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Search Results (382)

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Keywords = Fluorescence Resonance Energy Transfer (FRET)

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23 pages, 56779 KB  
Review
Advances in Photoluminescence and Quenching Mechanism of Carbon Dots
by Qingyun Xiong, Hafiz M. Ahsen Ilyas, Weiyu Cao and Jinping Xiong
Nanomaterials 2026, 16(11), 686; https://doi.org/10.3390/nano16110686 - 1 Jun 2026
Viewed by 153
Abstract
Carbon dots (CDs) are zero-dimensional carbon nanomaterials with sizes below 10 nm, with high fluorescence quantum yields, variable emission colours, and excellent photostability. Due to their different structural origins and complex surface chemicals, CDs display complex photoluminescence behaviors (PL) and different fluorescence suppression [...] Read more.
Carbon dots (CDs) are zero-dimensional carbon nanomaterials with sizes below 10 nm, with high fluorescence quantum yields, variable emission colours, and excellent photostability. Due to their different structural origins and complex surface chemicals, CDs display complex photoluminescence behaviors (PL) and different fluorescence suppression responses. This review systematically summarizes recent advances in understanding the PL mechanisms of CDs, including carbon-core emission, surface emission, molecular emission and crosslink emission. In addition, fluorescence quenching processes triggered by various analytical techniques are discussed, including dynamic quenching, static quenching, Förster resonance energy transfer (FRET), photoinduced electron transfer (PET), and the inner filter effect (IFE). Emphasis is placed on mechanistic understanding and experimental differentiation strategies. A clear understanding of these fundamental mechanisms is essential for optimizing the fluorescence properties of CDs and the design of highly sensitive and selective fluorescence sensors. Finally, potential research directions and applications of CDs based on these mechanical insights are also highlighted. Full article
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20 pages, 9905 KB  
Article
Preparation and Photophysical Study of Rhodamine–Perylenebisimide Electron Donor–Acceptor Dyad/Triads Containing Flexible Linkers
by Xin Guan, Haotian Bai, Jianzhang Zhao and Yan Wan
Molecules 2026, 31(11), 1859; https://doi.org/10.3390/molecules31111859 - 28 May 2026
Viewed by 198
Abstract
We report the synthesis and characterization of the photophysical characterization of a series of rhodamine (Rho)–perylenebisimide (PBI) electron donor–acceptor dyad/triads containing flexible alkyl spacers (ethylene or hexylene chains). Steady-state absorption and emission, femtosecond and nanosecond transient absorption (fs-TA and ns-TA), cyclic voltammetry, triplet–triplet [...] Read more.
We report the synthesis and characterization of the photophysical characterization of a series of rhodamine (Rho)–perylenebisimide (PBI) electron donor–acceptor dyad/triads containing flexible alkyl spacers (ethylene or hexylene chains). Steady-state absorption and emission, femtosecond and nanosecond transient absorption (fs-TA and ns-TA), cyclic voltammetry, triplet–triplet energy transfer (TTET) experiments and DFT/TD-DFT calculations were combined to elucidate the excited-state dynamics. fs-TA spectral study indicates fast decay of the S1 state and formation of the 3PBI state (0.32–663 ps), which is supported by the ns-TA spectra. The localized PBI triplet (3PBI*) exhibits unusually long lifetimes (up to 272 μs) as determined by the TTET experiment. No long-lived charge-separated (CS) state was observed. While a Förster resonance energy transfer (FRET) probably occurs between PBI and the open-ring rhodamine, a photo-induced electron transfer is proposed to be responsible for the quenching of the fluorescence of the PBI moiety. Full article
(This article belongs to the Special Issue Photochemistry in Asia—Second Edition)
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47 pages, 4544 KB  
Review
Fluorescence-Based Neurotransmitter Detection: Nanomaterial Engineering and Bioanalytical Advances at the Nano–Neuro Interface
by Pazhani Durgadevi, Koyeli Girigoswami, Chandni Thakkar and Agnishwar Girigoswami
Photochem 2026, 6(2), 14; https://doi.org/10.3390/photochem6020014 - 25 Mar 2026
Viewed by 959
Abstract
All forms of neural communications, from cognition to emotion, are regulated by neurotransmitters, which are otherwise the chemical language of the brain. Precise detection of these neurotransmitters is essential for the perception of neurophysiology and diagnosis of neurodegenerative diseases as well. Among the [...] Read more.
