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Keywords = Paeonia lactiflora

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19 pages, 894 KB  
Review
Natural Products Targeting Immune Mechanisms in Ocular Inflammation: Uveitis and Dry Eye
by Wenjia Lu, Mingming Yang, Yaru Zou, Jing Zhang, Kyoko Ohno-Matsui and Koju Kamoi
Curr. Issues Mol. Biol. 2026, 48(4), 367; https://doi.org/10.3390/cimb48040367 - 1 Apr 2026
Viewed by 253
Abstract
At present, the clinical management of ocular inflammatory diseases predominantly relies on chemically synthesized therapeutic agents. Although these therapies demonstrate established efficacy, their long-term use is associated with substantial economic burden. In addition, they may cause ocular side effects and systemic adverse reactions [...] Read more.
At present, the clinical management of ocular inflammatory diseases predominantly relies on chemically synthesized therapeutic agents. Although these therapies demonstrate established efficacy, their long-term use is associated with substantial economic burden. In addition, they may cause ocular side effects and systemic adverse reactions involving the cardiovascular, hepatic, and renal systems. In contrast, natural products have attracted increasing attention in recent years because many are accessible, relatively cost-effective, and potentially well tolerated. Studies indicate that various natural products exert anti-inflammatory and immunomodulatory effects by inhibiting inflammatory signaling pathways such as NF-κB and MAPK, regulating immune cell function and alleviating oxidative stress responses. These multifunctional properties support their potential therapeutic value in various inflammatory diseases. Notably, several natural products have shown potential benefits in clinical trials; however, their investigation and application in ocular diseases remain relatively limited. In this review, we focus on uveitis and dry eye disease (DED) as representative ocular disease models and systematically summarize the current research progress on four natural products—Paeonia lactiflora extracts, resveratrol and its derivatives, curcumin, and boswellic acids in experimental studies of ocular diseases. We particularly focus on their effects in alleviating ocular surface inflammation and intraocular inflammatory responses through their immunomodulatory mechanisms. This review aims to provide a mechanistic framework for understanding the potential role of natural products as complementary or alternative strategies to current therapeutic approaches, while informing the development of novel therapeutics and future research directions in ocular diseases. Full article
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20 pages, 3955 KB  
Article
Investigation of the Enhancement Effect of Evodia rutaecarpa Volatile Oil on Transdermal Delivery of Total Glucosides of Paeony: Mechanistic Insight Based on Interactions Among Drug, Enhancer, and Skin
by Zhanghong Yao, Fei Song, Yan Liang, Yunfeng Liu, Weifeng Zhu, Yongmei Guan and Lili Liu
Pharmaceutics 2026, 18(4), 433; https://doi.org/10.3390/pharmaceutics18040433 - 31 Mar 2026
Viewed by 346
Abstract
Background: Total glycosides of peony (TGP) have therapeutic potential for immune-related and inflammatory skin diseases, but their skin absorption is not satisfactory. This study aims to investigate how Evodia rutaecarpa volatile oil (VO-ER) enhances the permeability of TGP. Methods: Safety assessment [...] Read more.
Background: Total glycosides of peony (TGP) have therapeutic potential for immune-related and inflammatory skin diseases, but their skin absorption is not satisfactory. This study aims to investigate how Evodia rutaecarpa volatile oil (VO-ER) enhances the permeability of TGP. Methods: Safety assessment was conducted through cell delivery and skin erythema tests. The chemical composition of VO-ER was identified via GC-MS. The study was conducted using modified Franz diffusion cells, microdialysis, confocal laser scanning microscopy (CLSM), attenuated total reflection–Fourier transform infrared spectroscopy (ATR-FTIR), molecular docking and molecular dynamics simulations (MD), laser Doppler flowmetry (LDF), and the western blotting method. Results: The study found that VO-ER promotes the permeation of total glycosides of peony in a concentration-dependent manner by disrupting the intercellular lipid tissue structure, downregulating the expression of claudin-1, claudin-7, and occludin, and improving local microcirculation, thereby promoting the absorption of TGP. Conclusions: VO-ER enhances the transdermal absorption of TGP through multiple mechanisms, such as disrupting the skin lipid barrier, downregulating tight junction proteins, and improving local skin microcirculation. This study provides a theoretical basis for VO-ER as a safe and effective new transdermal penetration enhancer, offering support for the development of topical preparations containing Evodia rutaecarpa and Paeonia lactiflora. Full article
(This article belongs to the Section Biopharmaceutics)
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14 pages, 4293 KB  
Article
Bioinformatics Analysis and Functional Verification of PlDGAT2 Gene Associated with Triacylglycerol Biosynthesis in Paeonia lactiflora Pall.
by Jiasong Meng, Di Ma, Huajie Xu, Ziyi Qiu, Daqiu Zhao and Jun Tao
Horticulturae 2026, 12(4), 410; https://doi.org/10.3390/horticulturae12040410 - 25 Mar 2026
Viewed by 234
Abstract
Seeds of Paeonia lactiflora Pall. ‘Hangshao’ contain over 20% oil, of which more than 90% are unsaturated fatty acids, showing its high potential as an oil crop. Triacylglycerol (TAG) is the main storage form of fatty acids, and diacylglycerol acyltransferase 2 (DGAT2) is [...] Read more.
