Search Results (12)

This study proposes an Automatic Branch Modeling (ABM) framework that combines AdTree and AdQSM algorithms to reconstruct individual tree models and estimate timber volume from fused Hand-held Laser Scanners (HLS) and Unmanned Aerial Vehicle Laser Scanners (UAV-LS) point cloud data. The research focuses on two 50 × 50 m primary tropical rainforest plots in Hainan Island, China, characterized by dense and vertically stratified vegetation. Key steps include multi-source point cloud registration and noise removal, individual tree segmentation using the Comparative Shortest Path (CSP) algorithm, extraction of diameter at breast height (DBH) and tree height, and 3D reconstruction and volume estimation via cylindrical fitting and convex polyhedron decomposition. Results demonstrate high accuracy in parameter extraction, with DBH estimation achieving R² = 0.89–0.90, RMSE = 2.93–3.95 cm and RMSE% = 13.95–14.75%, while tree height estimation yielded R² = 0.89–0.94, RMSE = 1.26–1.81 m and RMSE% = 9.41–13.2%. Timber volume estimates showed strong agreement with binary volume models (R² = 0.90–0.94, RMSE = 0.10–0.18 m³, RMSE% = 32.33–34.65%), validated by concordance correlation coefficients (CCC) of 0.95–0.97. The fusion of HLS (ground-level trunk details) and UAV-LS (canopy structure) data significantly improved structural completeness, overcoming occlusion challenges in dense forests. This study highlights the efficacy of multi-source LiDAR fusion and 3D modeling for precise forest inventory in complex ecosystems. The ABM framework provides a scalable, non-destructive alternative to traditional methods, supporting carbon stock assessment and sustainable forest management in tropical rainforests. Future work should refine individual tree segmentation and wood-leaf separation to further enhance accuracy in heterogeneous environments. Full article

Iron is critical for brain development, metabolism, and function; however, dysregulated iron disposition contributes to neurological diseases. Many neuroimaging techniques have enabled detection of iron susceptibility, and quantitative susceptibility mapping (QSM) offers a sensitive magnetic resonance imaging (MRI) technique for quantifying brain iron. To elucidate the functional role of cerebral iron and clarify the utility of QSM in establishing iron as a potential biomarker, this review synthesizes cellular and regional behaviours of iron from physiological aging to disease conditions, with a focus on neurodegeneration such as Alzheimer’s disease (AD), Parkinson’s disease (PD), and multiple sclerosis (MS), as well as cerebral small vessel disease (CSVD) as cerebrovascular manifestation. Distinct patterns of iron distribution in deep gray matter and selective cortical regions are associated with motor and cognitive impairment, while the interaction between iron, vascular integrity, and glial function further stresses its pathological relevance. QSM of iron may, thereby, serve as a marker to monitor iron-related disease progression and facilitate intervention. Temporal dynamics of iron in brain pathology remain underexplored, and we emphasized the need for longitudinal mapping and multi-modality biomarker integration. Establishing iron as a clinically relevant imaging biomarker requires continued investigation into its topographical, molecular, and functional correlates across aging and disease trajectories. Full article

Detailed three-dimensional (3D) radiative transfer models (RTMs) enable a clear understanding of the interactions between light, biochemistry, and canopy structure, but they are rarely explicitly evaluated due to the availability of 3D canopy structure data, leading to a lack of knowledge on how canopy structure/leaf characteristics affect radiative transfer processes within forest ecosystems. In this study, the newly released 3D RTM Eradiate was extensively evaluated based on both virtual scenes reconstructed using the quantitative structure model (QSM) by adding leaves to point clouds generated from terrestrial laser scanning (TLS) data, and real scenes monitored by Sentinel-2 in a typical temperate deciduous forest. The effects of structural parameters on reflectance were investigated through sensitivity analysis, and the performance of the 3D model was compared with the 5-Scale and PROSAIL radiative transfer models. The results showed that the Eradiate-simulated reflectance achieved good agreement with the Sentinel-2 reflectance, especially in the visible and near-infrared spectral regions. Furthermore, the simulated reflectance, particularly in the blue and shortwave infrared spectral bands, was clearly shown to be influenced by canopy structure using the Eradiate model. This study demonstrated that the Eradiate RTM, based on the 3D explicit representation, is capable of providing accurate radiative transfer simulations in the temperate deciduous forest and hence provides a basis for understanding tree interactions and their effects on ecosystem structure and functions. Full article