All forms of neural communications, from cognition to emotion, are regulated by neurotransmitters, which are otherwise the chemical language of the brain. Precise detection of these neurotransmitters is essential for the perception of neurophysiology and diagnosis of neurodegenerative diseases as well. Among the existing techniques for the detection of these molecules, fluorescence sensing is evolving as a powerful approach in terms of high sensitivity, rapid response, and real-time visualization of the chemical events occurring in the neural system. In recent years, nanomaterials have transformed this field by integrating tunable optical properties, excellent photostability, and modifiable surface chemistry into biocompatible nanostructures. We summarize the recent advances of these architectures to show how the material type and dimensionality, as well as the surface functionality, play roles in sensing through the mechanisms of Förster resonance energy transfer (FRET), photoinduced electron transfer (PET), inner filter effect (IFE), and aggregation-induced emission (AIE). The discussion has also been extended to the correlation of fluorescence modulation with the selectivity and sensitivity in the mechanism-to-function relationship. The potential utility of such innovative technologies, including artificial intelligence, spectral deconvolution analysis via big data algorithms, and chip-integrated sensing, was explored as a means to enable real-time neurochemical detection. This converging area of nanotechnology and neuroscience leaves a mark not just in analytical accuracy, but also parallels human brain rhythms. Full article
(This article belongs to the Special Issue Photochemistry Directed Applications of Organic Fluorescent Materials)
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18 pages, 2570 KB  
Review
Application and Research Progress of Rare Earth Element Labeling Technology in Immunoassay Detection
by Haoran Li, Wencan Jiang and Guojun Zhang
Targets 2026, 4(1), 11; https://doi.org/10.3390/targets4010011 - 23 Mar 2026
Viewed by 659
Abstract
Rare earth elements (REEs), located in the IIIB group of the periodic table, can be detected in very small quantities by sensitive detection techniques. REE labeling technologies utilize fluorescent labeling, magnetic labeling, atomic fluorescence labeling, fluorescence resonance energy transfer (FRET) labeling and radiolabeling. [...] Read more.
Rare earth elements (REEs), located in the IIIB group of the periodic table, can be detected in very small quantities by sensitive detection techniques. REE labeling technologies utilize fluorescent labeling, magnetic labeling, atomic fluorescence labeling, fluorescence resonance energy transfer (FRET) labeling and radiolabeling. Widely used immunoassays related to REE-labeled technologies include time-resolved fluorescence immunofluorescence assay (TRFIA), inductively coupled plasma–mass spectrometry (ICP–MS)-based immunoassays, mass spectrometry flow-through (CyTOF), and upconversion nanoparticles (UCNPs). REE-labeled immunoassays have been widely used in various fields, such as biological analysis, biomarker detection and analysis of food detection techniques, as these assays can use low quantities of biological tissue, exhibit stability, can label materials, lack radioactivity and show multidetection capability. To provide researchers with a deeper understanding of the immunoassay technique used to label rare earth elements, this paper reviews its labeling principle, detection technology, and application. Full article
(This article belongs to the Special Issue Molecular Spectroscopy-Based Targeted Detection)
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22 pages, 2624 KB  
Review
From Population Averaging to Single Event Resolution: Evolution of Sensing Platforms for Membrane Fusion
by Yazhuo Feng, Xuanzhu Zhao, Zhangbao Sun, Zhangrong Lou and Sheng Zhang
Sensors 2026, 26(5), 1669; https://doi.org/10.3390/s26051669 - 6 Mar 2026
Viewed by 572
Abstract
Membrane fusion is fundamental to intracellular transport and signal transduction, with its dysregulation implicated in various diseases. Deciphering its transient, microscale dynamics requires advanced sensing technologies. This review systematically evaluates optical and electrochemical sensing platforms for in vitro studies of membrane fusion. Optical [...] Read more.
