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14 pages, 1012 KB  
Article
Productivity and Forage Quality of Alfalfa Response to Potassium Fertilizer: A Field Study in Inner Mongolian Plateau
by Yuntao Wang, Lele Cui, Shenghao Liu, Wenxuan Li, Zhenyi Li, Wenxing Ye and Linqing Yu
Agronomy 2025, 15(10), 2328; https://doi.org/10.3390/agronomy15102328 - 1 Oct 2025
Abstract
The Inner Mongolian Plateau is a critical region for the development of herbivorous animal husbandry in China. However, its harsh climate and poor soil quality have constrained the sustainable growth of the alfalfa industry. This 3-year field study investigated the effects of potassium [...] Read more.
The Inner Mongolian Plateau is a critical region for the development of herbivorous animal husbandry in China. However, its harsh climate and poor soil quality have constrained the sustainable growth of the alfalfa industry. This 3-year field study investigated the effects of potassium (K) fertilizer on the productivity and forage quality of alfalfa (Medicago sativa L. cv. ‘WL168’) in such specific conditions of the region. Five rates of K fertilizer (0 (CK), 100, 200, 300, and 400 kg ha−1 of K2O) were applied in three split applications. Forage harvests occurred three times annually in 2023 and 2024, and yield, yield components, and forage quality were determined. The results showed that the forage yield of alfalfa increased initially and then decreased with the rising K application rates, which paralleled the changes in the plant density, and plant height, especially the mass shoot−1; forage yield was mainly correlated with mass shoot−1. Appropriate K fertilizer improved forage quality, especially in 2024. With increasing application, crude protein (CP) and total digestible nutrients (TDNs) first rose then declined, whereas neutral detergent fiber (NDF) and acid detergent fiber (ADF) decreased steadily, leading to a consistent rise in the relative feeding value (RFV). Comprehensively considering both yield and quality under such condition, a K fertilizer application rate of 273.2 kg ha−1 of K2O is suggested as a reference for this region. Full article
(This article belongs to the Special Issue Fertility Management for Higher Crop Productivity)
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31 pages, 25510 KB  
Article
Geopolymer Foams Loaded with Diatomite/Paraffin Granules for Enhanced Thermal Energy Storage
by Agnieszka Przybek
Materials 2025, 18(19), 4512; https://doi.org/10.3390/ma18194512 - 28 Sep 2025
Abstract
This paper presents the development and characteristics of geopolymer foams modified with paraffin-based phase change materials (PCMs) encapsulated in diatomite. The aim was to increase both the thermal insulation and heat storage capacity of the foams while maintaining sufficient mechanical strength for construction [...] Read more.
This paper presents the development and characteristics of geopolymer foams modified with paraffin-based phase change materials (PCMs) encapsulated in diatomite. The aim was to increase both the thermal insulation and heat storage capacity of the foams while maintaining sufficient mechanical strength for construction applications. Eleven variants of composites with different PCM fractions (5–10% by mass) and grain sizes (<1.6 mm to >2.5 mm) were synthesized and tested. The inclusion of PCM encapsulated in diatomite modified the porous structure: the total porosity increased from 6.6% in the reference sample to 19.6% for the 1.6–1.8 mm_10% wt. variant, with pore diameters ranging from ~4 to 280 µm. Thermal conductivity (λ) ranged between 0.090–0.129 W/m·K, with the lowest values observed for composites 2.0–2.5 mm_5–10% wt. (≈0.090–0.091 W/m·K), which also showed high thermal resistance (R ≈ 0.287–0.289 m2·K/W). The specific heat (Cp) increased from 1.28 kJ/kg·K (reference value) to a maximum value of 1.87 kJ/kg·K for the 2.0–2.5 mm_10% mass variant, confirming the effective energy storage capacity of PCM-modified foams. Mechanical tests showed compressive strength values in the range of 0.7–3.1 MPa. The best structural performance was obtained for the 1.6–1.8 mm_10% wt. variant (3.1 MPa), albeit with a higher λ (≈0.129 W/m·K), illustrating the classic trade-off between porosity-based insulation and mechanical strength. SEM microstructural analysis and mercury porosimetry confirmed the presence of mesopores, which determine both thermal and mechanical properties. The results show that medium-sized PCM fractions (1.6–2.0 mm) with moderate content (≈10% by weight) offer the most favorable compromise between insulation and strength, while thicker fractions (2.0–2.5 mm) maximize thermal energy storage capacity. These findings confirm the possibility of incorporating natural PCMs into geopolymer foams to create multifunctional materials for sustainable and energy-efficient building applications. A unique contribution to this work is the use of diatomite as a natural PCM carrier, ensuring stability, compatibility, and environmental friendliness compared to conventional encapsulation methods. Full article
(This article belongs to the Special Issue Advances in Function Geopolymer Materials—Second Edition)
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25 pages, 7550 KB  
Article
CG-Based Stratification of 8-mers Highlights Functional Roles and Phylogenetic Divergence Markers
by Guojun Liu, Hu Meng, Zhenhua Yang, Guoqing Liu, Yongqiang Xing and Ningkun Xiao
Int. J. Mol. Sci. 2025, 26(19), 9477; https://doi.org/10.3390/ijms26199477 - 27 Sep 2025
Abstract
K-mer analysis is a powerful tool for understanding genome structure and evolution. A “k-mer” refers to a short DNA sequence made up of k nucleotides (where k is a specific integer), while an “m-mer” is a similar concept but with a shorter sequence [...] Read more.