Forests play an important role in promoting carbon cycling and mitigating the urban heat island effect as one of the world’s major carbon storages. Scientifically quantifying tree biomass is the basis for assessing tree carbon storage and other ecosystem functions. In this study, a sample plot of Populus tomentosa plantation in the Olympic Forest Park in Beijing was selected as the research object. Point cloud data from three types of laser scanners, including terrestrial laser scanner (TLS), backpack laser scanner (BLS), and handheld laser scanner (HLS), were used to estimate the biomass of single tree trunks, branches, leaves, and aboveground total biomass based on the Allometric Biomass Model (ABM) and Advanced Quantitative Structure Model (AdQSM). The following conclusions were drawn from the estimation results: (1) For the three types of laser scanner point clouds, the biomass estimation values obtained using the AdQSM model were generally higher than those obtained using the Allometric Biomass Model. However, the estimation values obtained using the two models were similar, especially for tree trunks and total biomass. (2) For total biomass and individual biomass components of single trees, the results obtained from handheld and terrestrial laser scanner point clouds are consistent; however, they show some differences from the results obtained from backpack-mounted point clouds. This study further enriches the methodological system for estimating forest biomass, providing a theoretical basis and reference for more accurate estimates of forest biomass and more sustainable forest management. Full article

Timely acquisition of forest structure is crucial for understanding the dynamics of ecosystem functions. Despite the fact that the combination of different quantitative structure models (QSMs) and point cloud sources (ALS and DAP) has shown great potential to characterize tree structure, few studies have addressed their pros and cons in alpine temperate deciduous forests. In this study, different point clouds from UAV-mounted LiDAR and DAP under leaf-off conditions were first processed into individual tree point clouds, and then explicit 3D tree models of the forest were reconstructed using the TreeQSM and AdQSM methods. Structural metrics obtained from the two QSMs were evaluated based on terrestrial LiDAR (TLS)-based surveys. The results showed that ALS-based predictions of forest structure outperformed DAP-based predictions at both plot and tree levels. TreeQSM performed with comparable accuracy to AdQSM for estimating tree height, regardless of ALS (plot level: 0.93 vs. 0.94; tree level: 0.92 vs. 0.92) and DAP (plot level: 0.86 vs. 0.86; tree level: 0.89 vs. 0.90) point clouds. These results provide a robust and efficient workflow that takes advantage of UAV monitoring for estimating forest structural metrics and suggest the effectiveness of LiDAR in temperate deciduous forests. Full article

This paper focuses on the current urgent demand for the accurate measurement of forest inventory variables in the fields of forestry carbon sink measurement, ecosystem research, and forest resource conservation, and proposes the use of images to construct a three-dimensional measurement model of forest inventory variables, which is a new method to realize the automatic extraction of forest inventory variables. This method obtains sample site information by using high-definition images taken in the forest by a smartphone, which significantly improves the field operation efficiency and simple operation, and effectively alleviates the problems of long field operation times, complicated operations, and expensive equipment used by current methods for obtaining forest inventory variables. We propose to optimize the Eps parameters of the DBSCAN algorithm based on the MVO algorithm for point cloud clustering to obtain single wood point clouds, which improves the accuracy of the model and can effectively solve the problem of large interference from human factors. The scale coefficients of the image and the actual model are obtained by the actual measurement of tree height and diameter at breast height to complete the construction of the three-dimensional measurement model of the stand and are then combined with the AdQSM algorithm to realize the automatic extraction of forest inventory variables, which provides a new interdisciplinary method for the comprehensive extraction of forest inventory variables. The accuracy of the model measured in the experimental sample site of Fraxinus mandshurica Rupr was as follows: the absolute error of tree height measurement ranged from 0.05 to 0.37 m, the highest relative error of measurement was 2.03%, and the average relative error was 1.53%; for the absolute error of diameter at breast height, measurement ranged from 0.007 to 0.057 m, the highest relative error of measurement was 7.358%, and the average relative error was 3.616%. The method proposed in this study can be directly applied to the process of acquiring and visualizing the variables of forest inventory in the field of ecological research, which has good flexibility and can meet individual research needs. Full article

