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13 pages, 1519 KB  
Article
Supplementary Feeding Regulates Muscle Development of Oula Sheep (Tibetan Sheep, Ovis aries) Through Glucose Metabolism Pathway
by Yumeng Li, Yanhao Wang, Mingyi Yan, Sen Wu, Meng Liu and Sayed Haidar Abbas Raza
Animals 2025, 15(17), 2626; https://doi.org/10.3390/ani15172626 - 8 Sep 2025
Abstract
To investigate the genetic regulatory mechanism of supplementary feeding on muscle development in Oula sheep, we employed transcriptomic analysis to explore the differentially expressed genes (DEGs) in the longissimus dorsi muscle of Oula sheep at different ages under conditions of supplementary feeding and [...] Read more.
To investigate the genetic regulatory mechanism of supplementary feeding on muscle development in Oula sheep, we employed transcriptomic analysis to explore the differentially expressed genes (DEGs) in the longissimus dorsi muscle of Oula sheep at different ages under conditions of supplementary feeding and non-supplementary feeding, as well as the significantly enriched Gene Ontology (GO) terms and Kyoto Encyclopedia of Genes and Genomes (KEGG) signaling pathways of DEGs. Moreover, by combining with the method of weighted gene co-expression network analysis, we screened for the potential hub genes that might play crucial roles. The results demonstrated that the CD4 and ICAM1 genes and the PI3K-Akt signaling pathway might exert important functions during the lamb stage. At the growth stage, the AGL, PGM2L1, PRKAA2, NEDD4, and GBE1 genes might serve as core genes to regulate the growth of skeletal muscle in Oula sheep after supplementary feeding through signaling pathways such as starch and sucrose metabolism and insulin signaling pathway. This outcome provides a molecular-level interpretation of the regulatory mechanism of supplementary feeding on muscle growth and development in Oula sheep at different ages, offering a theoretical basis for the further improvement of the meat quality of Oula sheep and the enhancement of the quality of livestock products in the Qinghai–Tibet Plateau region. Full article
(This article belongs to the Section Animal Physiology)
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26 pages, 4020 KB  
Article
Study on the Plateau Adaptive Synergistic Mechanism of Rumen Microbiome-Metabolome-Resistome in Tibetan Sheep
by Xu Gao, Qianling Chen, Yuzhu Sha, Yanyu He, Xiu Liu, Xiaowei Chen, Pengyang Shao, Wei Huang, Yapeng He, Mingna Li, Zhiyun Hao, Bingang Shi and Jianfeng Xu
Microorganisms 2025, 13(9), 2049; https://doi.org/10.3390/microorganisms13092049 - 3 Sep 2025
Viewed by 186
Abstract
Tibetan sheep are an important livestock breed adapted to the extreme environment of the Qinghai–Tibet Plateau (QTP). Their energy metabolism and environmental adaptability are highly dependent on the rumen microbiome. However, systematic comparisons of the rumen microbiome, its functions, and the resistome between [...] Read more.
Tibetan sheep are an important livestock breed adapted to the extreme environment of the Qinghai–Tibet Plateau (QTP). Their energy metabolism and environmental adaptability are highly dependent on the rumen microbiome. However, systematic comparisons of the rumen microbiome, its functions, and the resistome between plateau-adapted breeds and lowland breeds remain insufficient. In this study, 6 Tibetan sheep (TS) and 6 Hu sheep (HS) were selected. All the selected sheep had a body weight of 34 kg (±0.5 kg) and an age of 1 year (±1 month) and were all managed under local traditional natural grazing (without supplementary feeding). Using metagenomics and metabolomics techniques, systematic comparative analysis was conducted on the differences in rumen microbial community structure, functions, resistome, and metabolites between the two breeds. Metagenomic analysis showed that at the phylum level, the abundance of Bacteroidetes in the rumen of TS was significantly higher than that in HS (p < 0.05); at the genus level, the abundance of Bacteroides in TS was also significantly higher (p < 0.05). Carbohydrate-active enzymes (CAZy) analysis indicated that the abundance of Glycosyltransferases (GTs) and Carbohydrate-Binding Modules (CBMs) in the rumen of TS were significantly upregulated (p < 0.05), while HS was rich in various Glycoside Hydrolases (GHs). Comprehensive Antibiotic Resistance Database (CARD) analysis revealed that more than 60% of the Antibiotic Resistance Genes (ARGs) in the rumen of HS were present at higher levels than those in TS. Metabolomics identified a large number of differential metabolites, among which metabolites such as 2E,6Z,8Z,12E-hexadecatetraenoic acid, Leukotriene F4, and Tenurin were significantly upregulated in the rumen of TS. Correlation analysis showed that rumen microbial flora and their metabolites jointly act to regulate rumen ARGs. Specifically, microorganisms including Firmicutes and Succiniclasticum had a significantly positive correlation with ARGs such as rpoB2 (p < 0.05), while differential metabolites like endomorphin-1 and Purothionin AII exhibited a significantly negative correlation with ARGs such as rpoB2 (p < 0.05). Therefore, compared with HS, the synergistic effect of the rumen microbial flora, their metabolites, and the resistome in TS is an important characteristic and strategy for their adaptation to the hypoxic environment of the QTP, and also contributes to the formation of their unique rumen resistome. Despite being reared in the same plateau environment, the rumen microbiome of HS still retains low-altitude characteristics, which are manifested as high GHs activity and high ARGs abundance. Full article
(This article belongs to the Section Veterinary Microbiology)
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32 pages, 3311 KB  
Article
Preliminary Study on the Mechanism of the Influence of Saline Oat Pasture on Muscle Metabolism and Meat Quality of Tibetan Sheep
by Xiaoming Xin, Lijuan Han, Shengzhen Hou, Linsheng Gui, Zhenzhen Yuan, Shengnan Sun, Zhiyou Wang, Baochun Yang and Chao Yang
Foods 2025, 14(17), 3044; https://doi.org/10.3390/foods14173044 - 29 Aug 2025
Viewed by 385
Abstract
This study aimed to examine the effects of oats cultivated in saline and non-saline environments on the meat quality and muscle metabolism of Qinghai Tibetan sheep. First, targeted and untargeted metabolomics were used to examine oat quality and metabolites. Second, sheep muscle quality [...] Read more.