K-mer analysis is a powerful tool for understanding genome structure and evolution. A “k-mer” refers to a short DNA sequence made up of k nucleotides (where k is a specific integer), while an “m-mer” is a similar concept but with a shorter sequence length. The functional mechanisms of CG-containing k-mers, as well as their potential role in evolutionary processes, remain unclear. To explore this issue, we analyzed 8-mers in several species with varying genomic complexities and evolutionary divergences: Homo sapiens, Saccharomyces cerevisiae, Bombyx mori, Ciona intestinalis, Danio rerio, and Caenorhabditis elegans, which were grouped by CG dinucleotide content (0CG, 1CG, and 2CG). We examined the relative frequencies of shorter m-mers (with m = 3 and 4) within each CG-defined group, using information-theoretic, distance-based, and angular metrics. Our results show that 0CG motifs follow random patterns, while 1CG and 2CG motifs display significant deviations, likely due to functional constraints such as nucleosome-binding and CpG island association. The observed unimodal distribution of 8-mers arises from the convergence of the three CG-defined groups. Among them, the 2CG group shows the highest divergence in m-mer composition, followed by 1CG, reflecting varying degrees of selective pressure. Furthermore, species-specific differences in CG-classified 8-mer patterns could provide valuable insights into phylogenetic relationships. Through extensive comparison, we explore how CG content and sequence composition influence genomic organization and contribute to evolutionary divergence across different taxa. These findings deepen our understanding of short motif functions, genome organization, and sequence evolution. Full article
(This article belongs to the Special Issue Statistical Approaches to Omics Data: Searching for Biological Truth)
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13 pages, 378 KB  
Article
Effect of Dietary Protein Levels on Performance and Health Status of Adult Companion Rabbits
by Bianca Palumbo and Antonella Dalle Zotte
Animals 2025, 15(19), 2784; https://doi.org/10.3390/ani15192784 - 24 Sep 2025
Viewed by 120
Abstract
Three isoenergy diets with different crude protein (CP) levels (H = 175, M = 173, and L = 165 g/kg, as is), were fed to 117 sex balanced rabbits (coloured dwarf breed) from 28 to 45 weeks of age. Feed intake, body weight, [...] Read more.
Three isoenergy diets with different crude protein (CP) levels (H = 175, M = 173, and L = 165 g/kg, as is), were fed to 117 sex balanced rabbits (coloured dwarf breed) from 28 to 45 weeks of age. Feed intake, body weight, and fatness were unaffected by the dietary treatment. By reducing dietary CP content, rabbits in group L had a significantly reduced proportion of digestible protein (DP) relative to maintenance requirements compared to group H; p < 0.001), but still exceeding their DP needs. The initial body weight of females was significantly greater than that of males, a difference maintained throughout the study period. Males consumed more feed than females (86.0 vs. 75.2 g/d, p < 0.001) and at 45th week, the skin fold width of males was higher than that of females (p < 0.001). DP balance remained positive in both sexes but was higher in males than females (+3.37 vs. +2.50 g DP/d; p < 0.001). Contrarily, the energy balance was positive in males (+57.9 kJ DE/d) and negative in females (−20.3 kJ DE/d). In conclusion, a dietary CP level of 165 g/kg is considered adequate for adult companion rabbits at maintenance. It is therefore advisable to diversify diets by sex to better meet their nutritional requirements. Full article
(This article belongs to the Collection Sustainable Animal Nutrition and Feeding)
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19 pages, 3467 KB  
Article
Lubrication Mechanism and Establishment of a Three-Phase Lubrication Model for SCCO2-MQL Ultrasonic Vibration Milling of SiCp/Al Composites
by Bowen Wang and Huiping Zhang
Machines 2025, 13(9), 879; https://doi.org/10.3390/machines13090879 - 22 Sep 2025
Viewed by 215
Abstract
SiCp/Al composites (Silicon Carbide Particle-Reinforced Aluminum Matrix Composites), due to their light weight, high strength, and superior wear resistance, are extensively utilized in aerospace and other sectors; nonetheless, they are susceptible to tool wear and surface imperfections during machining, which negatively impact overall [...] Read more.