Forest aboveground biomass (AGB) plays a key role in assessing forest productivity. In this study, we extracted individual tree structural parameters using backpack LiDAR, assessed their accuracy using terrestrial laser scanning (TLS) data and field measurements as reference values, and reconstructed 3D models of trees based on parameter-optimized quantitative structural models (AdQSM). The individual tree AGB was estimated based on individual tree volumes obtained from the tree model reconstruction, combined with the basic wood density values of specific tree species. In addition, the AGB calculated using the allometric biomass models was validated to explore the feasibility of nondestructive estimation of individual tree AGB by backpack LiDAR. We found that (1) the backpack LiDAR point cloud extracted individual tree diameter at breast height (DBH) with high accuracy. In contrast, the accuracy of the tree height extraction was low; (2) the optimal parameter values of the AdQSM reconstruction models for Larix gmelinii and Betula platyphylla were HS = 0.4 m and HS = 0.6 m, respectively; (3) the individual tree AGB estimated based on the backpack LiDAR and AdQSM fit well with the reference values. Our study confirms that backpack LiDAR can nondestructively estimate individual tree AGB, which can provide a reliable basis for further forest resource management and carbon stock estimation. Full article

Accurate modeling of windbreaks is essential for the precise assessment of wind protection performance. However, in most windbreak studies, the models used the approximate shape of the simulated trees, resulting in significant differences between the simulated results and the actual situation. In this study, terrestrial laser scanning (TLS) was used to extract tree parameters, which were used in a quantitative structural model (AdQSM) to recreate the tree structure and restore the wind field environment using the computational fluid dynamics software PHOENICS. In addition, we compared the bias, precision, and accuracy of porosity of Ginkgo biloba (with elliptical crown) and Populus alba (with conical crown), which have been commonly used in previous windbreak studies. The results showed that AdQSM has a high reduction rate and ability to reproduce the field conditions of the study area. After wind field simulation, the wind speed root mean square errors of the point cloud model at three heights (3, 6, and 9 m) were 0.272, 0.377, and 0.437 m/s, respectively, and the wind speed correlation coefficients r were 0.967, 0.965, and 0.937, respectively, which were significantly more accurate than those of the remaining two structures. Finally, the porosity of the windbreak forest obtained using the modeled sample plot showed a higher correlation with the wind permeability coefficient than that obtained using the existing approach. Windbreak models with three different porosities under the same conditions had different effects on the wind environment, particularly the location of the maximum wind speed reduction, variation of wind speed with porosity, and recovery rate of leeward wind speed. TLS can accurately extract windbreak factors and calculate the porosity, thus greatly improving the reliability of windbreak effect research in windbreak forests. This study provides a promising direction for future research related to the simulation of windbreak effects in windbreak forests. Full article