Seeds of Paeonia lactiflora Pall. ‘Hangshao’ contain over 20% oil, of which more than 90% are unsaturated fatty acids, showing its high potential as an oil crop. Triacylglycerol (TAG) is the main storage form of fatty acids, and diacylglycerol acyltransferase 2 (DGAT2) is a key enzyme in TAG biosynthesis. In this study, the full-length cDNA of PlDGAT2 (326 amino acids) was cloned. Subcellular localization assays further indicated that it localized in the endoplasmic reticulum. Functional verification showed that silencing PlDGAT2 in herbaceous peony decreased the level of total fatty acids, palmitic acid (C16:0, PA) and α-linolenic acid (C18:3, ALA), but increased linoleic acid (C18:2, LA) in leaves. Overexpressing PlDGAT2 in tobacco elevated the content of total fatty acids, PA, and ALA in seeds, while also enlarging the seed sizes, but it reduced the LA content in tobacco seeds. This study suggests that PlDGAT2 contributes to the accumulation of ALA and total fatty acids, offering a potential gene target for improving the oil quality of herbaceous peony seeds. Full article
(This article belongs to the Section Genetics, Genomics, Breeding, and Biotechnology (G2B2))
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21 pages, 4064 KB  
Article
Study on the Mechanism of Paeoniflorin, an Active Component of Paeonia lactiflora Pall., in Improving Skin Pigmentation by Inhibiting the TNF-α Signaling Pathway
by Kela Yin, Song Wang, Weina Wang, Tingting Liu, Dejun Qi, Wei Wang, Marwan M. A. Rashed, Hong Duan, Chenghui He, Mengxiao Zhang, Hao Liu and Kefeng Zhai
Pharmaceuticals 2026, 19(3), 443; https://doi.org/10.3390/ph19030443 - 9 Mar 2026
Viewed by 621
Abstract
Background/Objectives: This article employs both in vivo and in vitro experiments. Methods: The core targets and key pathways of Paeoniflorin were predicted using a PPI network analysis, GO analysis, and KEGG analysis. Subsequently, molecular docking analysis and molecular simulation dynamics were [...] Read more.
Background/Objectives: This article employs both in vivo and in vitro experiments. Methods: The core targets and key pathways of Paeoniflorin were predicted using a PPI network analysis, GO analysis, and KEGG analysis. Subsequently, molecular docking analysis and molecular simulation dynamics were performed on the core effector. In vitro experiments employed a UVB-irradiated B16F10 cell model. The effects of Paeoniflorin on melanin content and tyrosinase activity were evaluated. Apoptosis and inflammatory cytokine levels were also assessed in vitro. In vivo experiments used a model combining progesterone injection with UV irradiation. Histopathological skin changes and melanin granule distribution were examined using HE staining. Skin melanin content, tyrosinase activity, and expression levels of related proteins were measured. Additionally, ELISA assays measured serum IL-6 and TNF-α inflammatory cytokines in mice. Results: Rese screening identified 69 targets involved in Paeoniflorin’s effects on melanogenesis, including TNF-α, IL-6, TP53, MAPK3, HIF1A and BCL2. Molecular docking and molecular dynamics simulations indicate that Paeoniflorin exhibits strong affinity for tumor necrosis factor-α. In in vitro experiments, Paeoniflorin significantly reduced UVB-induced melanin content and tyrosinase activity in B16F10 cells. It also promoted melanocyte apoptosis and a dose-dependent decrease in IL-6 and TNF-α levels. In vivo, Paeoniflorin significantly reduced epidermal and dermal thickness and inhibited inflammatory infiltration. It decreased melanin granules, melanin content, tyrosinase activity, and IL-6 and TNF-α levels in mouse skin tissue. Conclusions: This research indicates that Paeoniflorin can significantly suppress UVB-induced cellular inflammatory responses by inhibiting the TNF signaling pathway, thereby reducing hyperpigmentation. Full article
(This article belongs to the Section Natural Products)
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33 pages, 11497 KB  
Article
Nectary Structure and Nectar Secretion Characteristics Among Various Cultivars of Paeonia lactiflora
by Hui Cai, Wenjie Ma, Yingling Wan and Yan Liu
Plants 2026, 15(4), 580; https://doi.org/10.3390/plants15040580 - 12 Feb 2026
Viewed by 561
Abstract
Background: Paeonia lactiflora Pall. produces substantial quantities of nectar during the bud stage. In the production of cut flowers, this nectar attracts contaminants that compromise the quality of the flowers. The current practice of rinsing flowers with clean water escalates production costs. Consequently, [...] Read more.
