Search Results (8,458)

Soybean is a vital crop supporting global food, feed, and biofuel production. Soybean yields have surged, with record yields reaching 14,678 kg/ha⁻¹, though average farm yields remain stagnant at 2770–2790 kg ha⁻¹. The persistent yield gaps leave 44% of potential production unrealized due to climate change, threatening food security. To meet future caloric demands, which are projected to rise by 46.8% by 2050, soybean breeding must prioritize climate-resilient, high-yielding varieties with minimal ecological footprints. In this comprehensive and in-depth review, we synthesized existing literature and Google Patents and reviewed the multifaceted impacts of climate-change driven eCO₂ and stresses (heat, drought, flooding, salinity, and pathogens), revealing non-linear interactions where eCO₂ may not compensate yield losses under combined stresses. We then highlight key strategies for soybean breeding under climate-change scenario. To this regard, we provide a detailed trait-by-trait breeding roadmap covering seed number, seed size, seed weight, protein-oil balance and their metabolic trade-offs, above and below ground plant architecture, nitrogen fixation and nodulation dynamics, root system architecture, water use efficiency, canopy architecture, flowering time regulation, early maturity etc., in light of specific genes and validated strategies. We explicitly discuss the novel strategies including deeper understanding of traits, abiotic stress physiology, changing pathogen dynamics, phenomics, (multi-)omics, machine learning, and modern biotechnological techniques for developing future soybean varieties. We provide a future roadmap prioritizing specific actions, including engineering climate-resilient ideotypes through gene stacking, optimizing nitrogen fixation and nutrition under stresses leveraging omics data, pan-genome, wild soybean, speeding breeding hubs, and participatory farmer-network validation, while redefining the future soybean breeder would be a hybrid orchestrator of data and dirt. This review establishes a foundational framework for translating climate-adaptive morphological, biochemical, physiological, omics, agronomic, phenomics, and biotechnological insights into actionable breeding strategies, thereby guiding policy-driven investment in soybean improvement programs targeting 2050 and beyond. Full article

The homeodomain-leucine zipper (HD-Zip) transcription factor family is conserved in land plants and is critical for regulating growth, development, and stress responses. Flax (Linum usitatissimum L.) is an economically valuable dual-purpose crop valued for its high nutrition and notable drought tolerance; however, its HD-Zip gene family has not been systematically characterized. In this study, a comprehensive genome-wide analysis was performed to identify and characterize the HD-Zip family in flax. A total of 34 LuHD-Zip genes were identified, which were unevenly distributed across 15 chromosomes and exhibited substantial variation in physicochemical properties. The encoded proteins ranged from 200 to 372 amino acids in length, with molecular weights of 22.7–40.3 kDa and theoretical isoelectric points (pI) of 4.49–9.46. All LuHD-Zip proteins were predicted to be hydrophilic and localized to the nucleus. Phylogenetic analysis divided these proteins into two major subfamilies (Group 1 and Group 2), a classification strongly supported by conserved gene structures and motif compositions, implying potential functional redundancy within each group. Gene duplication analysis revealed that segmental duplication events (29 pairs) were the primary drivers of family expansion. Comparative syntenic analysis further indicated that the LuHD-Zip gene family has remained relatively conserved throughout evolution. Promoter cis-element analysis identified multiple regulatory elements associated with hormone signaling and abiotic stress responses, suggesting complex transcriptional control in response to environmental stimuli. Expression profiling via quantitative real-time PCR (qRT-PCR) demonstrated that LuHD-Zip genes exhibit tissue-specific expression patterns and are differentially regulated by various phytohormone treatments and abiotic stresses. This study provides the first genome-wide characterization of the HD-Zip gene family in flax, offering valuable insights into its evolution and potential functions. These findings establish a solid foundation for future functional investigations of the LuHD-Zip gene family. Full article

