84 (15)N5—Cu3—N680.67 (15)
O2—Cu2—O391.37 (12)O8—Cu4—O987.10 (11)
O2—Cu2—O590.27 (11)O8—Cu4—O1194.25 (11)
O3—Cu2—O575.88 (10)O9—Cu4—O1177.84 (11)
O2—Cu2—N3172.71 (13)O8—Cu4—N7170.10 (13)
O3—Cu2—N395.85 (13)O9—Cu4—N794.14 (12)
O5—Cu2—N390.54 (12)O11—Cu4—N795.62 (13)
O2—Cu2—N491.47 (13)O8—Cu4—N889.83 (13)
O3—Cu2—N4170.31 (13)O9—Cu4—N8109.52 (12)
O5—Cu2—N4113.37 (12)O11—Cu4—N8171.79 (12)
N3—Cu2—N481.56 (14)N7—Cu4—N880.49 (14)
Table 3. Selected interatomic distances (Å) and bond angles (º).
Table 3. Selected interatomic distances (Å) and bond angles (º).
Complex 2a Complex 2b
Cu1—Cu23.2327 (11)Cu3—Cu43.2183 (11)
Cu1—O12.011 (4)Cu3—O71.960 (4)
Cu1—O32.315 (4)Cu3—O92.350 (4)
Cu1—O51.964 (4)Cu3—O112.112 (5)
Cu1—N11.954 (5)Cu3—N51.992 (5)
Cu1—N21.954 (5)Cu3—N61.985 (5)
Cu2—O21.947 (4)Cu4—O81.953 (4)
Cu2—O31.966 (4)Cu4—O91.975 (4)
Cu2—O52.327 (4)Cu4—O112.294 (5)
Cu2—N31.989 (5)Cu4—N71.996 (5)
Cu2—N41.992 (5)Cu4—N81.958 (6)
O1—Cu1—O390.39 (16)O7—Cu3—O986.52 (17)
O1—Cu1—O590.92 (18)O7—Cu3—O1195.73 (17)
O3—Cu1—O577.48 (16)O9—Cu3—O1176.54 (16)
O1—Cu1—N1172.4 (2)O7—Cu3—N5170.5 (2)
O3—Cu1—N190.12 (19)O9—Cu3—N594.02 (19)
O5—Cu1—N196.6 (2)O11—Cu3—N593.6 (2)
O1—Cu1—N291.9 (2)O7—Cu3—N689.68 (19)
O3—Cu1—N2113.04 (19)O9—Cu3—N6109.45 (18)
O5—Cu1—N2169.1 (2)O11—Cu3—N6172.22 (19)
N1—Cu1—N280.9 (2)N5—Cu3—N681.2 (2)
O2—Cu2—O392.52 (18)O8—Cu4—O993.85 (18)
O2—Cu2—O586.65 (17)O8—Cu4—O1193.09 (18)
O3—Cu2—O577.15 (16)O9—Cu4—O1180.54 (17)
O2—Cu2—N3172.5 (2)O8—Cu4—N7165.7 (2)
O3—Cu2—N395.0 (2)O9—Cu4—N793.6 (2)
O5—Cu2—N395.72 (19)O11—Cu4—N7100.2 (2)
O2—Cu2—N492.2 (2)O8—Cu4—N891.3 (2)
O3—Cu2—N4167.6 (2)O9—Cu4—N8174.8 (2)
O5—Cu2—N4114.61 (19)O11—Cu4—N8100.09 (19)
N3—Cu2—N480.3 (2)N7—Cu4—N881.2 (2)
Table 4. Selected interatomic distances (Å) and bond angles (o) in complex 3.
Table 4. Selected interatomic distances (Å) and bond angles (o) in complex 3.
Cu1—Cu23.1884 (9)N1—Cu1—O598.13 (17)
Cu1—N12.003 (5)N2—Cu1—O5104.07 (16)
Cu1—N22.009 (5)O1—Cu1—O594.79 (16)
Cu1—O11.955 (4)O3—Cu1—O577.96 (16)
Cu1—O31.939 (4)N3—Cu2—N482.4 (2)
Cu1—O52.267 (4)N3—Cu2—O288.74 (19)
Cu2—N32.000 (5)N4—Cu2—O2171.06 (19)
Cu2—N41.993 (5)N3—Cu2—O3110.85 (16)
Cu2—O21.950 (4)N4—Cu2—O392.82 (18)
Cu2—O32.354 (4)O2—Cu2—O389.36 (16)
Cu2—O51.950 (4)N3—Cu2—O5173.09 (18)
N1—Cu1—N282.3 (2)N4—Cu2—O595.08 (18)
N1—Cu1—O1166.32 (18)O2—Cu2—O593.86 (17)
N2—Cu1—O190.20 (18)O3—Cu2—O575.62 (15)
N1—Cu1—O394.72 (19)N1—Cu1—O598.13 (17)
N2—Cu1—O3176.61 (18)N2—Cu1—O5104.07 (16)
O1—Cu1—O392.33 (17)O1—Cu1—O594.79 (16)
O3—Cu1—O577.96 (16)
Disclaimer/Publisher’s Note: The statements, opinions and data contained in all publications are solely those of the individual author(s) and contributor(s) and not of MDPI and/or the editor(s). MDPI and/or the editor(s) disclaim responsibility for any injury to people or property resulting from any ideas, methods, instructions or products referred to in the content.

Share and Cite

MDPI and ACS Style

Loukas, I.; Frantzana, E.; Hatzidimitriou, A.; Tzimopoulos, D.; Akrivos, P. Coordination Modes of Ortho-Substituted Benzoates Towards Divalent Copper Centres in the Presence of Diimines. Chemistry 2024, 6, 1374-1384. https://doi.org/10.3390/chemistry6060081

AMA Style

Loukas I, Frantzana E, Hatzidimitriou A, Tzimopoulos D, Akrivos P. Coordination Modes of Ortho-Substituted Benzoates Towards Divalent Copper Centres in the Presence of Diimines. Chemistry. 2024; 6(6):1374-1384. https://doi.org/10.3390/chemistry6060081

Chicago/Turabian Style

Loukas, Ioannis, Eirini Frantzana, Antonios Hatzidimitriou, Demetrios Tzimopoulos, and Pericles Akrivos. 2024. "Coordination Modes of Ortho-Substituted Benzoates Towards Divalent Copper Centres in the Presence of Diimines" Chemistry 6, no. 6: 1374-1384. https://doi.org/10.3390/chemistry6060081

APA Style

Loukas, I., Frantzana, E., Hatzidimitriou, A., Tzimopoulos, D., & Akrivos, P. (2024). Coordination Modes of Ortho-Substituted Benzoates Towards Divalent Copper Centres in the Presence of Diimines. Chemistry, 6(6), 1374-1384. https://doi.org/10.3390/chemistry6060081

Article Metrics

Back to TopTop