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Search Results (1,119)

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22 pages, 17577 KB  
Article
Valorization of Grape Seed By-Products by Lactiplantibacillus plantarum FBL002 Fermentation: Multi-Omics Insights into β-Glucosidase-Mediated Polyphenol Biotransformation and Antioxidant Enhancement
by Yuan Shi, Jianhua Cheng, Litao Hu, Jialiang Lin, Yan Wang, Hao Huang, Zihao Yu, Chunlu He, Wenjie Xu, Wuxia Chen, Yichen Fan, Weikang Cui, Yuan Ban, Shaonian Chang, Haiyang Ye and Haifeng Huang
Fermentation 2026, 12(5), 246; https://doi.org/10.3390/fermentation12050246 - 19 May 2026
Abstract
Grape seeds are a major by-product of grape processing and a rich source of polyphenolic compounds, yet their value remains underutilized. In this study, 12 lactic acid bacteria (LAB) strains were evaluated in a grape seed-based fermentation system to compare their tolerance, metabolic [...] Read more.
Grape seeds are a major by-product of grape processing and a rich source of polyphenolic compounds, yet their value remains underutilized. In this study, 12 lactic acid bacteria (LAB) strains were evaluated in a grape seed-based fermentation system to compare their tolerance, metabolic performance, and ability to promote polyphenol release. Among them, Lactiplantibacillus plantarum FBL002 showed the best overall performance. The strain maintained strong viability and metabolic activity at 5% grape seed concentration and released polyphenols more effectively than the other tested strains. The resulting fermentation broth also showed pronounced intracellular antioxidant activity. To clarify the basis of this phenotype, we further combined metabolomic, genomic, and transcriptomic analyses. Fermentation caused substantial shifts in phenolic metabolites, characterized by a decrease in glycosylated forms and an increase in more bioactive aglycones. Genome annotation revealed an enrichment of β-glucosidase-related genes in FBL002, and transcriptomic analysis showed that these genes were markedly upregulated during fermentation. This pattern was closely associated with the enhanced release of polyphenols. Together, these findings identify β-glucosidase as a key driver of grape seed polyphenol biotransformation by FBL002 and support the sustainable, high-value use of grape seeds in functional foods and cosmetic applications. Full article
(This article belongs to the Section Microbial Metabolism, Physiology & Genetics)
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29 pages, 3281 KB  
Review
Ganoderma lucidum as a Functional Bioactive Candidate for Glycemic Regulation: Mechanisms, Preclinical Evidence, and Clinical Translation
by Bogdan Florea, Doru Morar, Corina Marina Kracunovic, Simina Velescu, Vlad Iorgoni, Paula Nistor, Janos Degi, Ionica Iancu, Maria-Larisa Ardelean (Rusu), Romeo Teodor Cristina, Alexandra Pocinoc and Eugenia Dumitrescu
Metabolites 2026, 16(5), 334; https://doi.org/10.3390/metabo16050334 - 15 May 2026
Viewed by 173
Abstract
Type 2 diabetes mellitus (T2DM) is a major global health challenge that has intensified interest in multi-target nutraceuticals with potential adjunctive benefits. Ganoderma lucidum (Lingzhi/Reishi) is a medicinal mushroom traditionally used in East Asia and is increasingly investigated for its role in glycemic [...] Read more.
Type 2 diabetes mellitus (T2DM) is a major global health challenge that has intensified interest in multi-target nutraceuticals with potential adjunctive benefits. Ganoderma lucidum (Lingzhi/Reishi) is a medicinal mushroom traditionally used in East Asia and is increasingly investigated for its role in glycemic regulation and metabolic disturbances. This review critically synthesizes current evidence on its hypoglycemic effects, focusing on bioactive compounds, molecular mechanisms, and translational limitations. Unlike broader reviews on Ganoderma bioactivity and health-related benefits, this review specifically evaluates the alignment between taxonomic authentication, chemical standardization, preclinical mechanisms, and human clinical evidence in the context of glycemic regulation. This narrative review was based on a targeted literature search conducted in PubMed/MEDLINE, Web of Science, and Scopus for studies published up to October 2025, supplemented by Google Scholar. The included studies comprised in vitro experiments, in vivo animal models, and human clinical trials evaluating glycemic and metabolic outcomes of Ganoderma preparations. In vitro and animal studies indicate that polysaccharides, including β-(1→3)/(1→6)-glucans and proteoglycans such as FYGL, may improve insulin sensitivity via AMPK (AMP-activated protein kinase) and PI3K/Akt pathways, promote GLUT4 (glucose transporter type 4) translocation, suppress hepatic gluconeogenesis, protect pancreatic β-cells, and modulate gut microbiota. In enzyme assays and preclinical models, lanostane-type triterpenoids act primarily by inhibiting α-glucosidase and α-amylase, thereby potentially reducing postprandial glucose excursions. Despite consistent preclinical evidence, clinical findings remain heterogeneous, with the largest randomized controlled trial reporting no significant glycemic benefit. Overall, Ganoderma lucidum shows strong mechanistic plausibility but insufficient clinical evidence for antidiabetic efficacy. Future research should prioritize species authentication, chemical standardization, and adequately powered clinical trials. Full article
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27 pages, 2295 KB  
Article
Phytochemical Analysis, GC-MS Chemical Profiling, and In Vitro Antidiabetic Evaluation of South African Momordica balsamina Linn Leaf Extracts and Its Effects on Oxidative Stress Modulation
by Buang Matseke, Daniel Tswaledi and Kokoette Bassey
Curr. Issues Mol. Biol. 2026, 48(5), 503; https://doi.org/10.3390/cimb48050503 - 13 May 2026
Viewed by 96
Abstract
Background: Momordica balsamina L. is widely used in traditional medicine for the management of diabetes in South Africa and globally. This study evaluated the in vitro antidiabetic and cytotoxic effects of M. balsamina leaf extracts and identified bioactive compounds potentially responsible for its [...] Read more.