Despite Morocco’s emergence as the world’s fourth-largest berry exporter, no comprehensive review has evaluated the polyphenol composition, antioxidant properties, and health benefits of raspberries (Rubus idaeus), blackberries (Rubus fruticosus), and blueberries (Vaccinium corymbosum) specifically within the Moroccan cultivation context. This narrative review synthesized evidence from phytochemical analyses, in vitro and in vivo studies, randomized controlled trials (RCTs), meta-analyses, and epidemiological data sourced from PubMed, Scopus, and Web of Science. Blackberries exhibited the highest total polyphenol content (149 μmol GAE/L) and antioxidant capacity, driven primarily by anthocyanin concentration and diversity. Antioxidant mechanisms included free radical scavenging, transition metal chelation, and upregulation of endogenous antioxidant enzymes. Pooled RCT data demonstrated that regular consumption (150–300 g/day) significantly reduced systolic blood pressure (−2.72 mmHg), LDL cholesterol (−0.21 mmol/L), and fasting glucose (−2.70 mg/dL). Additional benefits included neuroprotection via blood-brain barrier crossing and brain-derived neurotrophic factor (BDNF) elevation, prebiotic modulation of Bifidobacterium, Lactobacillus, and Akkermansia populations, and anti-cancer activity via nuclear factor-kappa B (NF-κB) and mitogen-activated protein kinase (MAPK) inhibition. Processing significantly affected bioactive retention: freezing preserved phenolic compounds effectively, while conventional drying reduced anthocyanin content by up to 49%. These findings support the integration of Moroccan-cultivated berries—particularly from the Gharb, Loukkos, and Souss-Massa regions—into evidence-based dietary and functional food strategies. Priority research gaps include bioavailability assessment, dose-response characterization, and cultivar-specific phytochemical profiling under Moroccan agro-climatic conditions. Full article

Peptide deformylase (PDF) belongs to a conserved enzyme family critical for N-terminal methionine excision (NME), an essential protein maturation process in prokaryotes and eukaryotic organelles (chloroplasts, mitochondria). To explore the potential functions of OsPDFs in Oryza sativa, this study employed bioinformatics approaches and experimental validation to systematically identify and analyze the OsPDF gene family. Three OsPDF genes (OsPDF1A, OsPDF1B, OsPDF1B2) were identified in rice. These genes are exclusively distributed on chromosome 1. The biophysical properties of these proteins showed that OsPDF1A and OsPDF1B are alkaline proteins, while OsPDF1B2 is acidic, and all are hydrophilic with moderate thermostability potential. Synteny analysis revealed closer evolutionary relationships between Oryza sativa and the monocot Triticum aestivum than with dicots, reflecting conserved PDF function in gramineous plants. Analysis of cis-acting elements in the 2000 bp upstream region of OsPDF gene promoters revealed numerous elements associated with abiotic stress response and hormone regulation. Furthermore, quantitative real-time PCR (qRT-PCR) data supported these findings, indicating that OsPDF1A and OsPDF1B were upregulated under low-temperature stress, and all three OsPDF genes were transcriptionally activated by heat, salt and UV-B stresses, indicating their active involvement in rice growth, development, and abiotic stress tolerance. In summary, OsPDFs exhibit significant functions in rice’s stress adaptation, growth, and development. This study not only enhances our understanding of the OsPDF gene family’s genomic, evolutionary, and functional characteristics, but also provides new perspectives and foundational data for further exploring their regulatory mechanisms in protein maturation and abiotic stress responses, as well as their potential applications in rice stress tolerance breeding. Full article