This study aimed to examine the effects of oats cultivated in saline and non-saline environments on the meat quality and muscle metabolism of Qinghai Tibetan sheep. First, targeted and untargeted metabolomics were used to examine oat quality and metabolites. Second, sheep muscle quality and metabolites were analyzed. Finally, a combined examination of the quality of the oats and their metabolites, as well as that of the muscles, was compared with saline oats. This study hypothesizes that, compared with non-saline environments, soil salinization can improve the nutritional quality of oats, thereby enhancing the meat quality and muscle metabolism of Qinghai Tibetan sheep. Saline-grown oats were shown to have higher levels of crude protein, crude fat, free amino acids, and simple sugar. The meat quality of the sheep fed on saline oats was higher due to free amino acid and carbohydrate metabolism, resulting in improved texture, color, water-holding capacity, and cooked meat percentage, with lower steaming loss. The findings of this study confirm the hypothesis that salinization improves Tibetan sheep meat quality by optimizing oat composition, providing a reference for agricultural and animal husbandry production in saline areas. Full article
(This article belongs to the Special Issue Feeding and Processing Affect Meat Quality and Sensory Evaluation)
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13 pages, 2361 KB  
Article
Grazing-Induced Changes in circRNAs, miRNAs and mRNAs Expression in Tibetan Sheep Biceps Femoris
by Xiong Ma, Shaobin Li, Zhanzhao Chen, Zhaohua He, Jianming Ren, Shiyu Tao, Lan Zhang and Pengfei Zhao
Biology 2025, 14(9), 1143; https://doi.org/10.3390/biology14091143 - 29 Aug 2025
Viewed by 284
Abstract
The present study is aimed at investigating the effects of grazing on the meat quality of Tibetan sheep, as well as the associated molecular mechanisms. A total of ten Tibetan sheep were utilized and equally allocated into two groups: grazing and pen-feeding. To [...] Read more.
The present study is aimed at investigating the effects of grazing on the meat quality of Tibetan sheep, as well as the associated molecular mechanisms. A total of ten Tibetan sheep were utilized and equally allocated into two groups: grazing and pen-feeding. To assess the intramuscular fat (IMF) content, Soxhlet extraction was performed on the biceps femoris muscle. Additionally, transcriptome sequencing was carried out to evaluate the expression profiles of RNAs, facilitating the construction of a ceRNA regulatory network. The results demonstrated that the IMF content in the grazing group was significantly higher compared to the pen-feeding group, implying that grazing might foster the formation of Type I muscle fibers, thereby enhancing meat quality. Moreover, the expression levels of circRNAs, such as novel_circ_001331, novel_circ_012918, novel_circ_029843, and novel_circ_059962, were markedly up-regulated in the grazing group. These circRNAs may alleviate the inhibitory effects on genes like COL8A1, MYLK3, and NOX4 by interacting with miR-381-y, miR-7144-x, miR-16-z, miR-8159-x, novel-m0040-3p, novel-m0092-5p, and oar-miR-329a-3p. These circRNAs and miRNAs are predominantly involved in the MAPK, Wnt, and VEGF signaling pathways and could be implicated in biological processes such as muscle fiber type switching and energy metabolism. This research offers valuable insights for improving the meat quality of Tibetan sheep and provides a foundation for exploring the role of circRNA and miRNA in the regulation of meat quality under grazing conditions. Full article
(This article belongs to the Special Issue Bioinformatics in RNA Modifications and Non-Coding RNAs)
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14 pages, 1365 KB  
Article
Molecular Genetic Basis of Reproductive Fitness in Tibetan Sheep on the Qinghai-Tibet Plateau
by Wangshan Zheng, Siyu Ge, Zehui Zhang, Ying Li, Yuxing Li, Yan Leng, Yiming Wang, Xiaohu Kang and Xinrong Wang
Genes 2025, 16(8), 909; https://doi.org/10.3390/genes16080909 - 29 Jul 2025
Viewed by 422
Abstract
Background: Complete environmental adaptation requires both survival and reproductive success. The hypoxic Qinghai-Tibet Plateau (>3000 m) challenges reproduction in indigenous species. Tibetan sheep, a key plateau-adapted breed, possess remarkable hypoxic tolerance, yet the genetic basis of their reproductive success remains poorly understood. [...] Read more.