SiCp/Al composites (Silicon Carbide Particle-Reinforced Aluminum Matrix Composites), due to their light weight, high strength, and superior wear resistance, are extensively utilized in aerospace and other sectors; nonetheless, they are susceptible to tool wear and surface imperfections during machining, which negatively impact overall machining performance. Supercritical carbon dioxide minimal quantity lubrication (SCCO2-MQL) is an environmentally friendly and efficient lubrication method that significantly improves interfacial lubricity and thermal stability. Nonetheless, current lubrication models are predominantly constrained to gas–liquid two-phase scenarios, hindering the characterization of the three-phase lubrication mechanism influenced by the combined impacts of SCCO2 phase transition and ultrasonic vibration. This study formulates a lubricant film thickness model that incorporates droplet atomization, capillary permeation, shear spreading, and three-phase modulation while introducing a pseudophase enhancement factor βps(p,T) to characterize the phase fluctuation effect of CO2 in the critical region. Simulation analysis indicates that, with an ultrasonic vibration factor Af = 1200 μm·kHz, a lubricant flow rate Qf = 16 mL/h, and a pressure gradient Δptot = 6.0 × 105 Pa/m, the lubricant film thickness attains its optimal value, with Δptot having the most pronounced effect on the film thickness (normalized sensitivity S = 0.488). The model results align with the experimental trends, validating its accuracy and further elucidating the nonlinear regulation of the film-forming process by various parameters within the three-phase synergistic lubrication mechanism. This research offers theoretical backing for the enhancement of performance and the expansion of modeling in SCCO2-MQL lubrication systems. Full article
(This article belongs to the Special Issue Machine Tools for Precision Machining: Design, Control and Prospects)
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20 pages, 623 KB  
Article
The Influence of Core-Periphery Structure on Information Diffusion over Social Networks
by Guiyuan Fu and Hejun Liang
Mathematics 2025, 13(18), 3048; https://doi.org/10.3390/math13183048 - 22 Sep 2025
Viewed by 208
Abstract
While core-periphery (CP) structures are a fundamental property of many social networks, their influence on information diffusion remains insufficiently understood, especially for complex contagions that require social reinforcement. To address this research gap, this paper investigates the role of core-periphery (CP) structure on [...] Read more.
While core-periphery (CP) structures are a fundamental property of many social networks, their influence on information diffusion remains insufficiently understood, especially for complex contagions that require social reinforcement. To address this research gap, this paper investigates the role of core-periphery (CP) structure on information diffusion using the Maki-Thompson model. Both simple contagion and complex contagion scenarios are analyzed through extensive numerical simulations and theoretical analysis. Our results reveal several key insights. First, a stronger CP structure facilitates broader information dissemination compared to a weaker core-periphery structure. Second, strong CP networks are particularly vulnerable to targeted interventions; immunizing core nodes is highly effective at impeding diffusion, especially for simple and small-k complex contagions. Third, counterintuitively, CP structure significantly hinders the spread of complex contagions, requiring a higher critical threshold for a global outbreak compared to equivalent random networks. These findings can provide valuable insights into the nuanced role of network topology in shaping information propagation, highlighting that CP structure can both facilitate and hinder diffusion depending on contagion type. Full article
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16 pages, 610 KB  
Article
Characterization of Carbapenem-Resistant Gram-Negative Bacilli Isolates in Multispecialty Private Hospitals in Lagos, Nigeria
by Moruf Salau, Uraiwan Kositanont, Pirom Noisumdaeng, Folasade Ogunsola, Abdul-Wahab Omo-ope Ettu, Damilola Adewojo, Chinonso Ojimma, Omamode Ojomaikre and Kanjana Changkaew
Infect. Dis. Rep. 2025, 17(5), 119; https://doi.org/10.3390/idr17050119 - 21 Sep 2025
Viewed by 168
Abstract
Background/Objectives: Carbapenem-resistant Gram-negative bacilli (CR-GNB) pose a growing challenge to public health worldwide due to limited treatment options. This cross-sectional study investigated the characteristics of CR-GNB isolated from clinical specimens in Lagos, Nigeria. Methods: Gram-negative bacilli (GNB) and clinical data were obtained from [...] Read more.