Background: Paeonia lactiflora Pall. produces substantial quantities of nectar during the bud stage. In the production of cut flowers, this nectar attracts contaminants that compromise the quality of the flowers. The current practice of rinsing flowers with clean water escalates production costs. Consequently, reducing nectar secretion during the bud stage has emerged as a significant technical challenge for the industry. Nonetheless, insufficient fundamental knowledge concerning the structure of P. lactiflora nectaries and the physiology of nectar secretion impedes the development of pertinent regulatory technologies. Methods: This study established a “nectar secretion index” to evaluate nectar production in various P. lactiflora cultivars. Nectar sugar concentration and composition were measured using a refractometer and gas chromatography–mass spectrometry (GC-MS). Observations of changes in nectary epidermal morphology and anatomical structure during nectar secretion were conducted using scanning electron microscopy and light microscopy. Key Results: The quantity of nectar secreted by various P. lactiflora cultivars can differ. The indices were not significantly correlated with flowering period, flower color, or flower type. At the peak of nectar secretion, the sugar concentration of nectar secretion by different cultivars’ flower buds varied. Sucrose is the primary sugar component in this nectar. Nectar is secreted along the basal margins of the bracts and sepals on the abaxial surface of all cultivars. Specialized raised stomata are located on the upper epidermis, through which nectar is secreted. In contrast, the epidermal stomata located outside nectar-secreting areas exhibit a normal morphology. Specialized stomata do not secrete nectar concurrently. The stomatal aperture and the percentage of nectar-secreting stomata at the secretion sites are significantly higher in high-nectar-producing cultivars than in low-nectar-producing cultivars. Anatomical observations of bract nectaries indicate that, irrespective of nectar production levels, specialized stomata are consistently located adjacent to vascular bundles. During the initial stage of nectar secretion, no starch was detected in the bract nectaries. In contrast, the stomata in non-secretory epidermal cells of bracts maintain a normal morphology, and calcium oxalate crystals were observed within the subepidermal tissues. Throughout the nectar secretion process, the content of photosynthetic pigments and the Fv/Fm ratio in the bracts and sepals of various cultivars correlated with nectar secretion volume. Conclusions: This study, informed by observations of numerous P. lactiflora cultivars, elucidates the structural characteristics of its nectaries and the nectar secretion properties of various cultivars during the bud stage. It confirms that these nectaries are classified as extrafloral nectaries, specifically structural nectaries consisting of specialized raised stomata and closely associated vascular bundles beneath them. No significant differences in nectary structure or location were noted among cultivars with differing nectar yields. However, both the aperture of nectary stomata and the percentage of nectar-secreting stomata exhibited a significant positive correlation with secretion levels. The intrinsic photosynthetic potential at the nectary sites varies significantly among cultivars. The nectar is not derived from stored cellular starch but likely originates simultaneously from both photosynthesis and phloem transport. These findings provide a theoretical foundation for the development of subsequent regulatory technologies. Full article
(This article belongs to the Section Horticultural Science and Ornamental Plants)
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15 pages, 6323 KB  
Article
Multi-Omics Analysis Reveals Key Regulators and Candidate Enzymes in the Biosynthesis of Albiflorin in Paeonia lactiflora
by Chunlan Peng, Yuan Zhou, Xuanyu He, Chenghua Gong, Juan Zhang, Chongbo Sun, Linying Li, Guoyan Zhao, Yuqing He, Xueying Zhang, Jianzhi Pan, Mingqi Liu, Gaojie Hong and Yanping Zhao
Horticulturae 2026, 12(2), 188; https://doi.org/10.3390/horticulturae12020188 - 3 Feb 2026
Viewed by 464
Abstract
Paeonia lactiflora is an important traditional Chinese medicine. Its core bioactive component, albiflorin, exhibits significant pharmacological activity, but its biosynthetic pathway remains unclear, severely limiting the targeted regulation and sustainable utilization of this compound. In this study, integrated transcriptomic and metabolomic analyses revealed [...] Read more.