Background: Complete environmental adaptation requires both survival and reproductive success. The hypoxic Qinghai-Tibet Plateau (>3000 m) challenges reproduction in indigenous species. Tibetan sheep, a key plateau-adapted breed, possess remarkable hypoxic tolerance, yet the genetic basis of their reproductive success remains poorly understood. Methods: We integrated transcriptomic and genomic data from Tibetan sheep and two lowland breeds (Small-tailed Han sheep and Hu sheep) to identify Tibetan sheep reproduction-associated genes (TSRGs). Results: We identified 165 TSRGs: four genes were differentially expressed (DEGs) versus Small-tailed Han sheep, 77 DEGs versus Hu sheep were found, and 73 genes were annotated in reproductive pathways. Functional analyses revealed enrichment for spermatogenesis, embryonic development, and transcriptional regulation. Notably, three top-ranked selection signals (VEPH1, HBB, and MEIKIN) showed differential expression. Murine Gene Informatics (MGI) confirmed that knockout orthologs exhibit significant phenotypes including male infertility, abnormal meiosis (male/female), oligozoospermia, and reduced neonatal weight. Conclusions: Tibetan sheep utilize an evolved suite of genes underpinning gametogenesis and embryogenesis under chronic hypoxia, ensuring high reproductive fitness—a vital component of their adaptation to plateaus. These genes provide valuable genetic markers for the selection, breeding, and conservation of Tibetan sheep as a critical genetic resource. Full article
(This article belongs to the Section Animal Genetics and Genomics)
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26 pages, 3663 KB  
Article
Influence of Cooking Methods on Flavor Parameters and Sensory Quality of Tibetan Sheep Meat Examined Using an Electronic Nose, an Electronic Tongue, GC–IMS, and GC–MS
by Shipeng Ge, Lijuan Han, Shengzhen Hou, Zhenzhen Yuan, Linsheng Gui, Shengnan Sun, Chao Yang, Zhiyou Wang and Baochun Yang
Foods 2025, 14(13), 2181; https://doi.org/10.3390/foods14132181 - 22 Jun 2025
Cited by 2 | Viewed by 672
Abstract
To explore the influence of cooking methods on the flavor parameters of Tibetan sheep, various techniques such as atmospheric-pressure (AP), high-pressure (HP), atmospheric-pressure high-pressure (APHP), and high-pressure atmospheric-pressure (HPAP) cooking were tested. The results indicated that APHP and HP cooking yielded the best [...] Read more.
To explore the influence of cooking methods on the flavor parameters of Tibetan sheep, various techniques such as atmospheric-pressure (AP), high-pressure (HP), atmospheric-pressure high-pressure (APHP), and high-pressure atmospheric-pressure (HPAP) cooking were tested. The results indicated that APHP and HP cooking yielded the best sensory qualities, accounting for 26.15% and 25.51%, respectively. The HP group had the highest amino acid content at 34%, enhancing the meat’s sweet taste due to alanine, glycine, arginine, and methionine. Among 40 detected fatty acids, the order of saturated fatty acid (SFA), monounsaturated fatty acid (MUFA), polyunsaturated fatty acid (PUFA), and n-6/n-3 content was AP > APHP > HPAP > HP (p < 0.05). An electronic tongue and nose identified aroma components across the four cooking methods. Similarities in aroma were observed among the samples after cooking, while significant differences were found in the aroma components between the AP group and the other three cooking methods (p < 0.05). The gas chromatography–ion mobility spectrometry (GC–IMS) and gas chromatography–mass spectrometry (GC–MS) analyses of the meat in the four groups indicated that there were significant differences in volatile compounds among meat cooked with different methods (p < 0.05), with 56 and 365 flavor compounds detected by the two analytical techniques, respectively. Moreover, the GC–MS results indicated that the flavor substance content in the HP group accounted for 30.80% among these four sample groups. This comprehensive analysis showed that high-pressure steaming could significantly improve the flavor quality of Tibetan sheep, providing a theoretical basis and empirical reference for the optimization of pre-treatment conditions and the processing of Tibetan sheep. Full article
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18 pages, 3022 KB  
Article
Interaction Between Rumen Microbiota and Epithelial Mitochondrial Dynamics in Tibetan Sheep: Elucidating the Mechanism of Rumen Epithelial Energy Metabolism
by Ying Xu, Yuzhu Sha, Xiaowei Chen, Qianling Chen, Xiu Liu, Yanyu He, Wei Huang, Yapeng He and Xu Gao
BioTech 2025, 14(2), 43; https://doi.org/10.3390/biotech14020043 - 5 Jun 2025
Viewed by 1014
Abstract
Investigating the functional interactions between rumen microbial fermentation and epithelial mitochondrial dynamics/energy metabolism in Tibetan sheep at different altitudes, this study examined ultrastructural changes in rumen epithelial tissues, expression levels of mitochondrial dynamics-related genes (fusion: Mfn1, Mfn2, OPA1, Mic60; [...] Read more.