Background: Momordica balsamina L. is widely used in traditional medicine for the management of diabetes in South Africa and globally. This study evaluated the in vitro antidiabetic and cytotoxic effects of M. balsamina leaf extracts and identified bioactive compounds potentially responsible for its activity. Methods: Leaves were sequentially extracted using solvents of increasing polarity. Phytochemical composition was determined using standard colorimetric assays, while gas chromatography–mass spectrometry (GC–MS) was employed for compound identification. Antioxidant activity was evaluated using dot blot, DPPH radical scavenging, hydrogen peroxide scavenging, and ferric reducing power assays. Antidiabetic potential was assessed using α-amylase, α-glucosidase, and β-glucosidase inhibitory assays, with acarbose as the reference drug. Cytotoxicity was determined by using the MTT assay on Vero and HEK-293 cell lines. Results: Phytochemical screening revealed alkaloids, flavonoids, terpenoids, saponins, glycosides, and steroids. GC–MS analysis identified compounds associated with antidiabetic activity, including vanillin, 2,4-di-tert-butylphenol, oleic acid, phytol, and hexadecenoic acid. All extracts exhibited antioxidant activity, with the ethyl acetate extract showing the strongest effect. Enzyme inhibition was concentration dependent. The dichloromethane and ethyl acetate extracts showed stronger α-amylase inhibition (IC50 = 0.149 and 0.146 mg/mL) than acarbose (0.209 mg/mL). For α-glucosidase, acarbose showed the highest activity, while extracts displayed moderate inhibition. In β-glucosidase assays, both extracts were more active than acarbose. Both extracts were non-cytotoxic up to 500 µg/mL. Conclusions: These findings support the traditional use of M. balsamina and highlight its potential as a safe source of antidiabetic agents, warranting further investigation. Full article
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16 pages, 1652 KB  
Article
Bioprospecting Fungi in Mediterranean Fermentations: Functional Insights and Antibacterial Potential
by David Willian Bertan, Eliana Setsuko Kamimura and Célia Quintas
Fermentation 2026, 12(5), 237; https://doi.org/10.3390/fermentation12050237 - 13 May 2026
Viewed by 190
Abstract
Table olives, particularly traditionally fermented cracked-style green olives, rely on natural microbial activity without chemical debittering, with fungi playing key roles; in contrast, arbutus berry fermentation remains less characterized in terms of microbial functionality. This study investigated the enzymatic and antibacterial potential of [...] Read more.