Paeonia lactiflora is an important traditional Chinese medicine. Its core bioactive component, albiflorin, exhibits significant pharmacological activity, but its biosynthetic pathway remains unclear, severely limiting the targeted regulation and sustainable utilization of this compound. In this study, integrated transcriptomic and metabolomic analyses revealed that tissue specificity is a key factor driving metabolite accumulation. Weighted Gene Co-expression Network Analysis (WGCNA) identified a gene module significantly positively correlated with albiflorin content. From this module, key candidate genes were screened, including MYB and bHLH transcription factor genes as well as CYP450. The expression patterns of these candidate genes were subsequently validated by qRT-PCR, confirming a strong correlation between the transcriptomic and experimental data. These findings not only clarify the molecular basis for the tissue-specific accumulation of albiflorin and provide critical targets for elucidating its complete biosynthetic pathway but also lay a solid foundation for molecular breeding and quality improvement of Paeonia lactiflora. Full article
(This article belongs to the Section Genetics, Genomics, Breeding, and Biotechnology (G2B2))
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18 pages, 1992 KB  
Article
Paeonia lactiflora Callus-Derived Polynucleotides Enhance Collagen Accumulation in Human Dermal Fibroblasts
by Soyoung Hwang, Seunghye Park, Jin Woo Lee, Mira Park, Le Anh Nguyet, Yongsung Hwang, Keunsun Ahn, Hyun-young Shin and Kuk Hui Son
J. Funct. Biomater. 2026, 17(1), 56; https://doi.org/10.3390/jfb17010056 - 22 Jan 2026
Viewed by 851
Abstract
Plant-derived polynucleotides (PNs) have emerged as promising regenerative biomolecules; however, their mechanisms remain less defined than those of salmon-derived polydeoxyribonucleotides (S-PDRNs). Here, we extracted polynucleotides from Paeonia lactiflora callus (PL-PN) and evaluated their biological effects on human dermal fibroblasts. PL-PN treatment increased cell [...] Read more.
Plant-derived polynucleotides (PNs) have emerged as promising regenerative biomolecules; however, their mechanisms remain less defined than those of salmon-derived polydeoxyribonucleotides (S-PDRNs). Here, we extracted polynucleotides from Paeonia lactiflora callus (PL-PN) and evaluated their biological effects on human dermal fibroblasts. PL-PN treatment increased cell viability and pro-collagen I α1 secretion. PL-PN enhanced adenosine A2A receptor expression and activated the cyclic adenosine monophosphate (cAMP)/protein kinase A (PKA)/cAMP response element-binding protein (CREB) pathway, accompanied by increased Cyclin D1 levels, retinoblastoma protein (Rb) phosphorylation, and nuclear proliferating cell nuclear antigen (PCNA) levels, indicating an accelerated G1/S transition. PL-PN also significantly reduced nuclear NF-κB localization and downregulated MMP1, MMP3, MMP9, and MMP13, suggesting attenuation of inflammatory and catabolic signaling. Furthermore, PL-PN increased TGF-β maturation, Smad2/3 phosphorylation, and the transcription of COL1A1, COL3A1, and elastin, resulting in enhanced collagen and elastin deposition. These effects are comparable to those of S-PDRN. Although the pathway specificity and in vivo relevance require further studies, our findings provide evidence that PL-PN promotes extracellular matrix regeneration via coordinated proliferative, anabolic, and anti-inflammatory actions. Thus, PL-PN represents a potential sustainable plant-based alternative to S-PDRN for dermatological regeneration. Full article
(This article belongs to the Special Issue Natural Biomaterials for Biomedical Applications)
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13 pages, 5104 KB  
Article
Functional Characterization of Herbaceous Peony PTC52 Gene Under High Temperature Stress
by Mengting Zu, Jun Tao and Daqiu Zhao
Agriculture 2026, 16(1), 82; https://doi.org/10.3390/agriculture16010082 - 30 Dec 2025
Viewed by 355
Abstract
High temperature stress severely compromises plant growth and productivity by triggering chlorophyll loss. Plant protochlorophyllide-dependent translocon component of 52 kDa (PTC52) has been proven to be involved in chlorophyll biosynthesis, yet its functional role in plant high-temperature stress response remains uncharacterized. In our [...] Read more.