Background/Objectives: Carbapenem-resistant Gram-negative bacilli (CR-GNB) pose a growing challenge to public health worldwide due to limited treatment options. This cross-sectional study investigated the characteristics of CR-GNB isolated from clinical specimens in Lagos, Nigeria. Methods: Gram-negative bacilli (GNB) and clinical data were obtained from three multi-specialist private hospitals between March and June 2023. The GNB were identified using the Analytical Profile Index (API) and investigated for CR-GNB by disk diffusion. Antimicrobial resistance patterns and carbapenemase gene data for presumptive carbapenemase-producing Gram-negative bacilli (CP-GNB) were analyzed using Vitek-2 and polymerase chain reaction (PCR). Results: Of 317 GNB, 29.0% (n = 92) were CR-GNB. Significantly higher numbers of CR-GNB were reported from the intensive care unit and oncology department (p = 0.009). Of all CR-GNB, 17 isolates (18.5%) were classified as presumptive CP-GNB. In this subgroup, resistance rates of ampicillin/sulbactam (100.0%) and trimethoprim/sulfamethoxazole (100.0%) were highest. Ten (10) CP-GNB were confirmed, representing 3.15% of all GNB tested. Seven isolates of New Delhi Metallo-β-lactamase (blaNDM) were found among P. aeruginosa, K. pneumoniae, E. coli, and A. baumannii. The blaNDM was identified in strains classified as extensively drug-resistant (XDR) and pandrug-resistant. Conversely, the blaKPC was detected solely in multidrug-resistant and XDR strains. Conclusions: Emerging CR-GNB, specifically CP-GNB, in Nigeria emphasize the need for specific therapeutic management of infected patients. Antimicrobial stewardship and long-term surveillance efforts must be implemented in healthcare settings, as well as improved, accelerated microorganism identification techniques. Full article
(This article belongs to the Section Antimicrobial Stewardship and Resistance)
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20 pages, 2713 KB  
Article
Molecular Structure, Comparative Analysis, and Phylogenetic Insights into the Complete Chloroplast Genomes of Fissidens crispulus
by Yun-Qi Song, Kai-Li Kang, Jin Chen, Yu-Mei Wei, You-Liang Xiang and Tao Peng
Genes 2025, 16(9), 1103; https://doi.org/10.3390/genes16091103 - 18 Sep 2025
Viewed by 289
Abstract
Background/Objectives: Fissidens crispulus Brid. is a dioicous moss with conspicuous axillary hyaline nodules and serrulate leaf margins. It features Neoamblyothallia-type peristome teeth and serves as an ecologically significant model for studying adaptation in the hyperdiverse genus Fissidens (>440 species). Methods: In this [...] Read more.
Background/Objectives: Fissidens crispulus Brid. is a dioicous moss with conspicuous axillary hyaline nodules and serrulate leaf margins. It features Neoamblyothallia-type peristome teeth and serves as an ecologically significant model for studying adaptation in the hyperdiverse genus Fissidens (>440 species). Methods: In this study, the complete chloroplast genome of F. crispulus was sequenced and de novo assembled, enabling detailed comparative genomic, phylogenetic, and codon usage bias studies. Results: As the third fully sequenced member of Fissidentaceae, this study deciphers its 124,264–124,440 bp quadripartite genome encoding 129 genes (83 CDS, 32 tRNAs, 8 rRNAs). Repeat analysis identified 125–127 SSRs, dominated by mono-/di-nucleotide A/T repeats (>70%), and dispersed repeats predominantly forward (F) and palindromic (P) (>85%), confirming profound AT-biased composition (GC content: 28.7%). We established 7 hypervariable loci (matK, ycf2, etc.) as novel Dicranidae-wide phylogenetic markers. Codon usage exhibited significant A/U-ending preference, with 12 optimal codons (e.g., GCA, UGU, UUU) determined. Maximum likelihood analyses resolved F. crispulus and F. protonematicola as sister groups with high support value (MBP = 100%). Conclusions: This work provides the foundational cpDNA resource for Fissidens, filling a major gap in bryophyte chloroplast genomics and establishing a framework for resolving the genus’s infrageneric conflicts. Furthermore, it offers critical insights into bryophyte plastome evolution and enables future codon-optimized biotechnological applications. Full article
(This article belongs to the Special Issue Molecular Adaptation and Evolutionary Genetics in Plants)
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17 pages, 1884 KB  
Article
Enamel Surface and Elemental Changes Following In Vitro Bleaching: A SEM-EDS Approach
by Berivan Laura Rebeca Buzatu, Ramona Dumitrescu, Magda Mihaela Luca, Roxana Buzatu, Atena Galuscan, Vanessa Bolchis, Gabriela Vlase, Titus Vlase and Daniela Elisabeta Jumanca
Dent. J. 2025, 13(9), 431; https://doi.org/10.3390/dj13090431 - 17 Sep 2025
Viewed by 265
Abstract
Background and Objectives: Chairside bleaching can alter enamel morphology and mineral content. This in vitro study compared surface changes and elemental shifts after three in-office protocols using scanning electron microscopy (SEM) and energy-dispersive X-ray spectroscopy (EDS). Materials and Methods: Forty-two human premolars/molars were [...] Read more.