Membrane fusion is fundamental to intracellular transport and signal transduction, with its dysregulation implicated in various diseases. Deciphering its transient, microscale dynamics requires advanced sensing technologies. This review systematically evaluates optical and electrochemical sensing platforms for in vitro studies of membrane fusion. Optical sensing platforms provide greater intuitive readout of membrane fusion events, whereas electrochemical sensing platforms enable label-free, single-event resolution. We revisit classical fluorescence resonance energy transfer (FRET) strategies for lipid and content mixing, tracing their evolution from ensemble measurements to real-time, multiparameter, single-vesicle analysis. We further examine electrochemical platforms based on nanodisc-black lipid membranes (ND-BLMs) and solid-supported lipid bilayers (SLBs), highlighting their unique capabilities in characterizing fusion pore kinetics and virus–host membrane fusion. ND-BLM-based systems are irreplaceable for probing fusion pore kinetics, owing to their sub-millisecond temporal resolution and being essentially free from ion saturation and depletion effects. Meanwhile, SLB-based electrochemical sensing platforms excel at high-throughput detection of viral membrane fusion events by virtue of their excellent compatibility and facile integration. These sensors provide powerful tools for elucidating the molecular mechanisms underlying SNARE-mediated membrane fusion and viral fusion processes. Finally, this review outlines future directions centered on the integration of multimodal sensing and the construction of physiomimetic membranes, emphasizing the critical role of cross-scale, multiparameter sensing in bridging molecular mechanisms with biological functions and advancing the diagnosis and treatment of membrane fusion-related diseases. Full article
(This article belongs to the Section Optical Sensors)
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18 pages, 2478 KB  
Article
Rapid Detection of Fumonisin B1 Using a Fluorescent Aptasensor with Plasmon-Modified Graphene Oxide as a Quencher
by Yi Jiao, Xiaoqing Yang, Junping Hao, Yuhang Wen, Shanshan Wang, Jingbo Zhang, Hengchao E, Zhiyong Zhao, Jianhua Wang and Xianli Yang
Biosensors 2026, 16(2), 133; https://doi.org/10.3390/bios16020133 - 22 Feb 2026
Viewed by 1199
Abstract
Fumonisin B1 (FB1) is a secondary metabolite produced by Fusarium species, exhibiting strong toxicity and classified as a Group 2B carcinogen by the International Agency for Research on Cancer. It poses a significant threat to both human and animal health. Therefore, developing a [...] Read more.
Fumonisin B1 (FB1) is a secondary metabolite produced by Fusarium species, exhibiting strong toxicity and classified as a Group 2B carcinogen by the International Agency for Research on Cancer. It poses a significant threat to both human and animal health. Therefore, developing a simple and reliable method for FB1 detection and analysis is imperative. In this study, a biosensor based on nucleic acid aptamers was developed, utilizing plasma-modified graphene oxide (mGO) as a fluorescence quencher for FB1 detection. This system leverages the interaction between mGO and FAM-APT (a nucleic acid aptamer labeled with 5-carboxyfluorescein, FAM), achieving fluorescence quenching through fluorescence resonance energy transfer (FRET) under excitation at 490 nm and emission at 520 nm. In the presence of FB1, FAM-APT specifically binds to FB1 and dissociates from the mGO surface, resulting in fluorescence recovery. Quantitative detection of FB1 was achieved by measuring the differential fluorescence intensity. The biosensor demonstrated excellent linearity over a concentration range of 10 to 5 × 106 ng/L, with a detection limit (LOD) as low as 0.16 μg/L. Additionally, the sensor exhibited high specificity for FB1 among six common mycotoxins. In practical sample analysis, recovery rates ranged from 95.8% to 104.7% in corn samples and from 89.3% to 94.5% in rice samples. This aptamer-based biosensor features a simple structure, high sensitivity, and a wide detection range, providing important technical support for advancing mycotoxin research. Full article
(This article belongs to the Special Issue Advanced Biosensors Based on Molecular Recognition)
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22 pages, 11480 KB  
Article
VOCs Profiling and Quality Assessment of Milk Employing Odorant-Binding Proteins-Based Fluorescence Biosensor
by Cristina Giannattasio, Rosaria Cozzolino, Sabato D’Auria and Angela Pennacchio
Int. J. Mol. Sci. 2026, 27(3), 1333; https://doi.org/10.3390/ijms27031333 - 29 Jan 2026
Cited by 1 | Viewed by 458
Abstract
The quality of cow’s milk is critical for human nutrition; thus, it is important to develop rapid, sensitive, and cost-effective methods to monitor milk quality. Volatile Organic Compounds (VOCs) from milk are odorant molecules that can be used as key indicators of milk [...] Read more.