High temperature stress severely compromises plant growth and productivity by triggering chlorophyll loss. Plant protochlorophyllide-dependent translocon component of 52 kDa (PTC52) has been proven to be involved in chlorophyll biosynthesis, yet its functional role in plant high-temperature stress response remains uncharacterized. In our study, PlPTC52 was isolated and characterized from herbaceous peony (Paeonia lactiflora Pall.), an economically important ornamental species susceptible to high temperature stress. The PlPTC52 gene comprised a 1647 bp coding sequence that translates into a 548-amino-acid protein. Subcellular localization confirmed its chloroplast localization, consistent with its putative role in chlorophyll biosynthesis. Functional analyses showed that silencing of PlPTC52 in P. lactiflora accelerated chlorophyll loss, increased reactive oxygen species accumulation, and impaired photosystem II efficiency and membrane integrity under high temperature stress. Conversely, overexpression of PlPTC52 in Nicotiana tabacum decelerated chlorophyll loss, decreased reactive oxygen species accumulation, and improved photosystem II efficiency and membrane integrity under high temperature stress. Collectively, this study provides the first functional evidence implicating PTC52 in plant responses to high temperature stress and identifies PlPTC52 as a potential genetic resource for enhancing thermotolerance in horticultural crops. Full article
(This article belongs to the Section Crop Genetics, Genomics and Breeding)
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18 pages, 901 KB  
Article
Multifunctional NADES-Based Extracts from Paeonia lactiflora Pall. Flowers for Potential Cosmetic and Pharmaceutical Applications
by Carla Villa, Eleonora Russo, Anna Maria Schito, Francesco Saverio Robustelli della Cuna, Cristina Sottani, Marta Barabino and Debora Caviglia
Molecules 2026, 31(1), 97; https://doi.org/10.3390/molecules31010097 - 25 Dec 2025
Viewed by 735
Abstract
Paeonia lactiflora Pall. is a perennial herbaceous plant widely renowned for its floral ornamental appeal, distinctive pleasant scent, and utilization in folk remedies. Roots and barks are traditionally used in Chinese medicine for various properties, including anti-inflammatory, antioxidant, antibacterial, anticancer, cardiovascular, and neuroprotective [...] Read more.
Paeonia lactiflora Pall. is a perennial herbaceous plant widely renowned for its floral ornamental appeal, distinctive pleasant scent, and utilization in folk remedies. Roots and barks are traditionally used in Chinese medicine for various properties, including anti-inflammatory, antioxidant, antibacterial, anticancer, cardiovascular, and neuroprotective effects. Considering the growing interest and demand in the pharmaceutical and cosmetic fields for sustainable and bioactive botanical derivatives, this study aimed to apply NADES (natural deep eutectic solvents) extraction on fresh flowers of Paeonia lactiflora Pall. The purpose was to obtain a natural, multifunctional, and ready-to-use cosmetic ingredient with concurrent antioxidant activity, antimicrobial functionalities, and olfactive properties. The eutectic systems selected in this study were composed of betaine as the hydrogen bond acceptor and glycerol and/or sorbitol as the hydrogen bond donors. These eutectic systems under microwave activation led to a rapid extraction, from peony fresh flowers, of considerable phenolic amounts (from 33.0 to 34.4 mg of gallic acid equivalents per gram of fresh flowers), which confer to the whole NADES-based extract an excellent radical scavenging activity (around 87.5%, compared to Trolox) and a pleasant fragrance, due to the extraction of some characteristic volatile compounds, as confirmed by GC-MS analysis. Antimicrobial assays against different Gram-positive and Gram-negative strains demonstrated good inhibitory activity of the sample against multidrug-resistant Staphylococcus species (MIC ranging from 0.9 to 14.5 mg/mL) and against Enterococcus species (from 28.8 to 57.8 mg/mL). Furthermore, results on different Staphylococcus aureus strains disclosed additional interesting anti-biofilm properties. Preliminary long-term studies (up to 9 months) on these combined properties highlighted the stabilizing effect of NADESs on the active metabolites, confirming their potential as natural and functional ingredients that could be directly incorporated into pharmaceutical and cosmetic formulations, offering enhanced efficacy and improved stability. Full article
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19 pages, 2149 KB  
Article
Anti-Aging Efficacy of Low-Molecular-Weight Polydeoxyribonucleotide Derived from Paeonia lactiflora
by Sun-Uk Bak, Min Sook Jung, Da Jung Kim, Hee Un Jin, Seung Youn Lee and Chae Eun An
Int. J. Mol. Sci. 2026, 27(1), 220; https://doi.org/10.3390/ijms27010220 - 24 Dec 2025
Cited by 1 | Viewed by 1874
Abstract
Polydeoxyribonucleotide (PDRN), a DNA fragment mixture, exerts biological effects via adenosine A2A receptor and salvage pathway activation. Here, Paeonia lactiflora-derived PDRN (Peony PDRN) is proposed as a plant-based alternative to salmon-derived PDRN. While P. lactiflora is known for its medicinal properties, the [...] Read more.