Investigating the functional interactions between rumen microbial fermentation and epithelial mitochondrial dynamics/energy metabolism in Tibetan sheep at different altitudes, this study examined ultrastructural changes in rumen epithelial tissues, expression levels of mitochondrial dynamics-related genes (fusion: Mfn1, Mfn2, OPA1, Mic60; fission: Drp1, Fis1, MFF), and ketogenesis pathway genes (HMGS2, HMGCL) in Tibetan sheep raised at three altitudes (TS 2500m, TS 3500m, TS 4500m). Correlation analysis was performed between rumen microbiota/metabolites and mitochondrial energy metabolism. Results: Ultrastructural variations were observed across altitudes. With increasing altitude, keratinized layer became more compact; desmosome connections between granular layer cells increased; mitochondrial quantity and distribution in spinous and basal layers increased. Mitochondrial dynamics regulation: Fission genes (FIS1, DRP1, MFF) showed significantly higher expression at TS 4500m (p < 0.01); fusion genes (Mfn1, OPA1) exhibited altitude-dependent upregulation. Energy metabolism markers: Pyruvate (PA) decreased significantly at TS 3500m/TS 4500m (p < 0.01); citrate (CA) increased with altitude; NAD+ peaked at TS 3500m but decreased significantly at TS 4500m (p < 0.01); Complex II (SDH) and Complex IV (CO) activities decreased at TS 4500m (p < 0.01). Ketogenesis pathway: β-hydroxybutyrate increased significantly with altitude (p < 0.01); acetoacetate peaked at TS 2500 m/TS 4500 m; HMGCS2 expression exceeded HMGCL, showing altitude-dependent upregulation at TS 4500m (p < 0.01). Microbiome–metabolism correlations: Butyrivibrio_2 and Fibrobacter negatively correlated with Mic60 (p < 0.01); Ruminococcaceae_NK4A214_Group positively correlated with Mfn1/OPA1 (p < 0.05); WGCNA identified 17 metabolite modules, with MEturquoise module positively correlated with DRP1/Mfn2/MFF (p < 0.05). Conclusion: Altitude-induced ultrastructural adaptations in rumen epithelium correlate with mitochondrial dynamics stability and ketogenesis upregulation. Mitochondrial fission predominates at extreme altitudes, while microbiota–metabolite interactions suggest compensatory energy regulation mechanisms. Full article
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19 pages, 2658 KB  
Article
A Study on the Differences in Rumen Microbiota–Liver Gluconeogenesis–Mitochondrial Interaction Between Tibetan Sheep and Hu Sheep in the Qinghai–Tibet Plateau
by Qianling Chen, Yuzhu Sha, Xiu Liu, Min Gao, Xiaowei Chen, Wenxin Yang, Wei Huang, Jiqing Wang, Yapeng He, Xu Gao and Yanyu He
Animals 2025, 15(11), 1603; https://doi.org/10.3390/ani15111603 - 30 May 2025
Viewed by 738
Abstract
As high-quality sheep germplasm resources in China, Hu sheep are characterized by fast growth and development, high fecundity, and tolerance to drought and cold. Tibetan sheep, adapted to high-altitude environments, have developed strong environmental adaptability. To explore the differences in the interaction among [...] Read more.
As high-quality sheep germplasm resources in China, Hu sheep are characterized by fast growth and development, high fecundity, and tolerance to drought and cold. Tibetan sheep, adapted to high-altitude environments, have developed strong environmental adaptability. To explore the differences in the interaction among rumen microbial flora, hepatic gluconeogenesis, and mitochondrial function between Tibetan sheep and Hu sheep in the Qinghai–Tibet Plateau, this study systematically compared and analyzed the rumen flora density, key enzyme activities related to hepatic gluconeogenesis and mitochondrial function, and the expression levels of related genes in Tibetan sheep and Hu sheep under identical feeding management conditions, followed by correlation analysis. The results showed that Hu sheep had significantly higher densities of Ruminobacteramylophilus (Ram) and Fibrobacter succinogenes (Fs) associated with starch and protein degradation (p < 0.01). The expression levels of Forkhead box O1 (FOXO1), pyruvate carboxylase (PC) activity, and adenosine triphosphate (ATP) content were also significantly higher than those in Tibetan sheep (p < 0.01). In contrast, Tibetan sheep had higher densities of Butyrivibrio fibrisolvens (Bf), Ruminococcus albus (Ra), Ruminococcus flavefaciens (Rf), etc., related to cellulose degradation (p < 0.01). The gluconeogenesis-related genes, Glucose-6-phosphatase catalytic subunit 1 (G6PC1) and phosphoenolpyruvate carboxykinase1 (PCK1), and the activities of phosphoenolpyruvate carboxykinase (PEPCK) and fructose-1,6-bisphosphatase (FBPase) were significantly higher in Tibetan sheep than in Hu sheep (p < 0.01). Mitochondrial function-related genes Mitofusin-1 (Mfn1), Mitofusin-2 (Mfn2), subunit 6 of ATP synthase (ATP6), cytochrome b (Cytb), etc., also showed significantly higher expression in Tibetan sheep (p < 0.01). While no significant differences were observed in the contents of citric acid (CA), pyruvic acid (PA), glucose (Glu), etc. (p > 0.05). Correlation analysis indicated that rumen flora was associated with the key enzyme activities and gene expressions of hepatic gluconeogenesis and mitochondrial function to varying degrees. In summary, Tibetan sheep exhibit strong fiber degradation capacity, the efficient utilization of gluconeogenic intermediates, and mitochondrial oxidative phosphorylation (OXPHOS) ability, forming adaptive strategies for high-altitude environments. By contrast, Hu sheep show efficient protein and starch degradation capacity, thereby enhancing the supply of gluconeogenic precursors. It is indicated that when introducing Hu sheep to high-altitude areas, dietary intervention can be used to regulate rumen microorganisms, such as increasing fiber-decomposing bacteria or enhancing mitochondrial oxidative capacity, to counteract metabolic limitations induced by hypoxia. Full article
(This article belongs to the Section Animal Physiology)
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26 pages, 5290 KB  
Article
Introduction Experiment of Annual Oat Forage and Screening of Microbial Fertilizer in Qinghai–Tibet Plateau
by Liangyu Lyu, Pei Gao, Juncheng He, Cuo Lu and Jianjun Shi
Sustainability 2025, 17(10), 4444; https://doi.org/10.3390/su17104444 - 13 May 2025
Viewed by 528
Abstract
We conducted experiments to screen annual forage oats suitable for cultivation at high altitude (4200 m), and to establish a green fertilization system with microbial fertilizers and manure organic fertilizers in order to provide technical support for a sustainable forage production system in [...] Read more.