The quality of cow’s milk is critical for human nutrition; thus, it is important to develop rapid, sensitive, and cost-effective methods to monitor milk quality. Volatile Organic Compounds (VOCs) from milk are odorant molecules that can be used as key indicators of milk quality, since their presence is influenced by important factors such as animal metabolism, animal diet, and farming practices. In this work, we used the porcine odorant-binding protein (pOBP) and the bovine odorant-binding protein (bOBP) as molecular recognition elements (MREs) of an innovative fluorescence biosensor to detect the presence of odorant molecules in (a) milk produced by intensive livestock farming and (b) milk produced by extensive livestock farming. For biosensors, it is important to use proteins that are stable under operative conditions; therefore, we used fluorescence spectroscopy for a biophysical characterization of the pOBP and of the bOBP at different temperatures. The proposed biosensor employs a system to capture the odorant molecules from milk, which are then transferred to a liquid phase for quantitative and qualitative analyses. The binding of the odorant molecules to the OBPs triggers a Förster Resonance Energy Transfer (FRET) signal, allowing for real-time VOC quantification. The performance of the assays was evaluated by Headspace Solid-Phase Microextraction coupled with Gas Chromatography–Mass Spectrometry (HS-SPME/GC-MS) experiments. The experimental approach used for the development of the biosensor demonstrated high sensitivity and specificity, enabling the differentiation of milk from intensive and extensive farming systems. The results indicate the potential of this method for the real-time monitoring of VOCs in milk samples for food traceability and quality control. Full article
(This article belongs to the Section Bioactives and Nutraceuticals)
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17 pages, 2714 KB  
Article
Design and Application of Fluorescence Probes for Gold Nanocage Complex Perovskite Quantum Dots
by Ying Liu, Yinglian Wu, Hongliang Zhang, Ruiqi Bao, Jingjing Wang and Wei Chen
Nanomaterials 2026, 16(3), 168; https://doi.org/10.3390/nano16030168 - 26 Jan 2026
Cited by 1 | Viewed by 653
Abstract
In this study, a gold nanocage composite perovskite quantum dot fluorescent probe (MB-GNCs-PQDs) was designed and constructed. The GNCs-PQDs composite system was formed by the combination of gold nanocages (GNCs) and perovskite quantum dots (PQDs). Spectral analysis confirmed that its fluorescence intensity was [...] Read more.
In this study, a gold nanocage composite perovskite quantum dot fluorescent probe (MB-GNCs-PQDs) was designed and constructed. The GNCs-PQDs composite system was formed by the combination of gold nanocages (GNCs) and perovskite quantum dots (PQDs). Spectral analysis confirmed that its fluorescence intensity was significantly enhanced by 15.38% compared with that of pure PQDs. Furthermore, amino modification was performed on the nanomaterial. Through the specific design of molecular beacons (MB), the fluorescence emission spectrum of the probe was matched with the absorption peak of the quencher group BHQ2, and the effective closure of the fluorescence signal was achieved based on the Fluorescence Resonance Energy Transfer (FRET) effect. Subsequently, MB was immobilized on the surface of the composite system via amino covalent conjugation to complete the probe preparation. The prepared probe was applied to the detection of miRNA-4529-3P and miR-301b-3p, which are tumor markers of non-small cell lung cancer (NSCLC). The hybridization of target molecules with MB could trigger the disruption of FRET and the recovery of fluorescence signal, exhibiting excellent recognition performance. This study provides an experimental basis for the preparation of composite fluorescent probes, and the developed probe has potential application value in the field of tumor marker detection. Full article
(This article belongs to the Topic Advanced Materials in Chemical Engineering)
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12 pages, 3112 KB  
Article
CdSe/ZnS QDs and O170 Dye-Decorated Spider Silk for pH Sensing
by Yangjie Tang, Hao Zhang, Ran Xiao, Qixuan Wu, Jie Zhang, Chenchen Liu, Peng Yu, Guowei Yang and Hongxiang Lei
Coatings 2026, 16(1), 110; https://doi.org/10.3390/coatings16010110 - 14 Jan 2026
Viewed by 472
Abstract
Effective in situ pH sensing holds exciting prospects in environmental and biomedical applications, but still faces a great challenge. Until now, pH sensors with small size, high sensitivity, good stability and repeatability, great biosafety, wide detection range, and flexible structure have rarely been [...] Read more.
