*3.5. Different DEGs between Two Cultivars*

To examine the different DEGs between the two cultivars, comparisons were made between the DEGs of 750-1 and ZCFB (Figure 6A,B). The absolute values of log2 foldchanges were set as equal to or greater than five. Furthermore, the DEGs involved in N metabolism, which were analyzed previously, were excluded from these analyses. The results indicated that 110 unique DEGs from 750-1 could be detected in leaves, and most were down-regulated (Figure 6A), while 142 unique DEGs from ZCFB were detected in roots, and most were up-regulated (Figure 6B). Most of the unique DEGs are described in the following section (Figure 7A–J).

**Figure 7.** Classification of unique DEGs. (**A**): Protein metabolism. (**B**): Carbon metabolism. (**C**): Lipid metabolism. (**D**): Secondary metabolism. (**E**): Cell wall synthesis and structure. (**F**): Transport. (**G**): Signal transduction. (**H**): Transcription factor. (**I**): Stress response. (**J**): Disease resistance. L1, TCL1 vs. TTL3; R2, TCR2 vs. TTR4; L3, SCL5 vs. SCL7; R4, SCR6 vs. STR8.