Polydeoxyribonucleotide (PDRN), a DNA fragment mixture, exerts biological effects via adenosine A2A receptor and salvage pathway activation. Here, Paeonia lactiflora-derived PDRN (Peony PDRN) is proposed as a plant-based alternative to salmon-derived PDRN. While P. lactiflora is known for its medicinal properties, the biological functions of Peony PDRN have not been characterized. To validate and optimize its efficacy, we systematically compared the biological activities of three molecular weight groups of Peony PDRN (high, medium, and low) using in vitro assays and clinical studies. The low-molecular-weight fraction (Low-Peony PDRN) markedly enhanced skin cell proliferation and migration, upregulated extracellular matrix-related genes (COL1A1, COL5A1, ELN, and FBN1), and promoted keratinocyte differentiation and epidermal barrier formation by increasing COL7A1, IVL, FLG, and OCLN expression. It also reduced reactive oxygen species levels and suppressed key inflammatory mediators. Clinically, topical application of Low-Peony PDRN for 2 weeks markedly reduced transepidermal water loss in a sodium lauryl sulfate-induced skin damage model, enhancing barrier recovery (n = 10). Periorbital skin elasticity improved after 4 weeks of treatment (Approval No. Intertek IRB-202505-HR(1)-0001, 20 June 2025). These results indicate that Low-Peony PDRN is a promising plant-derived biomaterial of pharmacological and cosmetic significance, with potential to address skin aging. Full article
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23 pages, 13046 KB  
Article
Integrated Transcriptomic and Physiological Data Offer Novel Insights into Viability Changes in Paeonia lactiflora Seeds After Cryopreservation
by Ruifen Ren, Zhe Ji, Qinlu Zhu, Bairu Zhang and Xiuyun Yang
Horticulturae 2025, 11(12), 1494; https://doi.org/10.3390/horticulturae11121494 - 10 Dec 2025
Viewed by 480
Abstract
While water content is a critical factor affecting the outcome of cryopreservation, the mechanism by which it influences seed viability after cryopreservation remains unclear. In this study, Paeonia lactiflora seeds with different water content as experimental materials, analyzed the seed viability, oxidative stress [...] Read more.
While water content is a critical factor affecting the outcome of cryopreservation, the mechanism by which it influences seed viability after cryopreservation remains unclear. In this study, Paeonia lactiflora seeds with different water content as experimental materials, analyzed the seed viability, oxidative stress indicators, and transcriptomics before and after cryopreservation, to explore the mechanism of the seed viability changes. The results demonstrated that after cryopreservation, seeds with high water content displayed reduced viability, along with abnormal accumulation of reactive oxygen species (ROS) content, which subsequently triggered ROS-mediated oxidative damage. In contrast, seeds with low water exhibited enhanced following cryopreservation, their ROS levels remained relatively stable, while notable alterations were detected in multiple antioxidant system parameters. At the transcriptional level, 1224 differentially expressed genes (DEGs) up-regulated and 1839 DEGs were down-regulated in seeds with high water content after cryopreservation, but 2090 DEGs up-regulated and 1783 DEGs down-regulated in the seeds with low water content. Among them, 687 DEGs were common to both the high- and low-water content seed groups. Gene Ontology (GO) functional analysis indicated that these DEGs are primarily involved physiological metabolic processes including osmotic response, glucosidase activity, protein kinase binding, and response to hydrogen peroxide. Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis confirmed that the Mitogen-Activated Protein Kinase (MAKP) plant signaling pathway and the starch and sucrose metabolism pathway are the key pathways governing the response of seeds with varying water contents to cryopreservation. Finally, through weighted gene co-expression network pinpointed DHN1 and LEA34 as the core genes regulating changes in seed viability after cryopreservation. These findings offer a broader perspective for in-depth exploration of the molecular regulatory mechanisms underlying the differences in seed viability changes after cryopreservation and are crucial for comprehensively clarifying the precise pathways via which these key genes regulate seed viability changes after cryopreservation. Full article
(This article belongs to the Section Propagation and Seeds)
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19 pages, 16157 KB  
Article
Genome-Wide Identification and Expression Analysis of the AS2/LOB Transcription Factor Family in Asparagus officinalis
by Xiao Ye, Yu Li, Sheng-Fu Zhong, Wei-Nian Huang, Jing Zeng, Qian Zuo, Shu Li, Pei Sun, Shan Tao, Ling Huang, Ming-Zhi Zhong, Wen-Ji Zhao, Yu-Xiang Shen, Yang Tao and Jie-Qiong Deng
Genes 2025, 16(12), 1411; https://doi.org/10.3390/genes16121411 - 27 Nov 2025
Viewed by 625
Abstract
Background: AS2/LOB transcription factors are central regulators of plant organ development and stress responses, yet their characteristics in the monocot crop Asparagus officinalis remain uncharacterized. Methods: In this study, we leveraged the A. officinalis genome to perform a genome-wide identification and comprehensive characterization [...] Read more.