We conducted experiments to screen annual forage oats suitable for cultivation at high altitude (4200 m), and to establish a green fertilization system with microbial fertilizers and manure organic fertilizers in order to provide technical support for a sustainable forage production system in the pastoral areas of the Qinghai–Tibetan Plateau. The experiment followed the principle of randomized block design to systematically analyze the agronomic traits, yield quality, and soil health of oats among different treatments, and to screen for adaptable oat varieties and the optimal application rate of microbial fertilizers with organic manure. The results showed that the following: (1) The results of the oat variety screening test showed that the yield and quality indexes of ‘Qing Yin No. 2’ and ‘Bai Yan No. 7’ introduced in high altitude areas were higher than those of other oat varieties, with high membership function values of 0.69 and 0.65, respectively. (2) The combined application of microbial fertilizer and organic fertilizer showed that the combined application could significantly improve the growth and photosynthetic characteristics of ‘Bai Yan No. 7’. The combination of the two also improved the yield quality of ‘Bai Yan No. 7’; the hay yield with the BHC3 treatment was 8508.00 kg·hm−2, significantly higher than the BCK treatment (p < 0.05). Regarding soil fertility, under the BHC3 treatment, compared with the BCK, soil nutrient contents and soil enzyme activities were also significantly improved (p < 0.05). At the same time, the combination of the two treatments also significantly improved the growth and photosynthetic characteristics of ‘Qing Yin No. 2’. The combination of the two also improved the yield quality of ‘Qing Yin No. 2’, and the hay yield with the QDY4 treatment was 8707.67 kg·hm−2, which was significantly increased by 25.37%, compared with that of QCK. Regarding soil fertility, under the QHC2 treatment, compared with the QCK treatment, soil nutrient contents and soil enzyme activities were also significantly improved. To sum up, ‘Qing Yin No. 2’ and ‘Bai Yan No. 7’ can better adapt to the ecological environment in high altitude areas, and are suitable for planting in areas with an altitude of 4200 m. The combined application of Trichoderma harzianum, Bacillus licheniformis, and organic fertilizer can improve the yield, nutritional quality, and soil fertility of ‘Qing Yin No. 2’ and ‘Bai Yan No. 7’. The best treatment for ‘Qing Yin No. 2’ is QDY4, that is, 15.00 kg of Bacillus licheniformis is applied per hectare, and 18,000 kg of cattle and sheep manure organic fertilizer is applied per hectare. The best treatment for ‘Bai Yan No. 7’ is BHC3, that is, 6.00 kg of Trichoderma harzianum is applied per hectare, and 18,000 kg of cattle and sheep manure organic fertilizer is applied per hectare. With the above treatment, the forage grass grows best, the soil nutrient content in the forage grass field is the highest, and the input–output ratio is the highest. Full article
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33 pages, 2794 KB  
Article
Soil Bulk Density, Aggregates, Carbon Stabilization, Nutrients and Vegetation Traits as Affected by Manure Gradients Regimes Under Alpine Meadows of Qinghai–Tibetan Plateau Ecosystem
by Mahran Sadiq, Nasir Rahim, Majid Mahmood Tahir, Aqila Shaheen, Fu Ran, Guoxiang Chen and Xiaoming Bai
Plants 2025, 14(10), 1442; https://doi.org/10.3390/plants14101442 - 12 May 2025
Cited by 1 | Viewed by 594
Abstract
Climate change and overgrazing significantly constrain the sustainability of meadow land and vegetation in the livestock industry on the Tibetan–Plateau ecosystem. In context of climate change mitigation, grassland soil C sequestration and forage sustainability, it is important to understand how manure regimes influence [...] Read more.