Table olives, particularly traditionally fermented cracked-style green olives, rely on natural microbial activity without chemical debittering, with fungi playing key roles; in contrast, arbutus berry fermentation remains less characterized in terms of microbial functionality. This study investigated the enzymatic and antibacterial potential of fungal isolates from both systems. A total of 84 isolates belonging to Aureobasidium, Candida, Cryptococcus, Saccharomyces, Pichia, Issatchenkia, Torulaspora, and Sporobolomyces were screened for hydrolytic enzymes (pectinases, amylases, cellulases, xylanases, lipases, proteases, tannases, and β-glucosidases) using selective media, and for antibacterial activity against major foodborne pathogens. Isolates from arbutus fermentation showed no relevant enzymatic or antibacterial ability. In contrast, several isolates from olive fermentation exhibited significant functional traits. Aureobasidium pullulans demonstrated broad enzymatic capacity, producing amylases, esterases, and tannases, along with lipid hydrolysis, but also expressed cellulase, pectinase, and protease abilities. Cryptococcus spp. displayed interesting profiles, with low cellulolytic and pectinolytic capacity and higher phenolase, esterase, and lipase capacities. Antibacterial activity was observed exclusively against Gram-positive bacteria, particularly Staphylococcus aureus and Listeria monocytogenes, mainly among Candida membranifaciens, Cryptococcus spp., and A. pullulans. Overall, table olive fermentation isolates showed promising biotechnological potential for food preservation and quality enhancement, whereas arbutus isolates appeared to have limited functional relevance. Full article
(This article belongs to the Special Issue New Research on Fungal Secondary Metabolites, 3rd Edition)
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14 pages, 1285 KB  
Article
Impacts of Alpine Grassland Degradation on Soil Aggregate Distribution and Stability in the Qinghai Lake Basin, Qinghai–Tibetan Plateau
by Jie Ma, Wei Wang, Yuan Han, Guoqing Niu, Xiaolong Li, Yuanjie Hu, Ping Zhang, Jifu Zhang and Xiang Liu
Land 2026, 15(5), 826; https://doi.org/10.3390/land15050826 (registering DOI) - 12 May 2026
Viewed by 241
Abstract
Under the influence of climate change and human activities, alpine grasslands in the Qinghai Lake basin have undergone a degradation trend over recent decades. In this context, investigating the distribution and stability of soil aggregates across varying degradation degrees of alpine grasslands, along [...] Read more.
Under the influence of climate change and human activities, alpine grasslands in the Qinghai Lake basin have undergone a degradation trend over recent decades. In this context, investigating the distribution and stability of soil aggregates across varying degradation degrees of alpine grasslands, along with their driving factors, is critical for formulating sustainable management strategies to maintain grassland health and soil structural resilience in this ecologically sensitive region. In this study, plant and soil samples (0–20 cm) were collected at nine sites in the Qinghai Lake basin, each encompassing a non-degraded (ND), a lightly degraded (LD), and a heavily degraded (HD) grassland plot. The distribution and stability of mechanically stable aggregates and water-stable aggregates were evaluated using the dry-sieving and wet-sieving methods, respectively. The results showed that grassland degradation led to declines in plant above-ground and below-ground biomass, soil carbon, nitrogen, phosphorus, and microbial biomass carbon contents, and β-1,4-nacetylglucosaminidase activity, alongside an increase in soil pH. However, soil β-1,4-glucosidase and alkaline phosphatase activities exhibited no significant changes. The 2–0.25 mm fraction is the primary component of mechanically stable aggregates in alpine grasslands across three degradation levels. After degradation, neither the distribution nor the stability of mechanically stable aggregates exhibited significant changes. In terms of water-stable aggregates, the 2–0.25 mm fraction constituted the primary component in ND and LD, whereas the <0.053 mm fraction predominated in HD. Additionally, the mass proportions of the >2 mm and 2–0.25 mm size fractions were significantly lower in HD compared to ND, while the mass fraction of the <0.053 mm fraction was notably higher. The altered distribution of water-stable aggregates resulted in a significant decrease in mean weight diameter and a notable increase in the percentage of aggregate destruction, suggesting a reduced resistance of the soil to water erosion. Plant below-ground biomass, soil total organic carbon, and total nitrogen were identified as crucial factors modulating the dynamics of aggregate stability during grassland degradation. The findings of this study suggest that alpine grassland degradation in the Qinghai Lake basin reduces the water stability rather than the mechanical stability of soil aggregates. Full article
(This article belongs to the Section Land Use, Impact Assessment and Sustainability)
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19 pages, 6042 KB  
Article
Temperature-Dependent Conformational Dynamics of Substrate Entrance Loops in β-Glucosidase: Insights from Molecular Dynamics Simulations
by Ki Hyun Nam
Int. J. Mol. Sci. 2026, 27(10), 4279; https://doi.org/10.3390/ijms27104279 - 11 May 2026
Viewed by 165
Abstract
β-Glucosidase (BGL) is widely used in biofuel production, industrial value-added chemicals, and food industry applications. The substrate entrance loops of BGL play a role in substrate specificity and accessibility. To better understand the substrate entrance loops of BGL, a high-resolution crystal structure of [...] Read more.