The aim of this study was to examine the relationship between the presence of glucose hypometabolism (GHM) and brain iron accumulation (BIA), two potential pathological mechanisms in neurodegenerative disease, in different regions of the brain in people with late-onset Alzheimer’s disease (AD) or Parkinson’s disease (PD). Studies that conducted fluorodeoxyglucose positron emission tomography (FDG-PET) to map GHM or quantitative susceptibility mapping—magnetic resonance imaging (QSM–MRI) to map BIA in the brains of patients with AD or PD were reviewed. Regions of the brain where GHM or BIA were reported in each disease were compared. In AD, both GHM and BIA were reported in the hippocampus, temporal, and parietal lobes. GHM alone was reported in the cingulate gyrus, precuneus and occipital lobe. BIA alone was reported in the caudate nucleus, putamen and globus pallidus. In PD, both GHM and BIA were reported in thalamus, globus pallidus, putamen, hippocampus, and temporal and frontal lobes. GHM alone was reported in cingulate gyrus, caudate nucleus, cerebellum, and parietal and occipital lobes. BIA alone was reported in the substantia nigra and red nucleus. GHM and BIA are observed independent of one another in various brain regions in both AD and PD. This suggests that GHM is not always necessary or sufficient to cause BIA and vice versa. Hypothesis-driven FDG-PET and QSM–MRI imaging studies, where both are conducted on individuals with AD or PD, are needed to confirm or disprove the observations presented here about the potential relationship or lack thereof between GHM and BIA in AD and PD. Full article

Penicillium expansum is a necrotrophic wound fungal pathogen that secrets virulence factors to kill host cells including cell wall degrading enzymes (CWDEs), proteases, and mycotoxins such as patulin. During the interaction between P. expansum and its fruit host, these virulence factors are strictly modulated by intrinsic regulators and extrinsic environmental factors. In recent years, there has been a rapid increase in research on the molecular mechanisms of pathogenicity in P. expansum; however, less is known regarding the bacteria–fungal communication in the fruit environment that may affect pathogenicity. Many bacterial species use quorum-sensing (QS), a population density-dependent regulatory mechanism, to modulate the secretion of quorum-sensing signaling molecules (QSMs) as a method to control pathogenicity. N-acyl homoserine lactones (AHLs) are Gram-negative QSMs. Therefore, QS is considered an antivirulence target, and enzymes degrading these QSMs, named quorum-quenching enzymes, have potential antimicrobial properties. Here, we demonstrate that a bacterial AHL lactonase can also efficiently degrade a fungal mycotoxin. The mycotoxin is a lactone, patulin secreted by fungi such as P. expansum. The bacterial lactonase hydrolyzed patulin at high catalytic efficiency, with a k_cat value of 0.724 ± 0.077 s⁻¹ and K_M value of 116 ± 33.98 μM. The calculated specific activity (k_cat/K_M) showed a value of 6.21 × 10³ s⁻¹M⁻¹. While the incubation of P. expansum spores with the purified lactonase did not inhibit spore germination, it inhibited colonization by the pathogen in apples. Furthermore, adding the purified enzyme to P. expansum culture before infecting apples resulted in reduced expression of genes involved in patulin biosynthesis and fungal cell wall biosynthesis. Some AHL-secreting bacteria also express AHL lactonase. Here, phylogenetic and structural analysis was used to identify putative lactonase in P. expansum. Furthermore, following recombinant expression and purification of the newly identified fungal enzyme, its activity with patulin was verified. These results indicate a possible role for patulin and lactonases in inter-kingdom communication between fungi and bacteria involved in fungal colonization and antagonism and suggest that QQ lactonases can be used as potential antifungal post-harvest treatment. Full article