Climate change and overgrazing significantly constrain the sustainability of meadow land and vegetation in the livestock industry on the Tibetan–Plateau ecosystem. In context of climate change mitigation, grassland soil C sequestration and forage sustainability, it is important to understand how manure regimes influence SOC stability, grassland soil, forage structure and nutritional quality. However, the responses of SOC fractions, soil and forage structure and quality to the influence of manure gradient practices remain unclear, particularly at Tianzhu belt, and require further investigation. A field study was undertaken to evaluate the soil bulk density, aggregate fractions and dynamics in SOC concentration, permanganate oxidizable SOC fractions, SOC stabilization and soil nutrients at the soil aggregate level under manure gradient practices. Moreover, the forage biodiversity, aboveground biomass and nutritional quality of alpine meadow plant communities were also explored. Four treatments, i.e., control (CK), sole sheep manure (SM), cow dung alone (CD) and a mixture of sheep manure and cow dung (SMCD) under five input rates, i.e., 0.54, 1.08, 1.62, 2.16 and 2.70 kg m−2, were employed under randomized complete block design with four replications. Our analysis confirmed the maximum soil bulk density (BD) (0.80 ± 0.05 g cm−3) and micro-aggregate fraction (45.27 ± 0.77%) under CK, whilst the maximum macro-aggregate fraction (40.12 ± 0.54%) was documented under 2.70 kg m−2 of SMCD. The SOC, very-labile C fraction (Cfrac1), labile C fraction (Cfrac2) and non-labile/recalcitrant C fraction (Cfrac4) increased with manure input levels, being the highest in 2.16 kg m−2 and 2.70 kg m−2 applications of sole SM and the integration of 50% SM and 50% CD (SMCD), whereas the less-labile fraction (Cfrac3) was highest under CK across aggregate fractions. However, manures under varying gradients improved SOC pools and stabilization for both macro- and micro-aggregates. A negative response of the carbon management index (CMI) in macro-aggregates was observed, whilst CMI in the micro-aggregate fraction depicted a positive response to manure addition with input rates, being the maximum under sole SM addition averaged across gradients. Higher SOC pools and CMI under the SM, CD and SMCD might be owing to the higher level of soil organic matter inputs under higher doses of manures. Moreover, the highest accumulation of soil nutrients,, for instance, TN, AN, TP, AP, TK, AK, DTPA extractable Zn, Cu, Fe and Mn, was recorded in SM, CD and SMCD under varying gradients over CK at both aggregate fractions. More nutrient accumulation was found in macro-aggregates over micro-aggregates, which might be credited to the physical protection of macro-aggregates. Overall, manure addition under varying input rates improved the plant community structure and enhanced meadow yield, plant community diversity and nutritional quality more than CK. Therefore, alpine meadows should be managed sustainably via the adoption of sole SM practice under a 2.16 kg m−2 input rate for the ecological utilization of the meadow ecosystem. The results of this study deliver an innovative perspective in understanding the response of alpine meadows’ SOC pools, SOC stabilization and nutrients at the aggregate level, as well as vegetation structure, productivity and forage nutritional quality to manure input rate practices. Moreover, this research offers valuable information for ensuring climate change mitigation and the clean production of alpine meadows in the Qinghai–Tibetan Plateau area of China. Full article
(This article belongs to the Section Plant Ecology)
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12 pages, 8383 KB  
Article
Prevalence and Molecular Characterization of Parasitic Lice in Tibetan Yaks, Pigs and Sheep
by Wanmei Luo, Xialing Zhao, Dengyun Wang, Bin Shi, Shah Nawaz, Qingxia Wu and Wenqiang Tang
Life 2025, 15(3), 444; https://doi.org/10.3390/life15030444 - 12 Mar 2025
Viewed by 827
Abstract
The infestation of ectoparasites poses a severe problem in animal breeding, severely affecting animal health and causing substantial economic losses. However, limited information is available regarding lice infestations in plateau livestock. To address this, we collected and examined lice samples from Tibetan yaks, [...] Read more.
The infestation of ectoparasites poses a severe problem in animal breeding, severely affecting animal health and causing substantial economic losses. However, limited information is available regarding lice infestations in plateau livestock. To address this, we collected and examined lice samples from Tibetan yaks, pigs and sheep, amplifying the rrnS and cox1 genes for evolutionary analysis. The results revealed that the prevalence of lice was 51.3% (95% CI: 44.0–58.6%) in yaks, Tibetan sheep and Tibetan pigs, with regional prevalence ranging from 7.7% to 67.5%. Morphometric analysis showed that female lice were bigger than male lice. In Tibetan pigs, females exhibited a prominent longer body length (p < 0.05), belly length (p < 0.01) and body length to body width ratio (p < 0.05). In yaks, females had longer body length (p < 0.01) and body width (p < 0.05). For Tibetan sheep, female lice had larger body length (p < 0.001), body width (p < 0.001), head length (p < 0.05) and belly length (p < 0.05). Additionally, molecular identification revealed that lice infesting wild and domestic yaks were Linognathus vituli with 96.59–98.78% (wild yaks) and 96.33–98.71% (yaks) similarity to the OL677823.1 isolate. Lice infesting Tibetan sheep were identified as Linognathus africanus, showing 99.02–99.76% similarity to the OP948898.1 isolate. Lice from Tibetan pigs were identified as Haematopinus apri, with 96.38–98.31% similarity to the ON000922.1 isolate. Moreover, cox1 gene analysis of lice from Tibetan pigs showed 96.97–97.72% similarity to the KC814616.1 isolate. It is concluded that these findings could provide valuable insights into the prevention and control of lice-related diseases in plateau animals, enhancing animal health and mitigating economic losses. Full article
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25 pages, 3832 KB  
Article
The Changes in Grassland Animal Husbandry and Herdsmen’s Life in the Qinghai Pastoral Area of China Based on the Perspective of Changes in the Grassland Property Rights System
by Yujiao Gou, Lizhuang Hao, Yayu Huang, Xinyan Jin, Airu Zhang and Hongbo Ma
Sustainability 2025, 17(3), 1262; https://doi.org/10.3390/su17031262 - 4 Feb 2025
Viewed by 1244
Abstract
Based on the historical background of the changes made to the grassland property rights system, the first part of this study restores the changes in property rights systems in six major autonomous counties of grassland animal husbandry production in Qinghai region, while the [...] Read more.
