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14 pages, 1583 KB  
Article
Comprehensive Genomic Profiling of Cutaneous Adnexal Carcinomas: A Genomic Landscape Study
by Maroun Bou Zerdan, Kevin T. Jamouss, Alexandre Maalouf, Rita Moukarzel, Tanishq Chhabra, Daniel J. Zaccarini, Dean Pavlick, Natalie Danziger and Jeffrey Ross
Dermatopathology 2026, 13(2), 15; https://doi.org/10.3390/dermatopathology13020015 - 30 Mar 2026
Viewed by 263
Abstract
Cutaneous adnexal carcinomas (CACs) comprise a diverse group of malignant tumors that show morphological differentiation toward one of the four main adnexal structures in normal skin: hair follicles, sebaceous glands, sweat-apocrine glands, and sweat-eccrine glands. These tumors can arise sporadically or may be [...] Read more.
Cutaneous adnexal carcinomas (CACs) comprise a diverse group of malignant tumors that show morphological differentiation toward one of the four main adnexal structures in normal skin: hair follicles, sebaceous glands, sweat-apocrine glands, and sweat-eccrine glands. These tumors can arise sporadically or may be associated with rare genetic syndromes. A total of 276 CACs cases underwent hybrid capture-based comprehensive genomic profiling (CGP) to assess all classes of genomic alterations (GA). Sequencing data were used to determine microsatellite instability (MSI) status, tumor mutational burden (TMB), genomic loss of heterozygosity (gLOH), genomic ancestry, and COSMIC mutational signatures. PD-L1 expression was evaluated by immunohistochemistry (TPS; Dako 22C3). Statistical analyses were performed using Fisher’s exact test, with false discovery rate correction via the Benjamini–Hochberg method. Sequencing was performed on primary cutaneous tumors in 131 cases (47.4%) and on local recurrence or metastatic site biopsies in 145 cases (52.5%). Across all groups, there was a male predominance (64–81%) and similar mean ages (59–63 years), with apocrine (APO) tumors occurring in older patients than eccrine (ECC) tumors (72 vs. 62 years; p = 0.001). Histologically, 173 tumors (62.7%) were sweat gland-derived (SWT), 55 (19.9%) sebaceous gland-derived (SEB), 14 (5.1%) hair follicle-derived (HRF), and 34 (12.3%) unclassified (UNK). Among SWT tumors, 150 (86.7%) were eccrine and 23 (13.3%) apocrine. SWT tumors included digital papillary adenocarcinomas (DPA, 6.9%), mucinous carcinomas (MC, 6.3%), porocarcinomas (POR, 11.0%), spiradenocarcinomas (SPR, 8.1%), syringoadenocarcinomas (SRNG, 5.8%), and 77 (44.5%) unclassified cases. The number of GA per tumor was highest in SEB compared with SWT tumors (7.9 vs. 4.9; p = 0.005) and lowest in DPA (2.1 vs. 5.0 in non-DPA; p = 0.03). No differences in ancestry distribution were observed. Compared with SWT tumors, SEB tumors exhibited higher frequencies of RB1 (38.2% vs. 8.1%; p < 0.0001) and TP53 alterations (76.4% vs. 43.4%; p = 0.0002), suggesting potential neuroendocrine differentiation. MC tumors showed significantly higher PTCH1 alterations than non-MC tumors (36.4% vs. 1.8%; p = 0.044). MSI-high status was most frequent in SEB tumors compared with all other groups (15.7% vs. 1.2%; p = 0.005), and gLOH > 16% was also more common in SEB than SWT tumors (19.6% vs. 7.2%; p = 0.081). The MMR signature occurred more frequently in SEB than SWT tumors (32.0% vs. 2.1%; p = 0.005). Mean TMB was elevated across most CACs types, ranging from 10.4 mutations/Mb in HRF to 38.8 mutations/Mb in MC, with the exceptions of APO (2.7 mut/Mb; p = 0.001) and DPA (1.4 mut/Mb; p = 0.003). PD-L1 expression was generally low and did not differ significantly between SWT and SEB tumors (37.0% vs. 33.3%; NS). Given the limited data on CAC treatment, this study provides a catalog of commonly observed GA. SEB tumors exhibited the highest frequency of genomic alterations. Prospective clinical trials are needed to determine the prognostic and predictive value of CAC-specific biomarkers for immune checkpoint inhibitor (ICI) response, which is essential for integrating novel therapies into the evolving treatment landscape. Full article
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17 pages, 752 KB  
Review
Mechanical Circulatory Support on Coronary Artery Bypass Grafting for Advanced Ischemic Cardiomyopathy: State of the Art
by Erik J. Orozco-Hernandez, James E. Davies, Sasha Anne Still, Kyle W. Eudailey, Venkateswaran Rajamiyer, Panos N. Vardas, Clifton T. Lewis and William Holman
Medicina 2026, 62(4), 638; https://doi.org/10.3390/medicina62040638 - 27 Mar 2026
Viewed by 277
Abstract
Ischemic cardiomyopathy is defined as coronary artery disease accompanied by left ventricular dysfunction with an ejection fraction equal to or less than 40%. The substrate of ischemic cardiomyopathy is heterogeneous, characterized by the coexistence of normal, stunned, hibernating, and scarred myocardium within the [...] Read more.