Background and Objectives: Chairside bleaching can alter enamel morphology and mineral content. This in vitro study compared surface changes and elemental shifts after three in-office protocols using scanning electron microscopy (SEM) and energy-dispersive X-ray spectroscopy (EDS). Materials and Methods: Forty-two human premolars/molars were sectioned; matched halves served as control or received Opalescence Quick 45% carbamide peroxide (CP), Opalescence Boost 40% hydrogen peroxide (HP), or BlancOne Ultra+ 35% HP with light activation. Gels were applied per manufacturers’ instructions. SEM assessed topography (×500–×1100); EDS quantified atomic percent of O, Ca, P, C and trace elements. One-way ANOVA compared Ca and P between bleached groups (α = 0.05). Results: Controls showed compact surfaces with preserved Ca and P. After Quick, SEM revealed roughness, fissures and microcracks; Ca fell from 11.5 to 12.5 to 9.53–11.73 at% and P from 7.5 to 8.9 to 7.41–8.59 at%. Boost produced mild superficial restructuring and granular deposits with variable Ca 13.80–27.94 at% and P 7.32–14.65 at%. BlancOne Ultra+ caused diffuse erosion and loss of prismatic clarity with marked demineralization (Ca 1.42–7.85 at%, P 1.22–6.71 at%); C rose locally to 46.61 at%. Across bleached groups, Ca and P differed significantly (both p < 0.001). Oxygen remained dominant (~39–50 at%) in all spectra; occasional Al/Si/Cl/K likely reflected residues or preparation artifacts. Conclusions: All protocols produced surface and compositional alterations, with a severity gradient: BlancOne Ultra+ > Boost > Quick. High-concentration, light-activated HP yielded the largest Ca/P losses. Clinically, neutral-pH, non-activated or chemically activated regimens and immediate post-bleach remineralization should ideally be used when feasible, particularly before adhesive procedures. Full article
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27 pages, 12818 KB  
Article
Interplay Between Genetic Diversity and Tree Vitality in Fraxinus excelsior Populations Affected by Ash Dieback
by Justyna Nowakowska, Jakub Słowik, Artur Pacia, Anna Tereba, Aleh Marozau, Piotr Borowik and Tomasz Oszako
Genes 2025, 16(9), 1087; https://doi.org/10.3390/genes16091087 - 16 Sep 2025
Viewed by 368
Abstract
Background: Ash dieback, driven by the invasive fungal pathogen Hymenoscyphus fraxineus, has precipitated severe declines in Fraxinus excelsior L. populations across Europe, threatening genetic diversity and ecosystem stability. Methods: This study investigates the interplay between phenotypic vitality and genetic variation in five [...] Read more.