Based on the historical background of the changes made to the grassland property rights system, the first part of this study restores the changes in property rights systems in six major autonomous counties of grassland animal husbandry production in Qinghai region, while the second part qualitatively analyzes the changes in grassland animal husbandry operations and herdsmen’s life under the changes in property rights. The results show that, with the reform of the property rights system, the range of livestock grazing has changed from large-scale nomadic grazing to regional rotational grazing. The herds are mainly yaks and Tibetan sheep, accounting for more than 90%, with the proportion of Tibetan sheep being higher than that of yaks. The numbers of total livestock and those on the market first rose and then declined, showing a dynamic balance in recent 10 years, while the number of breeding female animals has increased year by year. Artificial grass planting has gradually become popularized in pastoral areas. The time span of livestock supplementary feeding has increased and is more scientific, and the output value of animal husbandry has increased year by year, showing a strong peak associated with intensification. The proportion of the population engaged in animal husbandry has decreased gradually with increasing population in the region. The income sources of herdsmen have become more and more diversified and are increasing year by year, and the Engel coefficient presents a downward trend. The human environment in pastoral areas has improved. Based on the above analysis, suggestions for the sustainable and high-quality production of animal husbandry under the current grassland property rights system are put forward, as well as for the construction of green organic agricultural and livestock product export land in Qinghai Province. Full article
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19 pages, 3999 KB  
Article
Ovine LncRSFD1 Mined from RNA-Seq: Identification, Expression Profile, Promotion of Preadipocyte Differentiation, Promoter Activity, and Its Polymorphisms Related to Phenotypic Traits
by Hongwei Xu, Yunyun Luo, Mengyang Zhang, Chuanying Pan, Xianyong Lan and Juanshan Zheng
Animals 2024, 14(24), 3631; https://doi.org/10.3390/ani14243631 - 16 Dec 2024
Viewed by 881
Abstract
Tail fat is essential for sheep survival in extreme environments, yet its significance is often overlooked, leading to the decline of fat-tailed breeds. This study identified a novel lncRNA, lncRSFD1 (TCONS_00054953), through transcriptome sequencing, showing differential expression in the tail adipose [...] Read more.
Tail fat is essential for sheep survival in extreme environments, yet its significance is often overlooked, leading to the decline of fat-tailed breeds. This study identified a novel lncRNA, lncRSFD1 (TCONS_00054953), through transcriptome sequencing, showing differential expression in the tail adipose tissues of Lanzhou Fat-Tailed (LFT) sheep and Tibetan (TS) sheep. Highly expressed in adipose tissues, lncRSFD1 inhibits preadipocyte proliferation and promotes 3T3-L1 differentiation, suggesting its role in regulating fat deposition. Located in both the cytoplasm and nucleus, lncRSFD1 targets the neighboring gene PDE4DIP and may function as a molecular sponge for conserved miRNAs, including oar-miR-30a-3p, oar-miR-329b-5p, and oar-miR-431, which are known to influence fat and muscle-related physiological processes. Moreover, the core promoter of lncRSFD1 (−2607 bp to −1776 bp) harbors four SNPs (g.-2429G>A, g.-2030T>C, g.-2016C>T, g.-2015G>A) significantly associated with growth traits such as body height in Guiqian Semi-Fine Wool (GSFW) sheep. These findings suggest lncRSFD1 plays a key role in fat deposition and growth regulation, offering new insights into the molecular mechanisms of lncRNAs in sheep. It provides a potential target for genetic improvement and molecular breeding to enhance fat deposition and adaptability in sheep breeds. Full article
(This article belongs to the Section Animal Genetics and Genomics)
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18 pages, 8923 KB  
Article
Survival Risk Analysis for Four Endemic Ungulates on Grasslands of the Tibetan Plateau Based on the Grazing Pressure Index
by Lingyan Yan, Lingqiao Kong, Zhiyun Ouyang, Jinming Hu and Li Zhang
Remote Sens. 2024, 16(23), 4589; https://doi.org/10.3390/rs16234589 - 6 Dec 2024
Cited by 2 | Viewed by 879
Abstract
Ungulates are essential for maintaining the health of grassland ecosystems on the Tibetan plateau. Increased livestock grazing has caused competition for food resources, threatening ungulates’ survival. The survival risk of food resources for ungulates can be quantified by the grazing pressure index, which [...] Read more.