Ischemic cardiomyopathy is defined as coronary artery disease accompanied by left ventricular dysfunction with an ejection fraction equal to or less than 40%. The substrate of ischemic cardiomyopathy is heterogeneous, characterized by the coexistence of normal, stunned, hibernating, and scarred myocardium within the same myocardial region. Altogether, these components may represent different phases of a single pathological process. It is well-established that the assessment of isolated myocardial viability and ischemia alone has failed to reliably guide the indication for coronary artery bypass grafting (CABG). CABG in patients with low ejection fraction carries a significant risk of perioperative mortality and morbidity, largely related to the development of postcardiotomy shock. Preoperative optimization with pharmacologic or mechanical circulatory support (MCS) is often essential; the decision requires integrating multiple complex factors, including clinical presentation, response to optimization therapy, myocardial viability, the presence of hibernating or scarred myocardium, left ventricular end-systolic volume index, coronary angiography findings, hemodynamic assessment, and the Pulmonary Arterial Pressure Index score. A preoperative evaluation that incorporates anatomical, morphological, functional, and hemodynamic domains enables more precise selection and timing of MCS. Preemptive left ventricular unloading mitigates the physiological impact of cardiopulmonary bypass, preserves end-organ perfusion, and reduces the need for high-dose vasopressors. However, the risk–benefit ratio remains uncertain and may be associated with serious complications. Careful judgment regarding the indications for MCS has the potential to enhance the safety of CABG in high-risk patients, but robust, long-term, prospective studies are needed to determine its true impact on clinical outcomes. In this review, we will examine the indications and criteria for the use of MCS in patients with advanced ischemic cardiomyopathy, as well as the various devices available for preoperative or intraoperative support, including technical considerations, advantages and disadvantages, and associated complications. Full article
(This article belongs to the Special Issue New Insights into Coronary Artery Bypass)
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24 pages, 3128 KB  
Article
Comparative Transcriptomic Analysis of Two Apple Cultivars in Response to Dual Cytokinin Applied In Vitro
by Viktor Ambrus, Dóra Farkas, Anita Király, Bianka Tóth, Neama Abdalla and Judit Dobránszki
Plants 2026, 15(7), 1001; https://doi.org/10.3390/plants15071001 - 25 Mar 2026
Viewed by 532
Abstract
The application of dual cytokinins can significantly enhance shoot multiplication rates in specific apple cultivars compared to standard protocols using a single cytokinin. This study presents a comprehensive analysis of shoot multiplication parameters and the underlying transcriptomic response of two distinct apple scion [...] Read more.
The application of dual cytokinins can significantly enhance shoot multiplication rates in specific apple cultivars compared to standard protocols using a single cytokinin. This study presents a comprehensive analysis of shoot multiplication parameters and the underlying transcriptomic response of two distinct apple scion cultivars, cvs. Húsvéti rozmaring and McIntosh, to the simultaneous application of two cytokinins (BA and KIN). Morphological parameters were recorded, followed by comparative RNA-seq analysis and RT-qPCR validation. Our results demonstrate that the BA+KIN treatment induces a unique transcriptomic signature in both cultivars, which cannot be explained by a simple dose–response effect. In cv. McIntosh, 76% of the DEGs were uniquely regulated by the combination, while in cv. Húsvéti rozmaring, although the overlap with single treatments was higher, 17% of the DEGs (representing 1218 genes) were still exclusively activated by the BA+KIN treatment. The fact that the combined treatment recruits specific gene sets and metabolic pathways that remain silent under single BA or KIN applications—regardless of the cultivar—strongly supports a synergistic or non-additive hormonal interaction rather than a response to increased total cytokinin concentration. The dual treatment revealed 3209 DEGs in the inter-cultivar comparison, reflecting distinct strategies: cv. Húsvéti rozmaring achieved high efficiency growth by down-regulating internal hormones, whereas cv. McIntosh exploited intense auxin signaling and hormonal plasticity to maximize bud release. These results prove that distinct molecular pathways can lead to peak performance depending on the apple cultivar. Full article
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18 pages, 8085 KB  
Article
Investigation of Microstructural Characterization and Tensile Deformation Mechanisms in Inconel 617 Welded Joints Produced by GTAW
by Mingyang Zhao, Lang Wang, Wenhao Ren, Yuxin Wang, Tao Zhang and Zhengzong Chen
Materials 2026, 19(6), 1251; https://doi.org/10.3390/ma19061251 - 21 Mar 2026
Viewed by 296
Abstract
The microstructural evolution and tensile behavior of Inconel 617 welded joints produced by gas tungsten arc welding (GTAW) with ERNiCrCoMo-1 filler were systematically investigated. Detailed microstructural characterization revealed that Cr-rich M23C6 and Ti-rich MC carbides are the dominant precipitates, while [...] Read more.