Background: Ash dieback, driven by the invasive fungal pathogen Hymenoscyphus fraxineus, has precipitated severe declines in Fraxinus excelsior L. populations across Europe, threatening genetic diversity and ecosystem stability. Methods: This study investigates the interplay between phenotypic vitality and genetic variation in five Polish ash stands using nuclear simple sequence repeat (nSSR) and chloroplast DNA (cpDNA) markers. Vitality assessments of 186 trees across three reserves (from Białowieża Primeval Forest and Wolica Reserve) were conducted. Results: Vitality assessments revealed a slight predominance of dying individuals (36%, 3rd degree of Roloff classification). Nuclear analyses indicated moderate to high diversity (mean HE = 0.826), significant inbreeding (FIS = 0.178, p < 0.001), and low inter-population differentiation (FST = 0.044) among all five stands. Chloroplast markers showed elevated differentiation (ΦST = 0.228, p < 0.0001), reflecting phylogeographic structure. Vitality degrees assessed in three chosen populations (Browsk FD, Hajnówka FD, and Chojnów FD) exhibited negligible genetic differentiation (nSSR FST = 0.009; cpDNA ΦST = 0.003), suggesting gene flow mitigates pathogen-induced selection. Bayesian clustering (STRUCTURE, K = 3) revealed admixture with distinct genotypes in dying trees, potentially linked to susceptibility. Conclusions: These findings underscore the resilience of ash genetic pools and advocate for selective breeding in nurseries to prevent the spread of dieback, prioritizing resistant genotypes for conservation. Full article
(This article belongs to the Section Plant Genetics and Genomics)
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33 pages, 40641 KB  
Article
Modified Liuwei Dihuang Decoction Ameliorates Oligoasthenozoospermia in Mice via Modulation of the PI3K/AKT/Nrf2 Signaling Pathway
by Mingzhu Li, Linhuang Chen, Haotian Xu, Junlin Li, Yatian Liu, Xiuyun Chen, Minyi Luo, Xinyuan Xie, Mingyu Yin and Jinyang He
Pharmaceuticals 2025, 18(9), 1363; https://doi.org/10.3390/ph18091363 - 12 Sep 2025
Viewed by 355
Abstract
Background: Oligoasthenozoospermia (OA) is a common cause of male infertility. Modified Liuwei Dihuang Decoction (MLWDH) is an improved version of Liuwei Dihuang Decoction (LWDH), a traditional Chinese medicine prescription, which has demonstrated significant therapeutic effects against OA. This study aims to evaluate [...] Read more.
Background: Oligoasthenozoospermia (OA) is a common cause of male infertility. Modified Liuwei Dihuang Decoction (MLWDH) is an improved version of Liuwei Dihuang Decoction (LWDH), a traditional Chinese medicine prescription, which has demonstrated significant therapeutic effects against OA. This study aims to evaluate the protective effects of MLWDH against OA and elucidate its underlying molecular mechanisms. Methods: The constituents of MLWDH were identified via UPLC-HRMS and compound databases (TCMSP, HERB). Network pharmacology analysis was conducted to predict potential therapeutic targets and associated signaling pathways. In vivo, a CP-induced mouse model of OA was established to evaluate the therapeutic efficacy of MWDH by assessing testicular and epididymal indices, sperm quality, histopathological changes and serum hormone levels. Oxidative stress markers, including MDA, SOD, GSH and NO, were measured using commercial assay kits. The underlying molecular mechanisms, particularly those related to oxidative stress and inflammation (PI3K, Akt, Nrf2, Keap1, HO-1, NQO1, NF-κB, TNF-α, IL-6), were further elucidated by RT-qPCR, Western blot, and immunofluorescence. Results: A total of 345 major bioactive compounds were identified in MLWDH. Network pharmacology and molecular docking analyses indicated that MLWDH exerts its effects primarily through the PI3K/AKT signaling pathway. MLWDH administration in vivo significantly improved sperm count, motility, and morphology, while also increasing serum levels of testosterone, FSH, and LH. Moreover, MLWDH significantly mitigated oxidative damage, as evidenced by decreased MDA concentrations and elevated levels of GSH, NO and SOD. Mechanistic investigations further substantiated that MLWDH enhanced PI3K/AKT/Nrf2 signaling while inhibiting NF-κB signaling in OA mice. Conclusions: Our findings suggest that MLWDH ameliorates OA in a preclinical mouse model by improving sperm quality and testicular function, potentially via activation of the PI3K/AKT/Nrf2 signaling pathway and the inhibition of NF-κB signaling, thereby alleviating oxidative stress and inflammatory responses. Full article
(This article belongs to the Section Pharmacology)
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28 pages, 4004 KB  
Article
Influencing Factors and Adaptation Strategies of Stoichiometric Characteristics of Main Shrubs and Herbs in Karst Area at Microhabitat Scale
by Peng Wu, Hua Zhou, Wenjun Zhao, Guangneng Yang, Yingchun Cui, Yiju Hou, Chengjiang Tan, Ting Zhou, Run Liu and Fangjun Ding
Plants 2025, 14(18), 2839; https://doi.org/10.3390/plants14182839 - 11 Sep 2025
Viewed by 281
Abstract
In order to reveal the adaptation strategies of karst forest plants to “high-calcium (Ca)–low-phosphorus (P) heterogeneous” habitats, the dominant shrubs and herbs in the Maolan karst area were taken as the research objects. The carbon (C), nitrogen (N), P, potassium (K), Ca, and [...] Read more.