Ungulates are essential for maintaining the health of grassland ecosystems on the Tibetan plateau. Increased livestock grazing has caused competition for food resources, threatening ungulates’ survival. The survival risk of food resources for ungulates can be quantified by the grazing pressure index, which requires accurate grassland carrying capacity. Previous research on the grazing pressure index has rarely taken into account the influence of wild ungulates, mainly due to the lack of precise spatial data on their quantity. In this study, we conducted field investigations to construct high-resolution spatial distributions for the four endemic ungulates on the Tibetan plateau. By factoring in the grazing consumption of these ungulates, we recalculated the grassland carrying capacity to obtain the grazing pressure index, which allowed us to assess the survival risks for each species. The results show: (1) Quantity estimates for Tibetan antelope (Pantholops hodgsonii), Tibetan wild donkey (Equus kiang), Tibetan gazelle (Procapra picticaudata), and wild yak (Bos mutus) of the Tibetan plateau are 24.57 × 104, 17.93 × 104, 7.16 × 104, and 1.88 × 104, respectively; they mainly distributed in the northern and western regions of the Tibetan plateau. (2) The grassland carrying capacity of the Tibetan plateau is 69.98 million sheep units, with ungulate grazing accounting for 5% of forage utilization. Alpine meadow and alpine steppe exhibit the highest grassland carrying capacity. (3) The grazing pressure index on the Tibetan plateau grasslands is 2.23, indicating a heightened grazing pressure in the southern and eastern regions. (4) The habitat survival risk analysis indicates that the high survival risk (the grazing pressure index exceeds 1.2) areas for the four ungulate species account for the following proportions of their total habitat areas: Tibetan wild donkeys (49.76%), Tibetan gazelles (47.00%), Tibetan antelopes (40.76%), and wild yaks (34.83%). These high-risk areas are primarily located within alpine meadow and temperate desert steppe. This study provides a quantitative assessment of survival risks for these four ungulate species on the Tibetan plateau grasslands and serves as a valuable reference for ungulate conservation and grassland ecosystem management. Full article
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24 pages, 6439 KB  
Article
Effect of Oat Hay as a Substitute for Alfalfa Hay on the Gut Microbiome and Metabolites of Yak Calves
by Yingchao Gu, Lele An, Yanan Zhou, Guoliang Xue, Yang Jiao, Deyu Yang, Shujie Liu and Zhanhong Cui
Animals 2024, 14(22), 3329; https://doi.org/10.3390/ani14223329 - 19 Nov 2024
Viewed by 1087
Abstract
To evaluate the impact of different roughages on the intestinal microbiota of yak calves, we fed them oat hay in substitution of alfalfa hay, in addition to milk replacer and starter powder. Twenty-one 45-day-old male yak calves were selected and randomly assigned to [...] Read more.
To evaluate the impact of different roughages on the intestinal microbiota of yak calves, we fed them oat hay in substitution of alfalfa hay, in addition to milk replacer and starter powder. Twenty-one 45-day-old male yak calves were selected and randomly assigned to three groups: the milk replacer + starter + alfalfa hay group (AH), the milk replacer + starter + oat hay group (OH), and the milk replacer + starter + mixed hay group (AO), in which the alfalfa hay and oat hay were administered in a 1:1 ratio. All calves in the three groups were fed the same milk replacer and an equivalent amount of dry matter. The formal experiment commenced after a 21-day pre-test period and lasted for 120 days. Following the experiment, the contents of the jejunum and colon were collected to investigate the intestinal microbiota and metabolites using 16S rRNA sequencing and LC-MS metabolomics. The result showed that the AO group had greater final body weights overall than the AH group and OH group (p < 0.05). The AH group and OH group had considerably greater feed-to-gain ratios than the AO group (p < 0.05). At the phylum level, the OH group exhibited an increased relative abundance of Bacteroidota and Spirochaetota in the jejunum (p < 0.05). The relative abundance of Actinobacteriota in the colon was increased in the AO group (p < 0.05). At the genus level, the AO group exhibited a decreased abundance of Clostridium sensu_stricto_1 (p < 0.05), and the OH group showed an increased abundance UCG-005 and Alistipes in the jejunum. There were many differential metabolites in the OH group and AO group compared to the AH group, and the different metabolites of the OH group were associated with the metabolic pathways of the nervous system, sensory system, amino acid metabolism, and lipid metabolism in the jejunum and with lipid metabolism, amino acid metabolism, and the nervous system in the colon. In the AO group, these metabolites were associated with the digestive system and the translation and metabolism of cofactors in the jejunum and with the metabolism of cofactors and vitamins in the colon. In summary, it is feasible to replace alfalfa hay with oat hay based on milk replacer and starter. The combination of the two forages enhanced nutrient absorption, improved immune function, maintained the internal homeostasis of yak calves, and was more beneficial to their growth and development. Full article
(This article belongs to the Section Animal Nutrition)
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