Climate change-induced abiotic stress, particularly heat and drought during olive oil accumulation, significantly threatens the productivity and oil quality of olive trees (Olea europaea L.). This study investigated the efficacy of pre-harvest elicitation using the biostimulants harpin and chitosan (both as commercially available products) under summer conditions in Greece, in commercially productive rainfed groves of cv. ‘Megaritiki’. Multivariate analysis (PCA and factor analysis) revealed that pre-harvest application of these elicitors successfully balanced the trade-off between oil yield and quality. Both harpin and chitosan maintained hydrolytic (free acidity—0.25 and 0.29 g oleic acid 100 g⁻¹, respectively, compared to 0.56 g oleic acid 100 g⁻¹ in the control) and primary oxidative markers (peroxides—4.16 and 4.16 meq O₂ kg⁻¹, respectively, compared to 5.20 meq O₂ kg⁻¹ in the control) at exceptionally low levels compared to untreated trees. The treatments induced a distinctive metabolic shift regarding volatile compounds governed by the lipoxygenase (LOX) pathway. Harpin application was strongly associated with complex floral and fruity volatile compounds (2-hexen-1-ol and trans-2-hexenal) and a high α-tocopherol concentration (38.58 mg kg⁻¹ compared to 23.12 mg kg⁻¹ in the control), suggesting an enhanced physiological response in favor of oil quality attributes. Conversely, chitosan elevated the oxidative stability of the oil by increasing total phenol concentration (by almost 97% compared to the control) and prioritizing the accumulation of the stable monounsaturated fatty acids (oleic acid—increased by 12.5% compared to the control) over polyunsaturated ones (linoleic acid), while endowing the oil with desirable “green freshness” aromas (cis-3-hexenal). These results demonstrate that elicitation with harpin and chitosan is a potent tool for sustainably enhancing extra virgin olive oil quality under rainfed conditions in Greece, steering fruit metabolism toward a premium nutraceutical and sensory profile and enhancing the functional properties of the oil (phenol content, antioxidant capacity, monounsaturated fatty acids, α-tocopherol and squalene). Full article

Microbial bio-inoculants have been proposed as management tools to enhance crop performance under variable environmental conditions; however, their effectiveness is often influenced by site-specific factors. This study evaluated the effects of bio-inoculation on seed germination and seedling vigor of pea under osmotic stress induced by polyethylene glycol (PEG 6000), and its interaction with two fertilization levels (75% and 100% of the recommended dose) under field conditions in the Amazonas region of Peru. Under laboratory conditions, germination percentage remained high across all treatments (93.3–100%) and was not affected by bio-inoculation or osmotic potential; however, osmotic stress altered germination dynamics, increasing mean germination time from 1.85–2.09 days at 0 MPa to 2.26–2.43 days at −0.8 MPa, while germination synchrony and seedling vigor decreased as stress increased. The seedling vigor index reached maximum values at −0.2 MPa (4.47–5.29) and declined at −0.8 MPa (1.50–2.00), and multivariate analyses showed that variation in germination responses was mainly associated with germination timing and vigor rather than seed viability. Under field conditions, no significant effects of fertilization level, microbial bio-inoculation, or their interaction were detected on agronomic traits or yield, although variability between locations was observed; plant height ranged from 38.5–46.3 cm in Lamud and from 100.6–108.3 cm in Molinopampa, while grain yield varied from 698–1846 kg/ha and 8771–9919 kg/ha, respectively. Overall, environmental conditions exerted a stronger influence than microbial bio-inoculation on germination dynamics and field productivity, while the findings provide practical guidance for improving pea production with bio-inoculants and optimized fertilization. Full article

Salicylic acid (SA) is a key endogenous regulator involved in plant defense responses to biotic and abiotic stresses. The increasing resistance of pathogens to chemical plant protection products and growing environmental restrictions have intensified the search for alternative strategies to enhance plant health and stress tolerance. Among these strategies, the induction of natural defense mechanisms, in which SA plays a central signaling role, has gained particular attention. This review summarizes current knowledge on the role of SA in shaping plant resistance to environmental factors. The fundamental mechanisms of plant defense, including innate immunity, induced systemic resistance (ISR), and systemic acquired resistance (SAR), are discussed, with emphasis on the signaling function of SA and its interaction with other phytohormones, especially jasmonic acid and ethylene. The role of SA in regulating physiological processes associated with stress tolerance, such as antioxidant system activity, photosynthesis, plant growth, and senescence, is highlighted. The review of research results indicates that appropriately selected doses and timing of SA treatments can enhance resistance to selected pathogens and improve plant tolerance to adverse environmental conditions. However, treatment effectiveness depends on multiple factors, particularly SA concentration and plant–pathogen interactions. Salicylic acid is a promising component of integrated and sustainable plant protection strategies. Further research, especially under field conditions, is necessary to optimize its practical use and fully determine its potential in modern agriculture. Full article