The microstructural evolution and tensile behavior of Inconel 617 welded joints produced by gas tungsten arc welding (GTAW) with ERNiCrCoMo-1 filler were systematically investigated. Detailed microstructural characterization revealed that Cr-rich M23C6 and Ti-rich MC carbides are the dominant precipitates, while Mo-rich M6C forms locally along grain boundaries after thermal exposure. The fusion and weld zones exhibit fine dendritic morphologies with uniformly distributed precipitates, resulting in significant strengthening through precipitation and dislocation–pinning mechanisms. Owing to the low heat input and compositional compatibility between the weld and base metals, the heat-affected zone remains extremely narrow and free of compositional transitions. The welded joint attains tensile strengths of 920 MPa at room temperature and 605.5 MPa at 750 °C, corresponding to joint efficiencies of 117% and 121%, respectively, with fracture consistently occurring in the base metal. Deformation analysis shows that plasticity at room temperature is governed by planar slip and dislocation entanglement, whereas deformation twinning predominates at elevated temperatures owing to the reduced stacking-fault energy and the pinning effect of M23C6 carbides. These results provide key insights into the deformation and strengthening mechanisms controlling the high-temperature performance of GTAW-welded Inconel 617 joints and offer guidance for their application in advanced nuclear and high-temperature energy systems. Full article
(This article belongs to the Section Metals and Alloys)
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21 pages, 6186 KB  
Article
Genotype-Encoded UV Sensitivity in iPSC-Derived Human Melanocytes Reveals MX2 as a Physiological Amplifier of p53/p38-Mediated DNA Damage Signaling
by Eric Ramirez-Salazar, Ana Slipicevic, Marina Juraleviciute, Ling Li, Mark Harland, Sally O’Shea, Sinead Field, Julia Newton-Bishop and Meenhard Herlyn
Int. J. Mol. Sci. 2026, 27(6), 2617; https://doi.org/10.3390/ijms27062617 - 12 Mar 2026
Viewed by 407
Abstract
Ultraviolet (UV) radiation induces DNA damage and oxidative stress in melanocytes, shaping pigmentation phenotypes and elevating photocarcinogenesis risk. Human models that capture donor-linked genetic determinants of UV sensitivity remain limited. Here, we establish a genotype-informed UV response model using induced pluripotent stem cell [...] Read more.
Ultraviolet (UV) radiation induces DNA damage and oxidative stress in melanocytes, shaping pigmentation phenotypes and elevating photocarcinogenesis risk. Human models that capture donor-linked genetic determinants of UV sensitivity remain limited. Here, we establish a genotype-informed UV response model using induced pluripotent stem cell (iPSC)-derived melanocytes from donors carrying defined MC1R variants. Differentiated cells recapitulated melanocytic morphology, marker expression, and pigmentation consistent with donor sun-sensitivity traits. Following narrowband UVB exposure, melanocyte lines with higher UV sensitivity showed reduced survival, prolonged checkpoint activation, and CPD-associated DNA damage signaling dynamics. Mechanistic analysis suggests that the interferon-regulated GTPase MX2 is associated with amplification of UV-induced p53 and p38 activation while promoting apoptosis independently of AKT. These findings support MX2 as a physiological enhancer of DNA damage signaling in normal melanocytes, distinct from its interferon-mediated role in melanoma. Our study provides a human-relevant platform linking pigmentation genotype to UV resilience and supports iPSC-derived systems as new approach methodologies (NAMs) for mechanistic and translational phototoxicology. Full article
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25 pages, 2650 KB  
Article
Urban Structural Imbalance Under Rapid Expansion: Evidence from Service Accessibility and Housing Prices
by Wenxuan Zhang and Jianguo Wang
Land 2026, 15(3), 446; https://doi.org/10.3390/land15030446 - 11 Mar 2026
Viewed by 335
Abstract
This research examines the structural evolution and functional performance of urban spatial expansion in Changchun, Northeast China. Utilizing an integrated framework of the Adjusted Sprawl Index, Gaussian two-step floating catchment area (Gaussian 2SFCA) accessibility modeling, and XGBoost-SHAP machine learning, the study identifies a [...] Read more.