The quantitative structure model (QSM) contains the branch geometry and attributes of the tree. AdQSM is a new, accurate, and detailed tree QSM. In this paper, an automatic modeling method based on AdQSM is developed, and a low-cost technical scheme of tree structure modeling is provided, so that AdQSM can be freely used by more people. First, we used two digital cameras to collect two-dimensional (2D) photos of trees and generated three-dimensional (3D) point clouds of plot and segmented individual tree from the plot point clouds. Then a new QSM-AdQSM was used to construct tree model from point clouds of 44 trees. Finally, to verify the effectiveness of our method, the diameter at breast height (DBH), tree height, and trunk volume were derived from the reconstructed tree model. These parameters extracted from AdQSM were compared with the reference values from forest inventory. For the DBH, the relative bias (rBias), root mean square error (RMSE), and coefficient of variation of root mean square error (rRMSE) were 4.26%, 1.93 cm, and 6.60%. For the tree height, the rBias, RMSE, and rRMSE were—10.86%, 1.67 m, and 12.34%. The determination coefficient (R²) of DBH and tree height estimated by AdQSM and the reference value were 0.94 and 0.86. We used the trunk volume calculated by the allometric equation as a reference value to test the accuracy of AdQSM. The trunk volume was estimated based on AdQSM, and its bias was 0.07066 m³, rBias was 18.73%, RMSE was 0.12369 m³, rRMSE was 32.78%. To better evaluate the accuracy of QSM’s reconstruction of the trunk volume, we compared AdQSM and TreeQSM in the same dataset. The bias of the trunk volume estimated based on TreeQSM was −0.05071 m³, and the rBias was −13.44%, RMSE was 0.13267 m³, rRMSE was 35.16%. At 95% confidence interval level, the concordance correlation coefficient (CCC = 0.77) of the agreement between the estimated tree trunk volume of AdQSM and the reference value was greater than that of TreeQSM (CCC = 0.60). The significance of this research is as follows: (1) The automatic modeling method based on AdQSM is developed, which expands the application scope of AdQSM; (2) provide low-cost photogrammetric point cloud as the input data of AdQSM; (3) explore the potential of AdQSM to reconstruct forest terrestrial photogrammetric point clouds. Full article

Forest above-ground biomass (AGB) can be estimated based on light detection and ranging (LiDAR) point clouds. This paper introduces an accurate and detailed quantitative structure model (AdQSM), which can estimate the AGB of large tropical trees. AdQSM is based on the reconstruction of 3D tree models from terrestrial laser scanning (TLS) point clouds. It represents a tree as a set of closed and complete convex polyhedra. We use AdQSM to model 29 trees of various species (total 18 species) scanned by TLS from three study sites (the dense tropical forests of Peru, Indonesia, and Guyana). The destructively sampled tree geometry measurement data is used as reference values to evaluate the accuracy of diameter at breast height (DBH), tree height, tree volume, branch volume, and AGB estimated from AdQSM. After AdQSM reconstructs the structure and volume of each tree, AGB is derived by combining the wood density of the specific tree species from destructive sampling. The AGB estimation from AdQSM and the post-harvest reference measurement data show a satisfying agreement. The coefficient of variation of root mean square error (CV-RMSE) and the concordance correlation coefficient (CCC) are 20.37% and 0.97, respectively. AdQSM provides accurate tree volume estimation, regardless of the characteristics of the tree structure, without major systematic deviations. We compared the accuracy of AdQSM and TreeQSM in modeling the volume of 29 trees. The tree volume from AdQSM is compared with the reference value, and the determination coefficient (R²), relative bias (rBias), and CV-RMSE of tree volume are 0.96, 6.98%, and 22.62%, respectively. The tree volume from TreeQSM is compared with the reference value, and the R², relative Bias (rBias), and CV-RMSE of tree volume are 0.94, −9.69%, and 23.20%, respectively. The CCCs between the volume estimates based on AdQSM, TreeQSM, and the reference values are 0.97 and 0.96. AdQSM also models the branches in detail. The volume of branches from AdQSM is compared with the destructive measurement reference data. The R², rBias, and CV-RMSE of the branches volume are 0.97, 12.38%, and 36.86%, respectively. The DBH and height of the harvested trees were used as reference values to test the accuracy of AdQSM’s estimation of DBH and tree height. The R², rBias, and CV-RMSE of DBH are 0.94, −5.01%, and 9.06%, respectively. The R², rBias, and CV-RMSE of the tree height were 0.95, 1.88%, and 5.79%, respectively. This paper provides not only a new QSM method for estimating AGB based on TLS point clouds but also the potential for further development and testing of allometric equations. Full article