*3.7. Alignment and Phylogenetic Analysis*

Sets of individual genes were aligned using MUSCLE [55] (version 3.8.31) with default parameters. For the analysis of the combined dataset, alignments of individual genes were concatenated using custom script. Phylogenetic analysis was performed using RaXML software (version 8.2.4) with parameters "-m GTRCAT -× 123, 456 -N 100 -p 098765".