This research examines the structural evolution and functional performance of urban spatial expansion in Changchun, Northeast China. Utilizing an integrated framework of the Adjusted Sprawl Index, Gaussian two-step floating catchment area (Gaussian 2SFCA) accessibility modeling, and XGBoost-SHAP machine learning, the study identifies a decoupled growth pattern where land development and infrastructure construction proceed without a corresponding increase in population density, reflecting a structural-demographic divergence. Empirical results demonstrate that land expansion reached a significant peak between 2015 and 2020, followed by a transition toward morphological equalization and stabilization after 2020. This process manifests as asynchronous urbanism, where the strategic deployment of physical infrastructure frameworks systematically precedes the functional integration of essential social services. The analysis reveals the emergence of localized service-value misalignment clusters in peripheral zones. The phenomenon represents a deviation from the traditional monocentric paradigm toward McCann’s framework of modern urban economics, as high residential valuations are sustained by social capital and institutional expectations despite physical service gaps. Within these clusters, the club realm and private enclosure function as critical forward-looking mechanisms, where the presence of influential groups signals future social and infrastructural investment. A negative interaction effect between property management levels and regional accessibility confirms that these private governance structures effectively substitute for maturing public resources. These findings suggest that future development should prioritize the functional integration of social systems over mere material expansion. Full article
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23 pages, 4638 KB  
Article
Development of an Efficient In Vitro Propagation Method for Acmella oleracea (L.) R.K. Jansen
by Pál Szarvas, Judit Csabai, Anzhela Kolesnyk and Judit Dobránszki
Methods Protoc. 2026, 9(2), 44; https://doi.org/10.3390/mps9020044 - 8 Mar 2026
Viewed by 297
Abstract
Acmella oleracea (L.) R.K. Jansen is an herbaceous plant cultivated globally as an annual ornamental species. While conventional propagation methods exist, the lack of a standardized in vitro protocol limits research and industrial applications that require genetically and morphologically uniform plant material. In [...] Read more.
Acmella oleracea (L.) R.K. Jansen is an herbaceous plant cultivated globally as an annual ornamental species. While conventional propagation methods exist, the lack of a standardized in vitro protocol limits research and industrial applications that require genetically and morphologically uniform plant material. In this study, in vitro cultures of A. oleracea were established via seed germination. Well-developed in vitro shoots were dissected into individual nodal segments to serve as explants. Multiple media were evaluated for regeneration and growth, including full-, half, and quarter-strength Murashige and Skoog (MS) media, as well as full- and half-strength McCown Woody Plant media. Two carbohydrate sources, saccharose and glucose, were tested at concentrations of 1%, 2%, and 3% (w/v) in the multiplication medium. Subsequently, the effects of different cytokinins were assessed at concentrations of 4.4 µM and 13.2 µM. The findings demonstrated that 13.2 µM meta-Topolin with 3% saccharose, or 13.2 µM Benzyladenine with 2% glucose was most beneficial for shoot multiplication of A. oleracea. The multiplied shoots were rooted in vitro within 13 days, then potted and acclimatized within 8 days. This protocol facilitates future industrial applications of A. oleracea, particularly in the cosmetics sector, where the use of standardized biomass is essential. Full article
(This article belongs to the Section Biomedical Sciences and Physiology)
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17 pages, 78428 KB  
Article
Assessment of Homologous Recombination System Gene Expression in Chemologically Induced Carcinogenesis In Vivo Models
by Matvey M. Tsyganov, Danna Zh. Bulatova, Anastasia A. Fedorenko, Dmitry M. Loos, Pavel E. Nikiforov, Irina A. Tsydenova, Aigerim A. Bayanbayeva, Zhansaya Sharipkhanova, Sofia S. Timoshenko and Marina K. Ibragimova
Curr. Issues Mol. Biol. 2026, 48(3), 275; https://doi.org/10.3390/cimb48030275 - 4 Mar 2026
Viewed by 393
Abstract
Understanding the molecular mechanisms of carcinogenesis, including disruptions in the homologous recombination system, is fundamental to understanding malignant transformation. Dysfunction of homologous recombination genes, such as BRCA1 and BRCA2, contributes to genomic instability and the development of more aggressive tumor clones. The [...] Read more.