β-Glucosidase (BGL) is widely used in biofuel production, industrial value-added chemicals, and food industry applications. The substrate entrance loops of BGL play a role in substrate specificity and accessibility. To better understand the substrate entrance loops of BGL, a high-resolution crystal structure of BGL from Thermoanaerobacterium saccharolyticum (TsaBGL) was determined at 1.65 Å, and all-atom molecular dynamics (MD) simulations were performed. The crystal structure of TsaBGL exhibited both folded and straight conformations of the flexible L3 loop, along with rigid conformations of L1, L2, and L4 loops. MD simulations revealed that the folded L3 loop transitioned to a straight conformation, indicating the preference for the straight conformation. At the optimal temperature for enzyme activity, the flexibility of the L3 loop of TsaBGL decreased, whereas that of the L1 loop increased. Moreover, the positions of L1 and L2 loops shifted in a direction opposite to the substrate entrance, resulting in an expanded substrate-binding entrance and increased substrate accessibility to the active site. MD simulations of three homologous BGLs showed that, despite sequence variability, a conserved dynamic trend exists in which the L1 loop exhibits higher flexibility, whereas the L3–L4 loops maintain structural rigidity under optimal conditions. These results provide both an understanding of the loop dynamics involved in substrate accessibility in BGLs and insights into enzyme engineering to improve catalytic performance. Full article
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15 pages, 2676 KB  
Article
Taxon-Specific Physiological and Rhizosphere Responses of Deciduous Ornamental Shrubs to Humic- and Fulvic Acid-Based Biostimulant Treatment
by Dezső Kovács, Katalin Horotán, László Orlóci, Katalin Juhos, István Dániel Mosonyi, Zsanett Istvánfi, Magdolna Sütöri-Diószegi and Szilvia Kisvarga
Plants 2026, 15(10), 1455; https://doi.org/10.3390/plants15101455 - 10 May 2026
Viewed by 194
Abstract
In containerized finished plant production, the effects of biostimulants in nursery practice are often judged primarily on the basis of visual condition, while a more precise interpretation of treatment response requires leaf-level physiological and rhizosphere-level indicators. The aim of our study was to [...] Read more.
In containerized finished plant production, the effects of biostimulants in nursery practice are often judged primarily on the basis of visual condition, while a more precise interpretation of treatment response requires leaf-level physiological and rhizosphere-level indicators. The aim of our study was to determine how the humic- and fulvic acid-based BiStep biostimulant influences the physiological functioning and, in part, the rhizosphere enzyme activity of three deciduous ornamental shrub taxa widely used both in nursery finished plant production and in urban green space plantings, namely, Forsythia × intermedia ‘Beatrix Farrand’, Weigela florida ‘Eva Rathke’, and Viburnum opulus ‘Roseum’, under commercial container conditions. In the experiment, control and biostimulant treatments were compared. Treatment effects were evaluated on the basis of net photosynthesis (Pn); transpiration (E); chlorophyll content; stomatal density; stomatal length; and acid phosphatase (ACP), alkaline phosphatase (ALP), and β-glucosidase (GLUC) activities. For Pn, a significant taxon × treatment interaction was observed (p = 0.002). Pn showed taxon-dependent numerical changes under BiStep: values were 22.212 µmol CO2 m−2 s−1 in F. intermedia, 4.182 µmol CO2 m−2 s−1 in W. florida, and 3.370 µmol CO2 m−2 s−1 in V. opulus, but pairwise differences from the control were not statistically significant. Transpiration also showed a significant taxon × treatment interaction (p < 0.001), although BiStep–control differences were not significant within taxa. Stomatal density increased significantly in F. intermedia and W. florida, while the BiStep–control difference was not significant in V. opulus. Chlorophyll content increased only in W. florida (from 699.6 to 924.4 µg g−1 fresh weight), but this change was not statistically significant. ACP activity showed significant treatment and interaction effects (p = 0.0107; p = 0.00546), whereas ALP and GLUC did not show a consistent treatment response. Based on the results, the effect of BiStep was clearly taxon-dependent and functionally selective. Therefore, in nursery finished plant production and subsequent urban plant use, it should not be considered a universally effective input, but rather a biostimulant whose relevance depends on the specific physiological and rhizosphere-level response of the taxon. Full article
(This article belongs to the Section Horticultural Science and Ornamental Plants)
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14 pages, 393 KB  
Article
Food Biotechnology Potential of Grape-Derived Aureobasidium pullulans: Characterization and Screening for Enzyme Production Capacity
by Vesna Milanović, Ana Boban, Federica Cardinali, Andrea Osimani, Lucia Aquilanti, Cristiana Garofalo, Giorgia Rampanti and Irena Budić-Leto
Foods 2026, 15(9), 1573; https://doi.org/10.3390/foods15091573 - 3 May 2026
Viewed by 297
Abstract
Aureobasidium pullulans is a polyextremotolerant yeast-like fungus increasingly recognized for its role in food ecosystems and its emerging potential in flavour development and nutrient modulation. However, systematic evaluations of autochthonous grape-associated populations integrating technological performance and safety-related traits remain limited. This study provides [...] Read more.