Plants of the genus Opuntia are cacti that grow under natural conditions, with scarce humidity, drastic changes in daytime and nighttime temperatures, and poor soils. Their fruits are a food source in certain regions of the world, and their modified stems (cladodes) have diverse uses, including human consumption—especially when young, tender, and succulent (“nopalitos”) —livestock feed, and raw material for various products. There are approximately 300 species and dozens of variants of this genus, identified as wild, semi-domesticated, or domesticated. The physiological and biochemical responses to abiotic stress in these species are diverse but are related to their Crassulacean acid metabolism and the level of domestication. The morphological modifications in fruits, seeds, and cladodes of the genus Opuntia during domestication appear to be the sum of numerous significant biochemical-physiological changes, but generally of small magnitude. Thus, evaluating wild, semi-domesticated, and domesticated Opuntia species allows us to understand the physiological and biochemical processes along a natural gradient (original and modified by natural and artificial selection and by the cultivation environment) and their alteration by abiotic stress of any kind. This review summarizes our main advances in considering the genus Opuntia as a model for evaluating abiotic stress in the physiology and biochemistry of succulent plants. Furthermore, it shows high relevance, especially in the context of climate change, because Opuntia species are key to food security in arid zones. Full article

Elm (Ulmus pumila), an ecologically and economically valuable tree, exhibits significant tolerance to abiotic stress. However, the physiological and molecular mechanisms underlying its stress adaptabilities are largely unknown. Here, two elm salt-tolerant cultivars (ST-Y and ST-Q) and two salt-sensitive cultivars (SS-J and SS-JX) were identified in the 13 elm accessions collected from Shandong province, China via phenotypic salt tolerance screening. The key salt tolerance mechanisms were explored in ST-Y and SS-J via transcriptomic (RNA-Seq) assays, and subsequently validated in ST-Q and SS-JX via quantitative real-time polymerase chain reaction (RT-qPCR) analyses. Under salt treatment, ST-Y maintained leaf intactness and enhanced activation of antioxidant enzymes with a reduction in reactive oxygen species (ROS) accumulation, while SS-J suffered leaf defoliation and showed compromised antioxidant capacity with higher ROS levels. KEGG pathway analysis revealed that ST-Y leaves exhibited a unique enrichment of differentially expressed genes (DEGs) in the “oxidative phosphorylation (OXPHOS)” pathway after salt stress treatment. Both ST-Y and SS-J exhibited significant enrichment in the “metabolic pathway”, but the number of DEGs in the “arachidonic acid (AA) metabolism” pathway was much higher in ST-Y than in SS-J. Further RT-qPCR analysis verified the accuracy of the RNA-Seq data and revealed that genes related to the “OXPHOS” pathway were significantly up-regulated in ST-Y and ST-Q, but down-regulated in SS-J and SS-JX. Our results suggested that OXPHOS efficiency is critical to antioxidant capacity in elm salt tolerance, suggesting new avenues for forest tree improvement for climate change. Full article

Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase, a key acyltransferase in the phenylpropanoid pathway and a canonical member of the BAHD acyltransferase family (BAHD), catalyzes the formation of pivotal intermediates in the biosynthesis of secondary metabolites such as lignin, chlorogenic acid, and flavonoids. These compounds serve indispensable protective functions in terrestrial plants, underpinning their adaptive responses to abiotic stresses such as drought, ultraviolet (UV) radiation, and oxidative damage. Although the role of HCT/HQT in the core phenylpropanoid pathway has been extensively characterized, its precise functional contributions to the flavonoid biosynthetic branch—particularly with respect to substrate selectivity, kinetic regulation, and metabolic channeling—remain incompletely understood. This review systematically analyzes the structural features, spatial conformation, catalytic mechanism, and substrate promiscuity of HCT/HQT to clarify its molecular determinants of activity and specificity. Furthermore, it highlights regulatory factors influencing HCT/HQT gene expression, such as transcription factors (MYB, bHLH, WRKY), phytohormones (GA₃, Eth, MeJA, 6-BA, MT), and abiotic/biotic stressors (temperature, blue light, nitric oxide, nano-selenium). Collectively, these insights illuminate how plants dynamically fine-tune phenylpropanoid metabolism in coordination with developmental programs and environmental challenges. This work provides a foundation for further research on HCT/HQT and supports efforts to develop improved crop varieties through targeted regulation of this central metabolic node. Full article

Climate change is advancing faster than conventional crop cycles, and this temporal lag represents a critical constraint on modern agricultural production. By significantly shortening generation times, speed breeding (SB) transforms breeding from a fixed constraint into a manageable experimental parameter. Today, SB is increasingly integrated within climate-smart agriculture, not only for rapid generation turnover but also through emerging stress-informed SB protocols designed to mimic key abiotic constraints. At the same time, no universal approach to SB exists. Protocols must be adapted to the highly heterogeneous species-specificities regarding photoperiodicity and light response. The accelerated loss of genetic diversity due to small populations, together with the limited ability of controlled chambers to simulate complex field conditions, remains a major challenge. This review synthesizes literature from 1995 to 2025 on the technical foundations of SB, its application in major crops, and integration with modern breeding, phenotyping, and AI-driven tools. The available knowledge and evidence indicate that SB is most effective when integrated into breeding pipelines together with multi-district field-testing and stress-aware protocols, rather than used as an isolated technique. SB provides one of the strongest levers available to accelerate crop improvement under rapidly changing climate conditions. Full article

KNOTTED1-LIKE HOMEOBOX (KNOX) genes are conserved transcription factors that play crucial roles in plant growth, development, and stress responses. However, systematic characterization of the KNOX family in Malus sieversii, a valuable germplasm resource with outstanding stress tolerance and flavonoid accumulation, remains lacking. In this study, we performed a genome-wide identification of the KNOX gene family in M. sieversii and identified 21 MsiKNOX genes. Phylogenetic analysis classified these genes into three subfamilies (Class I, II, and M), with structural features and motif compositions consistent with those of their orthologs in Arabidopsis thaliana and cultivated apple. Chromosomal localization revealed an uneven distribution across 13 chromosomes, and synteny analysis indicated both conserved evolution and lineage-specific expansion of the KNOX family in M. sieversii. Promoter cis-element analysis suggested that MsiKNOX genes are potentially involved in responses to multiple abiotic stresses and hormone signaling. Expression profiling under ABA and GA treatments showed that most MsiKNOX genes responded differentially to these phytohormones. Notably, MsiKNOX09 was significantly upregulated by ABA and downregulated by GA, and was further shown to physically interact with the anthocyanin-associated MsiMYB1 in yeast two-hybrid and split-luciferase assays. These findings provide a comprehensive overview of the KNOX gene family in M. sieversii and suggest that MsiKNOX09 acts as a hormone-responsive regulator and may participate in MsiMYB1-mediated regulatory pathways. Full article