Understanding the molecular mechanisms of carcinogenesis, including disruptions in the homologous recombination system, is fundamental to understanding malignant transformation. Dysfunction of homologous recombination genes, such as BRCA1 and BRCA2, contributes to genomic instability and the development of more aggressive tumor clones. The use of chemical carcinogens enables the modeling of tumor formation and the monitoring of changes in molecular genetic parameters. This approach is important for understanding how tumor cells adapt to genotoxic stress and for advancing the development of personalized cancer therapies. The objective of this study was to evaluate the expression of key homologous recombination system genes in a model of chemically induced carcinogenesis in mice. Materials and Methods: Male outbred ICR (CD-1) laboratory mice (n = 40) were used to study chemically induced carcinogenesis. The animals were divided into four groups: two control groups and two experimental groups, which received 3-methylcholanthrene (MC) or trichloroacetic acid (TCA). Tumor cells were identified by histological analysis of autopsy material using light microscopy after standard hematoxylin and eosin staining. RNA and DNA were extracted from cell suspensions using the RNeasy Plus Mini Kit and QIAamp DNA Mini Kit (Qiagen, Hilden, Germany), respectively. The expression levels of homologous recombination genes were assessed by RT-PCR and microarray analysis. Digital PCR was performed to assess chromosomal aberrations in the Brca1 gene. Results: Tumor formations were identified in laboratory animals two months after 3-methylcholanthrene. Histological analysis revealed morphological changes in a pleomorphic cell tumor, forming diverse, multidirectional fascicular and swirling structures, as well as large solid foci composed of markedly polymorphic spindle-shaped and epithelioid cells. Analysis of copy number aberrations in the examined samples showed that the frequency of Brca1 deletions was 60%, while 40% of animals had normal gene copy number. To further characterize the molecular changes, we assessed gene expression levels through expression microarray analysis. A total of 14 genes were hypoexpressed in the tumor compared to the normal tissue, with p < 0.05. A high level of differential expression was characteristic for Rad50, Rad51, Brca1, Brca2, and Pold4. Two genes, Rad52 and Bard1, exhibited increased expression levels. It was shown that as the tumor mass increased, so did the frequency of homologous recombination genes with hypoexpression. Conclusions: Our findings confirm that MC and TCA influence tumor formation and reveal that suppression of homologous recombination genes may contribute to this process. In addition, it has been established that as tumors progress, the expression of DNA repair genes declines and aberrant gene states accumulate. These data emphasize the importance of studying the state of DNA repair genes for the development of more effective strategies for cancer diagnosis and therapy. Full article
(This article belongs to the Special Issue Linking Genomic Changes with Cancer in the NGS Era, 3rd Edition)
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21 pages, 4471 KB  
Article
MCS-YOLO: A Mamba-Enhanced Coordinate and Spatial YOLO Network for Lightweight Weed Detection
by Qi Yan, Ning Jin, Si Li, Huaji Zhu and Huarui Wu
Agriculture 2026, 16(5), 539; https://doi.org/10.3390/agriculture16050539 - 27 Feb 2026
Viewed by 351
Abstract
Precision weeding is crucial for maximizing crop yields and minimizing herbicide use. However, deploying standard deep learning models in agriculture faces challenges due to the high morphological diversity of weeds and the computational constraints of edge devices. Hence, this study proposes MCS-YOLO, a [...] Read more.
Precision weeding is crucial for maximizing crop yields and minimizing herbicide use. However, deploying standard deep learning models in agriculture faces challenges due to the high morphological diversity of weeds and the computational constraints of edge devices. Hence, this study proposes MCS-YOLO, a lightweight detection model based on the YOLOv8 architecture. First, a channel-level Mamba module is integrated into the backbone to model long-range feature dependencies and enhance global texture representation. The LMAB module employs parallel depthwise separable convolutions with varying receptive fields and coordinate attention to improve multi-scale weed discrimination. To mitigate feature blurring and misalignment during upsampling, the LCAU module adopts dynamic offset sampling beyond fixed interpolation methods. Finally, the SCS-Head integrates dual-branch depthwise separable convolution with channel shuffling to reduce parameter redundancy while preserving efficient feature expression. Experimental results on the Weed-Crop dataset demonstrate that MCS-YOLO achieves 76.4% mAP@50 and 38.3% mAP@50–95, outperforming YOLOv8s by 3.1% and 1.5%, respectively. Furthermore, the parameter count is reduced by 20.7%, from 11.13 M to 8.83 M, and GFLOPs are reduced by 39.6%, from 28.5 to 17.2. These results confirm that MCS-YOLO effectively balances a lightweight design with high detection accuracy, offering a viable solution for real-time weed detection and automated weeding on embedded agricultural platforms. Full article
(This article belongs to the Section Crop Protection, Diseases, Pests and Weeds)
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16 pages, 3433 KB  
Article
Molecular Biodiversity and De Novo Transcriptomic Analysis of Boletus griseipurpureus: Investigating Associated Genes During Symbiosis with Specific Hosts
by Alisa Nakkaew and Kotchakorn Praopring
Microbiol. Res. 2026, 17(3), 47; https://doi.org/10.3390/microbiolres17030047 - 25 Feb 2026
Viewed by 304
Abstract
Boletus griseipurpureus is an ectomycorrhizal mushroom characterized by a bitter flavor. In this study, specimens were collected from three host plants—Acacia auriculiformis (BgAa), Melaleuca cajuputi (BgMc), and Eucalyptus camaldulensis (BgEc)—and initially classified based on pileus morphology. Molecular biodiversity was investigated using internal [...] Read more.