Background: AS2/LOB transcription factors are central regulators of plant organ development and stress responses, yet their characteristics in the monocot crop Asparagus officinalis remain uncharacterized. Methods: In this study, we leveraged the A. officinalis genome to perform a genome-wide identification and comprehensive characterization of the AS2/LOB family. We identified 20 AoAS genes (AoAS01AoAS20) and analyzed their physicochemical properties, chromosomal localization, conserved domains and motifs, phylogenetic relationships, gene structures, cis-regulatory elements, duplication history, syntenic relationships, protein–protein interaction networks and expression profiles. Results: Phylogenetic analysis divided the AoAS proteins into two major clades (Class I and Class II), while chromosomal mapping revealed their uneven distribution across eight chromosomes. Analysis of publicly available RNA-seq data showed that 14 AoAS genes exhibit dynamic expression across four developmental stages of the stem (10, 25, 40 and 60 cm), with AoAS11 and AoAS14 consistently displaying high transcript levels. Under drought stress, 12 AoAS genes showed significant transcriptional changes, with AoAS04 and AoAS14 exhibiting the most pronounced expression responses. Conclusions: Together, these results provide a genome-wide portrait of the AS2/LOB family in asparagus, reveal their potential roles in development and drought response, nominate candidate genes for breeding stress-tolerant cultivars, and offer a useful benchmark for molecular breeding in economically important species including peony (Paeonia lactiflora). Full article
(This article belongs to the Section Bioinformatics)
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18 pages, 2194 KB  
Article
Driving Effects of Soil Microbial Diversity on Soil Multifunctionality in Carya illinoinensis Agroforestry Systems
by Cheng Huang, Mengyu Zhou, Fasih Ullah Haider, Lin Wu, Jia Xiong, Songling Fu, Zhaocheng Wang, Fan Yang and Xu Li
Microorganisms 2025, 13(11), 2425; https://doi.org/10.3390/microorganisms13112425 - 23 Oct 2025
Viewed by 961
Abstract
Sustainable soil management requires striking a balance between productivity and soil health. While agroforestry practices are known to improve soil health and ecosystem functions, the contribution of microbial diversity to maintaining multifunctional soil processes in pecan (Carya illinoinensis) cultivation has yet [...] Read more.
Sustainable soil management requires striking a balance between productivity and soil health. While agroforestry practices are known to improve soil health and ecosystem functions, the contribution of microbial diversity to maintaining multifunctional soil processes in pecan (Carya illinoinensis) cultivation has yet to be fully elucidated. This study examined microbial diversity, soil functions, and multifunctionality across different pecan intercropping setups. We compared a monoculture pecan plantation with three agroforestry models: pecan–Paeonia suffruticosaHemerocallis citrina (CPH), pecan–P. suffruticosa (CPS), and pecan–P. lactiflora (CPL). We employed high-throughput sequencing (16S and ITS) to determine the soil bacterial and fungal communities and analyzed the species diversity, extracellular enzyme activities, and physicochemical properties. Soil multifunctionality (SMF) was evaluated using 20 indicators for nutrient supply, storage, cycling, and environmental regulation. Agroforestry increased soil fungal diversity and improved multifunctionality when compared to monoculture. The CPS and CPH models were the most beneficial, increasing multifunctionality by 0.74 and 0.55 units, respectively. Structural equation modeling revealed two key pathways: bacterial diversity significantly enhanced nutrient cycling and environmental regulation, whereas fungal diversity primarily promoted nutrient cycling. These pathways together delivered clear gains in multifunctionality. Random forest analysis identified key predictors (total nitrogen, total carbon, available potassium, β-1,4-N-acetylglucosaminidase, and alkaline phosphatase), highlighting the joint importance of nutrients and microbial enzymes. Our results demonstrate that selecting species in pecan agroforestry alters microbial communities and activates key functions that support soil health and long-term resilience. Hence, pecan agroforestry maintains SMF through microbial processes, with CPS showing the strongest effect. These results can inform species selection and encourage broader testing for resilient, biodiversity-based farming practices. Full article
(This article belongs to the Special Issue Diversity, Function, and Ecology of Soil Microbial Communities)
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21 pages, 5953 KB  
Article
Network Pharmacology and Experimental Validation Identify Paeoniflorin as a Novel SRC-Targeted Therapy for Castration-Resistant Prostate Cancer
by Meng-Yao Xu, Jun-Biao Zhang, Yu-Zheng Peng, Mei-Cheng Liu, Si-Yang Ma, Ye Zhou, Zhi-Hua Wang and Sheng Ma
Pharmaceuticals 2025, 18(8), 1241; https://doi.org/10.3390/ph18081241 - 21 Aug 2025
Viewed by 2068
Abstract
Background: Despite advances in prostate cancer treatment, castration-resistant prostate cancer (CRPC) remains clinically challenging due to inherent therapy resistance and a lack of durable alternatives. Although traditional Chinese medicine offers untapped potential, the therapeutic role of paeoniflorin (Pae), a bioactive compound derived from [...] Read more.