Aureobasidium pullulans is a polyextremotolerant yeast-like fungus increasingly recognized for its role in food ecosystems and its emerging potential in flavour development and nutrient modulation. However, systematic evaluations of autochthonous grape-associated populations integrating technological performance and safety-related traits remain limited. This study provides a broad phenotypic screening of 70 isolates from Maraština grapes (Dalmatia, Croatia), applying an integrated functional screening approach to link enzymatic potential, environmental resilience, and food safety. Most isolates displayed multiple hydrolytic enzymes, with widespread cellulase, pectinase, xylanase, esterase, and protease activities. Several isolates showed very high enzymatic indices, supporting their potential for plant-derived substrate transformation, aroma release, and food processing applications. β-glucosidase and urease activities were common, while amylase was limited. Ecological screening confirmed robust adaptability to salinity, osmotic stress, and wide pH ranges. Notably, 31% of isolates demonstrated phosphate solubilization capacity, indicating a possible contribution to mineral bioavailability and nutritional enhancement. Safety screening revealed decarboxylation of selected amino acids, while two isolates lacked detectable activity, highlighting them as candidates for further safety evaluation. Overall, this work establishes a framework for selecting A. pullulans isolates for next-generation, flavour-oriented and nutritionally enhanced food applications, supporting sustainable bioprocessing and future industrial validation. Full article
(This article belongs to the Section Food Microbiology)
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18 pages, 2136 KB  
Article
Responses of Soil Fungal Community Structure, Co-Occurrence Networks, and Functions to Different Oak-Dominated Mixed Plantations
by Yanfang Wang, Xiaoqiu Yuan, Zhichao Li, Zhengyang Yan, Yage Li and Ling Liu
Plants 2026, 15(9), 1399; https://doi.org/10.3390/plants15091399 - 2 May 2026
Viewed by 359
Abstract
Quercus variabilis is one of the primary species for plantation regeneration across China’s warm-temperate and subtropical zones. However, its long-term monoculture leads to ecosystem instability. Soil fungi are essential for nutrient cycling and ecosystem functioning, yet their responses to oak-dominated mixed plantations remain [...] Read more.
Quercus variabilis is one of the primary species for plantation regeneration across China’s warm-temperate and subtropical zones. However, its long-term monoculture leads to ecosystem instability. Soil fungi are essential for nutrient cycling and ecosystem functioning, yet their responses to oak-dominated mixed plantations remain insufficiently understood. This study investigated the soil fungal communities among Q. variabilis monoculture (QV), mixed plantations of Q. variabilis and Platycladus orientalis (PO), Q. variabilis and Pinus tabuliformis (PT), and Q. variabilis, P. orientalis and P. tabuliformis (PPQ). The results showed that PO and PPQ plantations contained significantly higher concentrations of SOC, TN, and TP compared to QV monoculture. Ascomycota and Basidiomycota were identified as the dominant fungal phyla across four plantation types, with PO exhibiting the highest relative abundance of Ascomycota (60.85%) and fungal alpha diversity. The soil fungal communities across all plantations were predominantly saprotrophic, followed by mixotrophic modes. The relative abundance of saprotrophic fungi was significantly greater in the mixed plantations, peaking in PO at 44.69%. The soil fungal communities in both PO and PPQ plantations exhibited higher network interaction density. The SOC, TN, TP, water content, zinc, and β-glucosidase activity served as key environmental drivers of fungal community composition. Overall, the mixed plantation of Q. variabilis and P. orientalis most effectively improved soil fertility, enhanced fungal diversity, and increased network complexity, suggesting its potential as a sustainable afforestation strategy for oak-dominated ecosystems in the low hilly regions of western Henan. However, these findings are based on a single sampling period, and long-term monitoring is required to confirm its sustained ecological benefits. Full article
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22 pages, 1168 KB  
Article
Hydrochar as a Modulator of Soil Microbial Activity and Soil Biochemical Processes
by Francisco J. Moreno-Racero, Marta Velasco-Molina, Rafael López-Núñez and Heike Knicker
Agronomy 2026, 16(9), 917; https://doi.org/10.3390/agronomy16090917 (registering DOI) - 30 Apr 2026
Viewed by 246
Abstract
Hydrochar has emerged as a promising carbonaceous amendment to enhance soil quality, yet its short-term effects on soil carbon (C) and nitrogen (N) dynamics and microbial functioning remain poorly understood. Here, a 77-day greenhouse pot experiment was conducted using a Cambisol cultivated with [...] Read more.