Boletus griseipurpureus is an ectomycorrhizal mushroom characterized by a bitter flavor. In this study, specimens were collected from three host plants—Acacia auriculiformis (BgAa), Melaleuca cajuputi (BgMc), and Eucalyptus camaldulensis (BgEc)—and initially classified based on pileus morphology. Molecular biodiversity was investigated using internal transcribed spacer (ITS) DNA barcoding, and comprehensive phylogenetic analysis revealed that B. griseipurpureus populations in southern Thailand clustered according to their symbiotic host species. De novo transcriptome assembly of B. griseipurpureus associated with different hosts was performed to generate unigene datasets, followed by functional gene annotation. A total of 1157 differentially expressed genes (DEGs) were identified and linked to ectomycorrhizal symbiosis. The genes involved in biosynthesis and metabolic processes exhibited host-dependent expression patterns. Furthermore, expression profiles of five selected genes—major facilitator superfamily (MFS) substrate transporter, phosphatase II, hexose transporter, terpenoid synthase, and fungal hydrophobin—were consistent between DEG analysis and semi-quantitative RT-PCR validation. These findings suggest that these genes play important roles in ectomycorrhizal symbiosis and the biosynthesis of bioactive compounds in B. griseipurpureus, with expression influenced by host association. This study provides valuable insights into the molecular biodiversity and gene regulation underlying ectomycorrhizal symbiosis, contributing to a better understanding of the biological processes in B. griseipurpureus. Full article
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13 pages, 1185 KB  
Article
A Dual-Mode Near-Infrared Optical Probe and Monte Carlo Framework for Functional Monitoring of Rheumatoid Arthritis: Addressing Diagnostic Ambiguity and Skin Tone Robustness
by Parmveer Atwal, Ryley McWilliams, Ramani Ramaseshen and Farid Golnaraghi
Sensors 2026, 26(4), 1179; https://doi.org/10.3390/s26041179 - 11 Feb 2026
Viewed by 464
Abstract
Current diagnostic modalities for rheumatoid arthritis (RA), such as Magnetic Resonance Imaging (MRI) and ultrasound (US), excel at visualizing structural pathology but are either resource-intensive or often limited to morphological assessment. In this work, we present the design and technical validation of a [...] Read more.
Current diagnostic modalities for rheumatoid arthritis (RA), such as Magnetic Resonance Imaging (MRI) and ultrasound (US), excel at visualizing structural pathology but are either resource-intensive or often limited to morphological assessment. In this work, we present the design and technical validation of a low-cost continuous-wave near-infrared (NIR) dual-mode optical probe for functional monitoring of joint inflammation. Unlike superficial imaging, NIR light penetrates approximately 3–5 cm and is tissue and wavelength dependent, enabling trans-illumination of the synovial volume. The system combines reflectance and transmission geometries to resolve the ambiguity between disease presence and disease severity. To validate the diagnostic logic, we employed mcxyzn Monte Carlo (MC) simulations to model the optical signature of RA progression from early onset to EULAR-OMERACT grade 2 pannus hypertrophy on a simplified finger model, based on several tissue models in the literature and supported by physical measurements on a multilayer silicone phantom and in vivo signal verification on human volunteers. Our results demonstrate a distinct functional dichotomy: reflectance geometry serves as a binary discriminator of synovial turbidity onset, while transmission flux serves as a monotonic proxy for pannus volume, exhibiting a quantifiable signal decay consistent with the Beer–Lambert law. Signal verification on a subject with confirmed RA pathology demonstrated a significant increase in the effective attenuation coefficient (µeff ~ 0.59 mm−1) compared to the healthy baseline (µeff ~ 0.47  mm−1). Furthermore, simulation analysis revealed a critical “metric inversion” in darker skin phenotypes (Fitzpatrick V–VI), where the standard beam-broadening signature of inflammation is artificially suppressed by epidermal absorption. We conclude that while transmission flux remains a robust grading metric across diverse skin tones, morphological beam-shape metrics are not robust, particularly in high-absorption populations. By targeting the hemodynamic precursors of structural damage, this dual-mode probe design offers a potential pathway for longitudinal, quantitative monitoring of disease activity at the point of care, while the systematic use of the Monte Carlo framework provides insight into the measurement geometry most suitable for a given clinical endpoint, whether that be detecting the presence or severity of rheumatoid arthritis. Full article
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13 pages, 2395 KB  
Article
Engineering the Future of Heart Failure Therapeutics: Integrating 3D Printing, Silicone Molding, and Translational Development for Implantable Cardiac Devices
by Carleigh Eagle, Aarti Desai, Michael Franklin, Robert Pooley, Elizabeth Johnson, Shawn Robinson, Mark Lopez and Rohan Goswami
Bioengineering 2026, 13(2), 192; https://doi.org/10.3390/bioengineering13020192 - 8 Feb 2026
Viewed by 620
Abstract
Three-dimensional (3D) anatomic modeling derived from high-resolution medical imaging, such as computed tomography (CT) and magnetic resonance imaging (MRI), has been increasingly adopted in preclinical testing and device development. This white paper describes a cardiac-specific workflow that integrates 3D printing and silicone molding [...] Read more.