Effective in situ pH sensing holds exciting prospects in environmental and biomedical applications, but still faces a great challenge. Until now, pH sensors with small size, high sensitivity, good stability and repeatability, great biosafety, wide detection range, and flexible structure have rarely been reported. Herein, we propose a novel dual-emission ratiometric fluorescent pH sensor by decorating ethyl cellulose (EC)-encapsulated CdSe/ZnS quantum dots (QDs) and oxazine 170 perchlorate (O170 dye) on the surface of the spider silk. When a 473 nm excitation light is coupled into the pH sensor, the evanescent wave transmitting along the surface of the spider silk will excite the CdSe/ZnS QDs and then the O170 dye based on the fluorescence resonance energy transfer (FRET) effect from the QDs; thus, the pH sensing of the surrounding liquid environment can be achieved in real time by collecting the photoluminescence (PL) spectra of the pH sensor and measuring the emission intensity ratio of the two fluorescent materials. The sensor has also demonstrated a high sensing sensitivity (0.775/pH unit) within a wide pH range of 1.92–12.11, as well as excellent reusability and reversibility, structure and time stability, biocompatibility, and biosafety. The proposed pH sensor has a potential application in an in situ monitor of water microenvironments, cellular metabolism, tumor microenvironments, etc. Full article
(This article belongs to the Special Issue Advances in Nanostructured Thin Films and Coatings, 3rd Edition)
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12 pages, 1474 KB  
Article
Distinct Fecal Proteolytic Activity in Zoo Animals with Different Feeding Strategies
by Luka Otte, Arryn Baltus, Floris J. Bikker, Anouk Fens, Kamran Nazmi, Heleen van Engeldorp Gastelaars, Henk S. Brand and Wendy E. Kaman
Animals 2025, 15(24), 3559; https://doi.org/10.3390/ani15243559 - 11 Dec 2025
Viewed by 700
Abstract
Impaired intestinal proteolytic activity can lead to increased intestinal permeability. Differences in dietary protein intake may influence proteolytic activity in the digestive system. This study investigated whether intestinal proteolytic activity can be influenced by diet. Fecal samples from representative species of each different [...] Read more.
Impaired intestinal proteolytic activity can lead to increased intestinal permeability. Differences in dietary protein intake may influence proteolytic activity in the digestive system. This study investigated whether intestinal proteolytic activity can be influenced by diet. Fecal samples from representative species of each different dietary group—carnivore, herbivore, and omnivore—were analyzed using fluorescence resonance energy transfer (FRET) peptide substrates to measure enzyme activity. Specific protease inhibitors were applied to identify the enzyme classes responsible for substrate degradation. Results showed that total proteolytic activity was significantly higher in feces from carnivores and omnivores than in those of herbivores. The addition of a serine protease inhibitor substantially reduced substrate degradation, indicating that serine proteases accounted for most of the observed activity. These findings demonstrate that proteolytic activity in feces is closely related to dietary protein intake and suggest that the regulation of proteases in the digestive tract may be influenced by feeding behavior and nutritional requirements. Full article
(This article belongs to the Section Animal Nutrition)
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19 pages, 2412 KB  
Article
Cytocompatible FRET Assembly of CdTe@GSH Quantum Dots and Au@BSA Nanoclusters: A Novel Ratiometric Strategy for Dopamine Detection
by Arturo Iván Pavón-Hernández, Doris Ramírez-Herrera, Eustolia Rodríguez-Velázquez, Manuel Alatorre-Meda, Miguel Ramos-Heredia, Antonio Tirado-Guízar and Georgina Pina-Luis
Molecules 2025, 30(21), 4169; https://doi.org/10.3390/molecules30214169 - 23 Oct 2025
Viewed by 1114
Abstract
This study presents a novel ratiometric fluorescent sensor based on Förster resonance energy transfer (FRET) between glutathione (GSH)-coated CdTe quantum dots (CdTe/GSH QDs) and bovine serum albumin (BSA)-coated Au nanoclusters (AuNCs/BSA) for dopamine (DA) detection. The nanoparticles were characterized using transmission electron microscopy [...] Read more.