Background: Despite advances in prostate cancer treatment, castration-resistant prostate cancer (CRPC) remains clinically challenging due to inherent therapy resistance and a lack of durable alternatives. Although traditional Chinese medicine offers untapped potential, the therapeutic role of paeoniflorin (Pae), a bioactive compound derived from Paeonia lactiflora, in prostate cancer has yet to be investigated. Methods: Using an integrative approach (network pharmacology, molecular docking, and experimental validation), we identified Pae key targets, constructed protein–protein interaction networks, and performed GO/KEGG pathway analyses. A Pae-target-based prognostic model was developed and validated. In vitro and in vivo assays assessed Pae effects on proliferation, migration, invasion, apoptosis, and tumor growth. Results: Pae exhibited potent anti-CRPC activity, inhibiting cell proliferation by 60% and impairing cell migration by 65% compared to controls. Mechanistically, Pae downregulated SRC proto-oncogene, non-receptor tyrosine kinase (SRC) mRNA expression by 68%. The Pae-target-based prognostic model stratified patients into high- and low-risk groups with distinct survival outcomes. Organoid and xenograft studies confirmed Pae-mediated tumor growth inhibition and SRC downregulation. Conclusions: Pae overcomes CRPC resistance by targeting SRC-mediated pathways, presenting a promising therapeutic strategy. Our findings underscore the utility of network pharmacology-guided drug discovery and advocate for further clinical exploration of Pae in precision oncology. Full article
(This article belongs to the Section Pharmacology)
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24 pages, 3598 KB  
Article
Comprehensive Analysis of the Complete Mitochondrial Genome of Paeonia ludlowii Reveals a Dual-Circular Structure and Extensive Inter-Organellar Gene Transfer
by Zhefei Zeng, Zhengyan Zhang, Ngawang Norbu, Ngawang Bonjor, Xin Tan, Shutong Zhang, Norzin Tso, Junwei Wang and La Qiong
Biology 2025, 14(7), 854; https://doi.org/10.3390/biology14070854 - 14 Jul 2025
Cited by 2 | Viewed by 1229
Abstract
Paeonia ludlowii, a critically endangered species endemic to Tibet, China, possesses significant ornamental, culinary, and medicinal value. However, its mitochondrial genome remains understudied, limiting insights into its evolutionary mechanisms and constraining conservation genetics applications and molecular breeding programs. We present the first [...] Read more.
Paeonia ludlowii, a critically endangered species endemic to Tibet, China, possesses significant ornamental, culinary, and medicinal value. However, its mitochondrial genome remains understudied, limiting insights into its evolutionary mechanisms and constraining conservation genetics applications and molecular breeding programs. We present the first complete assembly and comprehensive analysis of the P. ludlowii mitochondrial genome. Most remarkably, we discovered that the P. ludlowii mitogenome exhibits an atypical dual-circular structure, representing the first documented occurrence of this architectural feature within the genus Paeonia. The assembled genome spans 314,371 bp and encodes 42 tRNA genes, 3 rRNA genes, and 31 protein-coding genes, with a pronounced adenine–thymine bias. This multipartite genome structure is characterized by abundant repetitive elements (112 functionally annotated SSRs, 33 tandem repeats, and 945 dispersed repeats), which potentially drive genome rearrangements and facilitate adaptive evolution. Analyses of codon usage bias and nucleotide diversity revealed highly conserved gene expression regulation with limited variability. Phylogenetic reconstruction confirms that P. ludlowii, P. suffruticosa, and P. lactiflora form a monophyletic clade, reflecting close evolutionary relationships, while extensive syntenic collinearity with other Paeonia species underscores mitochondrial genome conservation at the genus level. Extensive inter-organellar gene transfer events, particularly from chloroplast to mitochondrion, suggest that such DNA exchanges enhance genetic diversity and promote environmental adaptation. The discovery of the dual-circular architecture provides novel insights into plant mitochondrial genome evolution and structural plasticity. This study elucidates the unique structural characteristics of the P. ludlowii mitochondrial genome and establishes a crucial genetic foundation for developing targeted conservation strategies and facilitating molecular-assisted breeding programs for this endangered species. Full article
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