Three-dimensional (3D) anatomic modeling derived from high-resolution medical imaging, such as computed tomography (CT) and magnetic resonance imaging (MRI), has been increasingly adopted in preclinical testing and device development. This white paper describes a cardiac-specific workflow that integrates 3D printing and silicone molding for support device development and procedural simulation. Patient-derived computed tomography angiography data were segmented using FDA-cleared medical modeling software to isolate the left ventricular anatomy and were further processed in computer-aided design (CAD) to ensure accurate physiological wall thickness and structural fidelity. Material jetting 3D printing was performed on a Stratasys J750 using material distributions designed to mimic the mechanical properties of myocardium, thereby approximating myocardial compliance. In parallel, stereolithography apparatus molds were designed from the left ventricle CAD model to cast transparent, pliable left ventricular models in Sorta-Clear™ 18 silicone. The 3D-printed models preserved intricate morphological detail and were suitable for mechanical manipulation and device deployment studies, whereas silicone models offered tunable mechanical properties, transparency for visualization, and durability for repeated use. Together, these complementary modalities provided rapid manufacturing capability and application-relevant physical representation. Case-specific parameters, strengths, and limitations of both models in enhancing patient care and device testing are highlighted, with relevance to heart failure applications. Current knowledge gaps, workflow and integration challenges, and future opportunities are identified, positioning this work as a reference framework for continued innovation in anatomic modeling. Within the collaborative framework of Mayo Clinic’s Anatomic Modeling Unit and Simulation Center, this integrated modeling workflow demonstrates the value of multidisciplinary collaboration between engineers and clinicians. Clinically, these patient-specific left ventricular models may enable pre-procedural device sizing and positioning and may support simulation of mechanical circulatory support (MCS) deployment while identifying possible anatomic constraints prior to intervention. This workflow has direct applicability in advanced heart failure patients undergoing MCS support, such as the Impella axillary MCS device or the durable LVAD, with potential to reduce procedural uncertainty while reducing complications and improving peri-procedural outcomes. Additionally, these models also serve as high-accuracy educational tools, enabling trainees and multidisciplinary care teams to visualize and possibly rehearse procedural steps while gaining hands-on experience in a risk-free environment. Full article
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17 pages, 10285 KB  
Article
Microcin C7 Prevents Cyclophosphamide-Induced Immunosuppression and Intestinal Injury by Modulating T-Cell Differentiation and Gut Microbiota Composition in Mice
by Jianfei Zhao, Zhongqian Lu, Jialin Wu, Li Wang, Jinxiu Huang and Feiyun Yang
Microorganisms 2026, 14(2), 350; https://doi.org/10.3390/microorganisms14020350 - 3 Feb 2026
Viewed by 454
Abstract
Microcin C7 (McC7) is a ribosomally synthesized antimicrobial peptide that has emerged as a promising candidate due to its dual antibacterial and immunomodulatory activities. This study evaluated the preventive effect of McC7 against cyclophosphamide (CTX)-induced immunosuppression and intestinal injury. An immunosuppression model was [...] Read more.