This study presents a novel ratiometric fluorescent sensor based on Förster resonance energy transfer (FRET) between glutathione (GSH)-coated CdTe quantum dots (CdTe/GSH QDs) and bovine serum albumin (BSA)-coated Au nanoclusters (AuNCs/BSA) for dopamine (DA) detection. The nanoparticles were characterized using transmission electron microscopy (TEM), zeta potential measurements, Fourier transform infrared (FTIR) spectroscopy, UV-Vis absorption and fluorescence spectroscopy. Key FRET parameters, including energy transfer efficiency (E), donor–acceptor distance (r), Förster distance (R0), and the overlap integral (J), were determined. The interactions between the CdTe/GSH-AuNCs/BSA conjugate and DA were investigated, revealing a dual mechanism of QDs fluorescence quenching that involves both energy and electron transfer. The average lifetime values and spectral profiles of CdTe/GSH QDs, both in the absence and presence of DA, suggest a dynamic fluorescence quenching process. The variation in the ratiometric signal with increasing DA concentration demonstrated a linear response within the range of 0–250 µM, with a correlation coefficient of 0.9963 and a detection limit of 6.9 nM. This proposed nanosensor exhibited selectivity against potential interfering substances, including urea, glucose, BSA, GSH, citric acid, and metal ions such as Na+ and Ca2+. The conjugate also demonstrates excellent cytocompatibility and enhances cell proliferation in HeLa epithelial cells, making it suitable for biological applications. It was successfully employed for DA detection in urine samples, achieving recoveries ranging from 99.1% to 104.2%. The sensor is highly sensitive, selective, rapid, and cost-effective, representing a promising alternative for DA detection across various sample types. Full article
(This article belongs to the Special Issue Metallic Nanoclusters and Their Interaction with Light)
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38 pages, 2958 KB  
Review
Multiplexed Optical Nanobiosensing Technologies for Disease Biomarker Detection
by Pureum Kim, Min Yu Choi, Yubeen Lee, Ki-Bum Lee and Jin-Ha Choi
Biosensors 2025, 15(10), 682; https://doi.org/10.3390/bios15100682 - 9 Oct 2025
Cited by 11 | Viewed by 3104
Abstract
Most biomarkers exhibit abnormal expression in more than one disease, making conventional single-biomarker detection strategies prone to false-negative results. Detecting multiple biomarkers associated with a single disease can therefore substantially improve diagnostic accuracy. Accordingly, recent research has focused on precise multiplex detection, leading [...] Read more.
Most biomarkers exhibit abnormal expression in more than one disease, making conventional single-biomarker detection strategies prone to false-negative results. Detecting multiple biomarkers associated with a single disease can therefore substantially improve diagnostic accuracy. Accordingly, recent research has focused on precise multiplex detection, leading to the development of sensors employing various readout methods, including electrochemical, fluorescence, Raman, and colorimetric approaches. This review focuses on optical sensing applications, such as fluorescence, Raman spectroscopy, and colorimetry, which offer rapid and straightforward detection and are well suited for point-of-care testing (POCT). These optical sensors exploit nanoscale phenomena derived from the intrinsic properties of nanomaterials, including metal-enhanced fluorescence (MEF), Förster resonance energy transfer (FRET), and surface-enhanced Raman scattering (SERS), which can be tailored through modifications in material type and structure. We summarize the types and properties of commonly used nanomaterials, including plasmonic and carbon-based nanoparticles, and provide a comprehensive overview of recent advances in multiplex biomarker detection. Furthermore, we address the potential of these nanosensors for clinical translation and POCT applications, highlighting their relevance for next-generation disease diagnostic platforms. Full article
(This article belongs to the Special Issue Nanomaterial-Based Biosensors for Point-of-Care Testing)
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9 pages, 741 KB  
Brief Report
Dual-Emission FRET-PCR Outperforms SYBR Green and EvaGreen for Accurate Discrimination of Primary Canine Dermatophytes: Microsporum canis, Nannizzia gypsea, and Trichophyton mentagrophytes
by Nneka Vivian Iduu, Rae Kantzler, Donna Raiford, Brenda Bixler, Kelly Chenoweth and Chengming Wang
J. Fungi 2025, 11(10), 708; https://doi.org/10.3390/jof11100708 - 30 Sep 2025
Viewed by 1303
Abstract
Conventional diagnosis of dermatophytosis relies on fungal culture and microscopic examination, methods that are often time-consuming and lack sensitivity. This study aimed to develop and compare real-time PCR assays for the simultaneous detection and differentiation of three major dermatophytes in dogs: Microsporum canis [...] Read more.