Cunninghamia lanceolata (C. lanceolata), a pivotal economic timber species in southern China, faces increasing threats from global warming and heat stress. Due to limited knowledge regarding its stress response mechanisms, uncovering the molecular basis of heat tolerance is crucial for breeding resilient varieties. Therefore, the objective of this study was to elucidate the physiological and molecular mechanisms of C. lanceolata in response to heat stress. In this study, we performed a time-series transcriptomic analysis on leaves of C. lanceolata ‘6421’ seedlings exposed to heat stress (39 °C) for 0, 1, 4, 8, 12, and 16 h. A total of 1130 differentially expressed genes (DEGs) were identified, with functions primarily enriched in signal transduction, protein folding, and the MAPK and NF-kappa B signaling pathways. Weighted gene co-expression network analysis (WGCNA) revealed a complex regulatory network, identifying ClHsf8 as a central hub transcription factor. To validate its function, ClHsf8 was cloned and overexpressed in tobacco (Nicotiana benthamiana). Under heat stress conditions, transgenic plants exhibited enhanced thermotolerance compared to wild-type controls, characterized by significantly higher activities of antioxidant enzymes (SOD, POD, and CAT) and reduced accumulation of MDA and H₂O₂. Our findings elucidate the molecular regulatory mechanisms of C. lanceolata in response to high temperatures and demonstrate the functional role of ClHsf8 in conferring heat tolerance, providing a theoretical foundation for the genetic improvement of heat-resilient cultivars. Full article

Genetically modified (GM) plants have been commercially grown for 30 years, and their acceptance depends on a thorough risk assessment. Environmental Risk Assessment (ERA) evaluates potential impacts of releasing GM plants into the environment, whether through cultivation or import for food, feed, and processing. A key component is assessing potential gene flow to crop wild relatives or non-GM crops. For gene flow to significantly affect the environment, transferred genes must provide a selective advantage. Since most GM plants are engineered for herbicide tolerance, insect resistance, or stacked traits, evaluating such advantages is relatively straightforward. New genomic techniques (NGTs) can generate plants with a wider range of traits, including tolerance to biotic and abiotic stress. Although still considered GM in the EU, their genomic changes can complicate detection, identification, and ERA, especially when such traits may offer advantages under stress conditions. This scoping review focuses on gene flow in two crops: oilseed rape (canola) (Brassica napus L.) and potato (Solanum tuberosum L.). In canola, transgene movement can increase weediness, fitness, herbicide resistance, or genetic diversity in feral or related populations. Gene flow in potato is less studied, with concerns centered on contamination risks in the Andean diversity center. Limited data exist for NGT plants, though many are expected to resemble conventionally bred varieties, suggesting comparable environmental impacts. Full article

The Fruit Weight 2.2-like (FWL) gene family, characterized by the conserved PLAC8 domain, plays important roles in plant organ development and metal ion homeostasis. However, the systematic characterization of FWL genes in rice (Oryza sativa) and their involvement in abiotic stress responses remain insufficiently understood. In this study, a genome-wide identification of the FWL gene family in rice was performed, resulting in the identification of nine OsFWL genes, including a previously unreported member, OsFWL9. Phylogenetic analysis of FWL proteins from rice, maize, soybean, and Arabidopsis thaliana classified the family into three distinct subgroups, indicating both conserved and divergent evolutionary relationships. Structural and conserved motif analyses revealed that OsFWL proteins share similar domain architectures, while promoter analysis uncovered abundant cis-acting elements associated with stress responses, phytohormone signaling, and plant growth and development. Expression profiling demonstrated that most OsFWL genes were rapidly induced by drought, high temperature, salt, and arsenic stresses at the seedling stage, suggesting their broad involvement in abiotic stress adaptation. Notably, OsFWL8 exhibited a unique expression pattern, being significantly suppressed under arsenic stress. Functional characterization using CRISPR/Cas9-generated knockout mutants and overexpression lines revealed that OsFWL8 negatively regulates arsenic tolerance in rice. Overexpression of OsFWL8 markedly increased plant sensitivity to arsenic stress. Furthermore, arsenic detoxification-related genes, including OsABCC1 and OsPCS2, were significantly upregulated in fwl8 mutants under arsenic treatment. These results indicate that OsFWL8 may modulate arsenic tolerance by influencing arsenic sequestration and detoxification pathways. Overall, this study provides a comprehensive overview of the FWL gene family in rice and identifies OsFWL8 as a key regulator of arsenic stress response, offering valuable insights for improving rice tolerance to heavy metal stress. Full article