Hydrochar has emerged as a promising carbonaceous amendment to enhance soil quality, yet its short-term effects on soil carbon (C) and nitrogen (N) dynamics and microbial functioning remain poorly understood. Here, a 77-day greenhouse pot experiment was conducted using a Cambisol cultivated with sunflower (Helianthus annuus L.) under two irrigation regimes simulating well-irrigated (WI) and water-deficit (WD) scenarios. Two doses of chicken-manure-derived hydrochar (3.25 and 6.5 t ha−1, corresponding to 2.35 and 4.69 g kg−1 of dry soil, respectively) and mineral fertilizer (MF) treatments providing equivalent N inputs were evaluated. Hydrochar promoted microbial growth and enhanced enzymatic and respiratory activities despite its low apparent C and nutrient input. After 77 days under WI, the addition of 6.5 t ha−1 hydrochar enhanced the activity of phenol oxidase (POA) and acid phosphomonesterase (AcPA). Concomitantly, the availability of soluble C and N increased, whereas total organic C (TOC) and N decreased relative to the initial values. These responses may suggest enhanced mineralization potentially related to early-stage priming processes. The increase in POA relative to β-glucosidase is in line with a functional shift from a predominant degradation of labile compounds towards an increased oxidation of more complex structures. This interpretation is supported by solid-state 13C NMR data, revealing a higher degradation index of the soil organic matter. Under WD, the overall effects of hydrochar were attenuated or suppressed, particularly those related to C and N dynamics, emphasizing the interactive influence of moisture and amendment dose. Overall, our results show that hydrochar can modulate short-term soil biochemical processes, partly through enhanced microbial responses. Full article
(This article belongs to the Section Soil and Plant Nutrition)
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19 pages, 5125 KB  
Article
Transcriptome and Weighted Gene Co-Expression Network Analysis Reveals Key Genes and Pathways in the Response of Litchi Embryogenic Callus to 2,4-Dichlorophenoxyacetic Acid Regulation
by Shujun Wang, Guo Wang, Fang Li, Huanling Li, Xiaoxu Li, Yeyuan Chen and Jiabao Wang
Horticulturae 2026, 12(5), 545; https://doi.org/10.3390/horticulturae12050545 - 29 Apr 2026
Viewed by 1051
Abstract
2,4-Dichlorophenoxyacetic acid (2,4-D) is a vital exogenous auxin for the induction and proliferation of litchi embryogenic callus. At present, its molecular regulation mechanism remains unclear. In this study, transcriptome sequencing samples were selected based on different cell growth phenotypes observed in ‘Feizixiao’ litchi [...] Read more.
2,4-Dichlorophenoxyacetic acid (2,4-D) is a vital exogenous auxin for the induction and proliferation of litchi embryogenic callus. At present, its molecular regulation mechanism remains unclear. In this study, transcriptome sequencing samples were selected based on different cell growth phenotypes observed in ‘Feizixiao’ litchi embryogenic callus cultured in liquid medium with or without 2,4-D. By integrating transcriptome profiling with weighted gene co-expression network analysis (WGCNA), we identified key genes and signaling pathways dynamically responsive to 2,4-D concentration changes. We identified 558 commonly differentially expressed genes (DEGs), of which 117 were up-regulated and 387 were down-regulated; functional enrichment analysis revealed significant enrichment in the “plant hormone signal transduction” and “phenylpropanoid biosynthesis” pathways. In the former pathway, genes such as AUX28, GH3.17, GH3.6, and ARR5 were up-regulated; in the latter, by comparison, β-glucosidase 47 and Peroxidase 61 exhibited increased expression levels induced by 2,4-D. Furthermore, among these DEGs, 57 transcription factors belonged to 24 families. Notably, VRN1, FEZ, and DOF5.4 were significantly and rapidly induced by 2,4-D. WGCNA results demonstrated a significant positive correlation between the yellow module and 2,4-D treatment. Small heat shock protein (sHSP) genes constituted the core hub genes in the yellow module. Through Venn analysis of DEGs and key modules, 38 cross-genes were identified, of which non-specific lipid-transfer protein-like genes (nsLTP) were found to be specifically up-regulated without 2,4-D. The transcription factors and genes identified work in synergy to ensure the formation and sustained proliferation of embryogenic callus by precisely regulating the dynamic balance of auxin and cytokinin within cells and maintaining the stability of cell structure. Our findings provide a crucial theoretical foundation for understanding the molecular mechanism of 2,4-D in regulating litchi embryogenic callus proliferation. Full article
(This article belongs to the Special Issue Multi-Omics-Driven Breeding for Tropical Horticultural Crops)
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18 pages, 2842 KB  
Article
Regulatory Effects of Nitrogen Fertilization on Soil Extracellular Enzyme Activity and Greenhouse Gas Emissions in Paddy Fields with Straw Return
by Lixin Zhang, Jiao Wang, Congling Zhu, Jiani Li, Qun Yang, Minjie Fu and Yongjun Wang
Agriculture 2026, 16(9), 964; https://doi.org/10.3390/agriculture16090964 - 28 Apr 2026
Viewed by 394
Abstract
Straw return improves paddy soil quality and nutrient cycling, but its combined effects with nitrogen application on extracellular enzyme activities and greenhouse gas emissions in cold-region paddies remain unclear. A field experiment was conducted in Northeast China under full straw return (8.8 t [...] Read more.