In order to reveal the adaptation strategies of karst forest plants to “high-calcium (Ca)–low-phosphorus (P) heterogeneous” habitats, the dominant shrubs and herbs in the Maolan karst area were taken as the research objects. The carbon (C), nitrogen (N), P, potassium (K), Ca, and magnesium (Mg) contents of plant components and their stoichiometric ratios in different microhabitats were systematically measured, and the environmental driving factors were analyzed by redundancy analysis (RDA) and variance partitioning analysis (VPA). The results showed that there were no significant differences in the plant nutrient contents and stoichiometric ratios in different microhabitats, but there were significant differences with respect to the components. The contents of N, P, K, and Mg in shrub leaves were significantly higher than those in branches and roots, while the contents of C/N, C/P, and C/K in branches and roots were significantly higher than those in leaves. The K content of herb leaves was significantly higher than that of roots. This reflects the functional differentiation of plant components and the different trade-off strategies for resource acquisition and storage. The stoichiometric characteristics of shrub leaves are dominated by species characteristics, while herb leaves are controlled by leaf tissue density (LTD), and soil-exchangeable Ca has a significant regulatory effect on the roots of both plant forms. Shrubs directly obtain bedrock slow-release nutrients through deep roots penetrating rock crevices and combine high C/N and C/P to improve nutrient utilization efficiency, forming a “mechanical resistance priority–metabolic cost optimization” adaptation strategy. Herbs respond to environmental fluctuations through functional trait plasticity and achieve rapid growth with high specific leaf area (SLA) and low LTD. Full article
(This article belongs to the Special Issue Advances in Plant Nutrition Responses and Stress)
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23 pages, 5821 KB  
Article
Physiological and Transcriptional Regulation of Salt Tolerance in Thinopyrum ponticum and Screening of Salt-Tolerant Candidate Genes
by Ran Zhang, Rui Zhong, Kuiju Niu, Fang Jia, Yuehan Liu and Xiaoxia Li
Plants 2025, 14(17), 2771; https://doi.org/10.3390/plants14172771 - 4 Sep 2025
Viewed by 520
Abstract
The tall wheatgrass Thinopyrum ponticum has excellent saline–alkali tolerance and great potential for restoring saline–alkali land to enhance productivity. This study used the Thinopyrum ponticum cv. “Orbit” variety, which is widely planted in saline–alkali pastures, as the material and artificially simulated salt stress [...] Read more.
The tall wheatgrass Thinopyrum ponticum has excellent saline–alkali tolerance and great potential for restoring saline–alkali land to enhance productivity. This study used the Thinopyrum ponticum cv. “Orbit” variety, which is widely planted in saline–alkali pastures, as the material and artificially simulated salt stress using 150 mM NaCl and 150 mM Na2SO4, respectively. The growth and physiological indexes of the leaves and roots of seedlings were measured after various treatment durations, and the transcriptomes of untreated and Na2SO4-treated leaves and roots were also analyzed after 24 h of treatment. The results showed that salt stress resulted in significant reductions in leaf relative water content in seedlings and inhibited root elongation growth, with Na2SO4 treatment producing a greater impact on plant growth than NaCl treatment. Salt stress significantly alters ion transport and distribution in Thinopyrum ponticum, characterized by pronounced Na+ accumulation and a concomitant decline in K+ uptake. Additionally, to adapt to salt stress, roots enhance their ability to absorb and transport essential cations, such as Ca2+, Mg2+, Fe3+, and Cu2+. RNA-Seq analysis identified 1682 and 2816 differentially expressed genes (DEGs) in leaves and roots under Na2SO4 stress, respectively, with 210 common DEGs. Enrichment analyses revealed that DEGs were primarily associated with redox homeostasis, ion balance, and signal transduction. Furthermore, transcription regulation analysis indicated the Thinopyrum ponticum can coordinate the activation of NAC/MYB/WRKY transcription factors, SA/ETH hormone signaling, and Ca2+ pathways in response to salt stress. In summary, this study systematically reveals for the first time the molecular mechanisms by which Thinopyrum ponticum responds to Na2SO4 stress through coordinated regulation of ion transport, transcription factor networks, and hormone-Ca2+ signaling pathways. Based on transcriptomic and protein–protein interaction analyses, nine key candidate genes for saline–alkali tolerance were identified, including UGT7472, JMT, T4E14.7, CAX5, CP1, PXG2 NAMT1, BON3, and APX7. These findings provide novel genetic resources and a theoretical foundation for breeding salt–alkali-tolerant crops. Full article
(This article belongs to the Special Issue Abiotic Stress Responses in Plants—Second Edition)
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Systematic Review
An Epigenomic Meta-Analysis of Differentially Methylated Sites in Pre- and Post-Metabolic/Bariatric Surgery Adult Female Patients
by Agnieszka Lovett, Graham A. Hitman, Georgios K. Dimitriadis, Alice M. Murphy, Gyanendra Tripathi and Aparna Duggirala
Epigenomes 2025, 9(3), 32; https://doi.org/10.3390/epigenomes9030032 - 29 Aug 2025
Viewed by 495
Abstract
Background/Objectives: Metabolic/bariatric surgery is currently the most successful treatment for patients with obesity; however, a fifth of patients undergoing surgery may not lose enough weight to be considered successful. Recent studies have shown that bariatric/metabolic surgery alters the epigenome and may explain postoperative [...] Read more.