Microcin C7 (McC7) is a ribosomally synthesized antimicrobial peptide that has emerged as a promising candidate due to its dual antibacterial and immunomodulatory activities. This study evaluated the preventive effect of McC7 against cyclophosphamide (CTX)-induced immunosuppression and intestinal injury. An immunosuppression model was established by intraperitoneal CTX injection in mice, which were randomly allocated into five groups (n = 15): a negative control, a CTX model group, and three McC7 treatment groups receiving dietary McC7 at 100, 200, or 400 mg/kg both before and during CTX exposure. Body weight and feed intake were monitored throughout the study. Organ indices, serum biochemical parameters, immune and antioxidant markers, and intestinal morphology were assessed. Splenic T-cell subsets were analyzed by flow cytometry, and gut microbiota composition was evaluated by 16S rRNA sequencing. McC7 supplementation significantly attenuated the CTX-induced reduction in body weight, feed intake, and organ indices, ameliorated markers of hepatic and renal injury, and restored the splenic CD4+/CD8+ T-cell ratio. McC7 enhanced intestinal mucosal barrier integrity, increased the abundance of beneficial bacteria such as Candidatus Arthromitus and ASF356, and reduced the abundance of the potentially pathogenic genus Bilophila. In conclusion, our results demonstrate that McC7 alleviates CTX-induced immunosuppression by regulating T-cell differentiation, maintaining cytokine homeostasis, and modulating gut microbial composition to support intestinal health. Full article
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28 pages, 5622 KB  
Article
A Multi-Class Bahadur–Lazarsfeld Expansion Framework for Pixel-Level Fusion in Multi-Sensor Land Cover Classification
by Spiros Papadopoulos, Georgia Koukiou and Vassilis Anastassopoulos
Remote Sens. 2026, 18(3), 399; https://doi.org/10.3390/rs18030399 - 25 Jan 2026
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Abstract
In many land cover classification tasks, the limited precision of individual sensors hinders the accurate separation of certain classes, largely due to the complexity of the Earth’s surface morphology. To mitigate these issues, decision fusion methodologies are employed, allowing data from multiple sensors [...] Read more.
In many land cover classification tasks, the limited precision of individual sensors hinders the accurate separation of certain classes, largely due to the complexity of the Earth’s surface morphology. To mitigate these issues, decision fusion methodologies are employed, allowing data from multiple sensors to be synthesized into robust and more conclusive classification outcomes. This study employs fully polarimetric Synthetic Aperture Radar (PolSAR) imagery and leverages the strengths of three decomposition methods, namely Pauli’s, Krogager’s, and Cloude’s, by extracting their respective components for improved detection. From each decomposition method, three scattering components are derived, enabling the extraction of informative features that describe the scattering behavior associated with various land cover types. The extracted scattering features, treated as independent sensors, were used to train three neural network classifiers. The resulting outputs were then considered as local decisions for each land cover type and subsequently fused through a decision fusion rule to generate more complete and accurate classification results. Experimental results demonstrate that the proposed Multi-Class Bahadur–Lazarsfeld Expansion (MC-BLE) fusion significantly enhances classification performance, achieving an overall accuracy (OA) of 95.78% and a Kappa coefficient of 0.94. Compared to individual classification methods, the fusion notably improved per-class accuracy, particularly for complex land cover boundaries. The core innovation of this work is the transformation of the Bahadur–Lazarsfeld Expansion (BLE), originally designed for binary decision fusion into a multi-class framework capable of addressing multiple land cover types, resulting in a more effective and reliable decision fusion strategy. Full article
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19 pages, 5439 KB  
Article
Decoupling Additive and Non-Additive Genetic Effects to Optimize Breeding Strategies for Apple Phenology and Fruit Quality
by Pablo Asprelli, Guido Cipriani and Gloria De Mori
Horticulturae 2026, 12(1), 93; https://doi.org/10.3390/horticulturae12010093 - 16 Jan 2026
Viewed by 364
Abstract
Apple breeding programs focus on enhancing yield, quality, and disease resistance, with a strong emphasis on evaluating phenological traits like flowering time and pomological traits such as fruit size and flavour, which are crucial for commercial success and consumer preference. Twenty-four families were [...] Read more.
Apple breeding programs focus on enhancing yield, quality, and disease resistance, with a strong emphasis on evaluating phenological traits like flowering time and pomological traits such as fruit size and flavour, which are crucial for commercial success and consumer preference. Twenty-four families were obtained by crossing six apple varieties selected as pollen receptors and four apple genotypes resistant to scab selected as pollen donors. Data related to bud burst date, flowering date, harvest date, lengths of the periods between bud burst and flowering and from flowering to harvest (developmental period), fruit equatorial and polar diameter, fruit polar/diameter ratio, soluble solid content (SSC) and flesh firmness were analysed as a genetic partial diallel design. The study’s ANOVA on 24 fruit families across two years revealed significant genotype–environment interactions affecting flowering date, harvest date, and developmental periods, with some variables like fruit weight and soluble solids showing consistent variation. During each year, temperature influenced phenological phases, with earlier budbreak and flowering in warmer, less variable conditions in 2019. Analysis of genetic effects indicated high heritability for phenological traits and moderate heritability for fruit morphology and quality, with parental genetic contributions varying over years. Principal component and Procrustes analyses identified key variable groupings and parent profiles, highlighting genotypes such as ‘Granny Smith’, ‘McIntosh’, and ‘HM100’ with consistent additive effects, and certain families with notable heterotic performance. Overall, genetic and environmental interactions significantly shape phenological and fruit quality traits, guiding breeding strategies. Full article
(This article belongs to the Section Genetics, Genomics, Breeding, and Biotechnology (G2B2))
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