Straw return improves paddy soil quality and nutrient cycling, but its combined effects with nitrogen application on extracellular enzyme activities and greenhouse gas emissions in cold-region paddies remain unclear. A field experiment was conducted in Northeast China under full straw return (8.8 t ha−1) with six nitrogen rates (0, 110, 120, 130, 140, and 150 kg ha−1); conventional nitrogen application without straw return (130 kg ha−1) was the control (CK), while N0 distinguished straw input from nitrogen effects. Soil properties, extracellular enzyme activities, and CO2, CH4, and N2O emissions were measured 20, 50, 80, 110, and 140 days after straw return. At 140 days, compared with CK, straw return increased the NH4+-N and organic matter in the 0–15 cm soil layer by 41.75% and 28.69%, respectively, and reduced pH by 4.34%. Under N110–N150, straw return enhanced the carbon- and nitrogen-acquiring enzymes and oxidative enzymes by 15.88–162.23%. In particular, β-glucosidase, phenol oxidase, and peroxidase activities were significantly higher under N130–N140 than under CK. Compared with N150, N130–N140 maintained organic matter turnover without further increasing greenhouse gas emissions. Overall, under full straw incorporation in the Mollisol paddies of cool Northeast China, N130–N140 sustained high yield while balancing nutrient cycling, enzyme activity, and greenhouse gas mitigation. Full article
(This article belongs to the Section Agricultural Soils)
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13 pages, 3089 KB  
Article
In Silico Structural Characterization and Hypoglycemic Potential of a Novel Fucose-Specific Lectin (MEP5) from Morchella esculenta
by Wanchao Chen, Peng Liu, Wen Li, Di Wu, Zhong Zhang and Yan Yang
Foods 2026, 15(9), 1493; https://doi.org/10.3390/foods15091493 - 24 Apr 2026
Viewed by 334
Abstract
Natural food-derived proteins are increasingly explored as alternatives to synthetic inhibitors for managing Type 2 diabetes mellitus. Despite the recognized health-promoting properties of Morchella esculenta, the potential of its bioactive proteins to modulate glucose metabolism remains largely unexplored. This study systematically investigated [...] Read more.
Natural food-derived proteins are increasingly explored as alternatives to synthetic inhibitors for managing Type 2 diabetes mellitus. Despite the recognized health-promoting properties of Morchella esculenta, the potential of its bioactive proteins to modulate glucose metabolism remains largely unexplored. This study systematically investigated the structural basis and hypoglycemic mechanisms of MEP5 (Morchella esculenta Protein 5), a fucose-specific lectin from M. esculenta, using an integrated in silico pipeline. MEP5 (33.12 kDa) adopts a stable β-sheet-rich conformation and harbors a conserved fucose-binding carbohydrate-recognition domain. Protein–protein docking revealed that intact MEP5 binds directly to surface glycans of human α-glucosidase, generating steric hindrance that obstructs the catalytic pocket. Simulated gastrointestinal digestion yielded a highly bioavailable peptide profile. Following a rigorous multiparametric screening for toxicity, allergenicity, and water solubility, 11 short oligopeptides were identified as potent dipeptidyl peptidase-IV (DPP-IV) inhibitors. Molecular docking demonstrated that the top-ranked peptides, QPPR, DGTY, and DPDSH, occupy the S2 pocket of DPP-IV and form hydrogen bonds with catalytic triad residues (Ser630/His740). These findings delineate a dual-stage hypoglycemic mechanism, pre-digestion enzymatic blockade and post-digestion incretin regulation, and support the potential of MEP5 as a multifunctional candidate for glucose homeostasis-oriented functional foods. Full article
(This article belongs to the Section Nutraceuticals, Functional Foods, and Novel Foods)
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18 pages, 1235 KB  
Article
Biochar and Nitrogen Synergistically Regulate Soil Carbon Mineralization by Enhancing Aggregate Stability and Altering Microbial Function in Intensive Vegetable Systems
by Xi Zhang, Chenchen Xue, Xiaoxiao Liu, Lihong Xue and Zhengqin Xiong
Agronomy 2026, 16(8), 825; https://doi.org/10.3390/agronomy16080825 - 17 Apr 2026
Viewed by 549
Abstract
Intensive nitrogen (N) fertilization in greenhouse vegetable systems degrades soil structure and accelerates soil carbon (C) mineralization. Biochar application can alleviate these adverse effects by enhancing aggregate stability and mediating microbially driven nutrient cycling, yet its effects across aggregate fractions remain poorly understood. [...] Read more.