Background/Objectives: Metabolic/bariatric surgery is currently the most successful treatment for patients with obesity; however, a fifth of patients undergoing surgery may not lose enough weight to be considered successful. Recent studies have shown that bariatric/metabolic surgery alters the epigenome and may explain postoperative improvements in metabolic health. The primary objective is to consolidate published differentially methylated CpG sites in pre- and post-metabolic/bariatric surgery female patients and associate them with the respective genes and pathways. Methods: This systematic review adhered to the PRISMA-P guidelines and was registered with the PROSPERO (CRD42023421852). Following an initial screening of 541 studies using COVIDENCE, six studies were selected, comprising three epigenome-wide association studies (EWAS) and three candidate gene methylation studies. The published studies collected DNA samples from female patients with obesity before and after surgery (3 months, 6 months, 9–31 months, and 2 years). KEGG pathway analysis was performed on genes where the extracted CpG sites were located. Results: The meta-analysis showed that 11,456 CpG sites are differentially methylated after a successful weight loss surgery, with 109 sites mapped to genes involved in key metabolic pathways, including FoxO, mTOR, insulin, cAMP, adipocytokine, Toll-like receptor, and PI3K-Akt. Conclusion: The highlighted differentially methylated CpG sites can be further used to predict the molecular signature associated with successful metabolic/bariatric surgery. Full article
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18 pages, 310 KB  
Review
Agnostic Biomarkers and Molecular Signatures in Colorectal Cancer—Guiding Chemotherapy and Predicting Response
by Ilektra Kyrochristou, Georgios D. Lianos, Gerasimia D. Kyrochristou, Georgios Anagnostopoulos, Christina Bali, Stergios Boussios, Michail Mitsis, Dimitrios Schizas and Konstantinos Vlachos
Biomedicines 2025, 13(8), 2038; https://doi.org/10.3390/biomedicines13082038 - 21 Aug 2025
Viewed by 607
Abstract
The concept of agnostic biomarkers—molecular modifications that guide therapy irrespective of tumor origin—has gained increasing relevance in oncology, including colorectal cancer (CRC). This review aims to critically evaluate the role of such biomarkers in CRC, highlighting their clinical significance as therapeutic targets and [...] Read more.
The concept of agnostic biomarkers—molecular modifications that guide therapy irrespective of tumor origin—has gained increasing relevance in oncology, including colorectal cancer (CRC). This review aims to critically evaluate the role of such biomarkers in CRC, highlighting their clinical significance as therapeutic targets and indicators of prognosis. Through a PubMed search using the terms “agnostic treatment AND colorectal cancer,” eight key studies were identified and qualitatively analyzed. We focus on several biomarkers commonly regarded as agnostic across tumor types, including BRAF V600E mutation, receptor tyrosine kinase (RTK) and PI3K fusions, the CpG island methylator phenotype (CIMP), high tumor mutational burden (TMB), and microsatellite instability (MSI). These markers are inspected for their prevalence in CRC, underlying pathophysiological mechanisms of cancer promotion, and predictive or prognostic implications. Moreover, we integrate findings from broader oncologic studies to contextualize the evolving role of agnostic biomarkers beyond organ-specific paradigms. Emerging evidence suggests that leveraging these molecular signatures may inform the use of targeted and immunotherapeutic agents as first-line options in select CRC populations. Collectively, agnostic biomarkers represent an auspicious avenue for personalizing CRC treatment, particularly in advanced-stage disease where traditional treatment options remain limited. Full article
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