Conventional diagnosis of dermatophytosis relies on fungal culture and microscopic examination, methods that are often time-consuming and lack sensitivity. This study aimed to develop and compare real-time PCR assays for the simultaneous detection and differentiation of three major dermatophytes in dogs: Microsporum canis, Nannizzia gypsea, and Trichophyton mentagrophytes. Three qPCR platforms targeting the chitin synthase 1 (CHS1) gene—SYBR Green, EvaGreen, and dual-emission fluorescence resonance energy transfer (FRET)—were evaluated. The FRET assay demonstrated the highest performance, achieving a detection limit of a single gene copy per reaction and producing distinct melting profiles that enabled accurate species discrimination (M. canis ~56.1 °C, N. gypsea ~53.0 °C, T. mentagrophytes ~51.8 °C). In contrast, SYBR Green and EvaGreen assays showed reduced sensitivity and cross-reactivity with non-target fungi. All assays were validated using three ATCC reference strains, ten clinical isolates of the target dermatophytes, and nine additional fungal species, including Nocardia, Aspergillus, Fusarium, Sporothrix, and Candida. Overall, FRET-qPCR exhibited a 100% specificity and a detection limit of one copy of target gene per reaction, offering a rapid, reliable tool for accurate diagnosis and molecular surveillance of dermatophytosis in companion animals. Full article
(This article belongs to the Special Issue Dermatophytes and Cutaneous Fungal Infections)
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13 pages, 2392 KB  
Article
An Improved Ratiometric FRET Biosensor with Higher Affinity for Extracellular ATP
by Autumn Cholger, Jason M. Conley, Elaine Colomb, Olivia de Cuba, Jacob Kress and Mathew Tantama
Sensors 2025, 25(18), 5903; https://doi.org/10.3390/s25185903 - 21 Sep 2025
Viewed by 1368
Abstract
Adenosine triphosphate (ATP) is readily released into the extracellular space as an autocrine and paracrine purinergic signaling molecule. We originally reported a genetically encoded, fluorescent protein-based Förster Resonance Energy Transfer (FRET) biosensor that can detect micromolar levels of extracellular ATP. Through mutagenesis of [...] Read more.
Adenosine triphosphate (ATP) is readily released into the extracellular space as an autocrine and paracrine purinergic signaling molecule. We originally reported a genetically encoded, fluorescent protein-based Förster Resonance Energy Transfer (FRET) biosensor that can detect micromolar levels of extracellular ATP. Through mutagenesis of the ATP binding site and optimization of cell-surface display, here we report the development of a second-generation biosensor called ECATS2 with greater than three-fold higher affinity for extracellular ATP. We found that the tether length between the FRET biosensor and the cell surface anchor is critical to optimization of its performance. Furthermore, we demonstrate that the improved sensor can detect extracellular ATP release upon hypoosmotic stress in cultured astrocytes. This new sensor contributes an improved tool for the ratiometric detection of extracellular ATP dynamics and purinergic signaling. Full article
(This article belongs to the Section Biosensors)
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25 pages, 13991 KB  
Review
Progress and Prospects in FRET for the Investigation of Protein–Protein Interactions
by Yue Zhang, Xinyue Ma, Meihua Zhu, Vivien Ya-Fan Wang and Jiajia Guo
Biosensors 2025, 15(9), 624; https://doi.org/10.3390/bios15090624 - 19 Sep 2025
Cited by 5 | Viewed by 4433
Abstract
Protein–protein interactions (PPIs) play a crucial role in various biological processes, including signal transduction, transcriptional regulation, and metabolic pathways. Over the years, many methods have been developed to study PPIs, such as yeast two-hybrid (Y2H), co-immunoprecipitation (Co-IP), pull-down assays, and surface plasmon resonance [...] Read more.
Protein–protein interactions (PPIs) play a crucial role in various biological processes, including signal transduction, transcriptional regulation, and metabolic pathways. Over the years, many methods have been developed to study PPIs, such as yeast two-hybrid (Y2H), co-immunoprecipitation (Co-IP), pull-down assays, and surface plasmon resonance (SPR). However, each of these techniques has its own limitations, including false positives, a lack of specific binding partners, and restricted interaction zones. Fluorescence resonance energy transfer (FRET) has emerged as a powerful technique for investigating PPIs, offering several advantages over traditional methods. Recent advancements in fluorescence microscopy have further enhanced its application in PPI studies. In this review, we summarize recent developments in FRET-based approaches and their applications in PPIs research over the past five years, including conventional FRET, time-resolved FRET (TR-FRET), fluorescence lifetime imaging microscopy-FRET (FLIM-FRET), single-molecule FRET (smFRET), fluorescence cross-correlation spectroscopy FRET (FCCS-FRET), and provide guidance on selecting the most appropriate method for PPIs studies. Full article
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