Intensive nitrogen (N) fertilization in greenhouse vegetable systems degrades soil structure and accelerates soil carbon (C) mineralization. Biochar application can alleviate these adverse effects by enhancing aggregate stability and mediating microbially driven nutrient cycling, yet its effects across aggregate fractions remain poorly understood. Here, we investigated how biochar (0, 20, 40 t ha−1) and N interact to affect aggregate stability, C mineralization, nutrient status, and microbial properties in bulk soil and four aggregate classes (large macroaggregates: LMA, > 2000 μm; small macroaggregates: SMA, 250–2000 μm; microaggregates: MA, 53–250 μm; silt + clay: S + C, < 53 μm) in vegetable soil after a 60-day incubation. Results showed that biochar–N co-application increased mean weight diameter by 27.4–30.5% and elevated soil total organic C (TOC) in LMA by 9.11–12.0% and in MA by 8.77–20.2% relative to the N-only treatment. It also reduced β-glucosidase and oxidase activities, as well as fungal and G-bacterial abundance. Biochar amendment suppressed TOC mineralization by 2.7–24.6% in bulk soil and aggregate fractions, while boosting potentially mineralizable C pools by 12.5–155.7%, and thereby increasing overall mineralization potential. Structural equation modeling revealed the size-dependent regulatory mechanisms underlying these observations. Aggregate stability directly inhibited CO2 emissions in bulk soil and SMA, while the effects in MA and S + C fractions were mediated by shifts in nutrient stoichiometry and hydrolase activities. Our findings clarified the size-dependent mechanisms by which biochar–N co-application promoted soil C sequestration, providing a theoretical basis for the sustainable management of intensive vegetable systems. Full article
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Article
Valorization of Brewer’s Spent Grains via Aspergillus oryzae Solid-State Fermentation: Production of Lignocellulolytic Enzymes for Biorefinery Applications
by Anahid Esparza-Vasquez, Sara Saldarriaga-Hernandez, Rosa Leonor González-Díaz, Tomás García-Cayuela and Danay Carrillo-Nieves
Fermentation 2026, 12(4), 197; https://doi.org/10.3390/fermentation12040197 - 14 Apr 2026
Viewed by 727
Abstract
Brewer’s spent grain (BSG) is an abundant lignocellulosic by-product whose valorization can support circular bioeconomy strategies. This study evaluated BSG bioconversion by Aspergillus oryzae ATCC 10124 under solid-state fermentation (SSF) to produce lignocellulolytic enzymes and release second-generation (2G) sugars relevant to biorefinery applications. [...] Read more.
Brewer’s spent grain (BSG) is an abundant lignocellulosic by-product whose valorization can support circular bioeconomy strategies. This study evaluated BSG bioconversion by Aspergillus oryzae ATCC 10124 under solid-state fermentation (SSF) to produce lignocellulolytic enzymes and release second-generation (2G) sugars relevant to biorefinery applications. SSF was monitored over 0–10 days, and FPase, endo-cellulase, β-glucosidase, xylanase, mannanase, amylase, and ligninolytic enzyme activities were quantified. Enzymatic crude extracts were further assessed in SDS-PAGE analysis. Glucose, cellobiose, xylose and arabinose release and consumption were tracked throughout fermentation, and substrate transformation was supported by FTIR. The secretome exhibited a predominantly hydrolytic profile, with maximal hemicellulolytic and cellulolytic activity around days 2–4, as well as sustained amylase activity. Ligninolytic activity was not detected. Sugar profiles indicated rapid early hydrolysis of glucose, followed by progressive pentose release. The stabilization and decline were consistent with fungal uptake. Changes in the carbohydrate fingerprint and SDS–PAGE banding supported structural polysaccharide remodeling and hydrolytic protein secretion. Thus, this SSF platform confirmed certain potential for low-cost cellulolytic and hemicellulolytic enzyme generation. However, because sugar accumulation was temporary and followed by consumption, this system is best interpreted as a biological pretreatment and enzyme-generation step that supports subsequent downstream valorization. Full article
(This article belongs to the Special Issue Valorization of Food Waste Using Solid-State Fermentation Technology)
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