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Keywords = autotrophic iron oxidizing bacteria

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14 pages, 2433 KB  
Article
Enhanced Nitrogen Removal by Anammox in Iron-Based Autotrophic Denitrification Filters
by Benzhou Gong, Kui Zhang, Yanjie Huang, Wenhao Yang and Yingmu Wang
Water 2026, 18(4), 451; https://doi.org/10.3390/w18040451 - 9 Feb 2026
Viewed by 570
Abstract
Nitrogen pollution poses significant risks to both environmental systems and human health. Iron-based autotrophic denitrification offers a green and cost-effective strategy for nitrogen removal, but is often accompanied by the accumulation of undesirable byproducts. A nitrogen removal system combining anammox with iron-based autotrophic [...] Read more.
Nitrogen pollution poses significant risks to both environmental systems and human health. Iron-based autotrophic denitrification offers a green and cost-effective strategy for nitrogen removal, but is often accompanied by the accumulation of undesirable byproducts. A nitrogen removal system combining anammox with iron-based autotrophic denitrification was constructed in this study to investigate the enhancement effect of anaerobic ammonium-oxidizing bacteria (AnAOB). The results showed that during the stable operation phase, nitrate removal efficiencies reached 91.45% and 84.29% for groups A (0.5 g/L AnAOB) and B (0.1 g/L AnAOB), respectively, significantly higher than the 62.87% observed in the control group. Furthermore, the experimental groups exhibited markedly reduced accumulation of ammonium byproducts. Microbial community analysis revealed that AnAOB addition increased microbial richness and diversity, and promoted community shifts that favored nitrogen removal. Notably, even low dosages of AnAOB yielded strong performance enhancements, underscoring the economic viability of this integrated approach. Structural characterization using SEM, XRD, and XPS indicated that system performance deterioration in the later stages was primarily due to cell encrustation and iron passivation. Electrochemical analyses further demonstrated that iron passivation impaired electron transfer on the filler surface, thereby reducing denitrification efficiency, whereas extracellular polymeric substances (EPS) did not exhibit such inhibitory effects. These findings provide both mechanistic insight and practical guidance for the design and optimization of anammox-enhanced iron-based denitrification systems. Full article
(This article belongs to the Special Issue Advanced Biological Wastewater Treatment and Nutrient Removal)
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18 pages, 4646 KB  
Article
Diversity of Mixotrophic Neutrophilic Thiosulfate- and Iron-Oxidizing Bacteria from Deep-Sea Hydrothermal Vents
by Yang He, Xiang Zeng, Fei Xu and Zongze Shao
Microorganisms 2023, 11(1), 100; https://doi.org/10.3390/microorganisms11010100 - 30 Dec 2022
Cited by 15 | Viewed by 5614
Abstract
At deep-sea hydrothermal vents, sulfur oxidation and iron oxidation are of the highest importance to microbial metabolisms, which are thought to contribute mainly in chemolithoautotrophic groups. In this study, 17 mixotrophic neutrophilic thiosulfate- and iron-oxidizing bacteria were isolated from hydrothermal fields on the [...] Read more.
At deep-sea hydrothermal vents, sulfur oxidation and iron oxidation are of the highest importance to microbial metabolisms, which are thought to contribute mainly in chemolithoautotrophic groups. In this study, 17 mixotrophic neutrophilic thiosulfate- and iron-oxidizing bacteria were isolated from hydrothermal fields on the Carlsberg Ridge in the Indian Ocean, nine to the γ-proteobacteria (Halomonas (4), Pseudomonas (2), Marinobacter (2), and Rheinheimera (1)), seven to the α-proteobacteria (Thalassospira, Qipengyuania, Salipiger, Seohaeicola, Martelella, Citromicrobium, and Aurantimonas), and one to the Actinobacteria (Agromyces), as determined by their 16S rRNA and genome sequences. The physiological characterization of these isolates revealed wide versatility in electron donors (Fe(II) and Mn(II), or thiosulfate) and a variety of lifestyles as lithotrophic or heterotrophic, microaerobic, or anaerobic. As a representative strain, Pseudomonas sp. IOP_13 showed its autotrophic gowth from 105 cells/ml to 107 cells/ml;carbon dioxide fixation capacity with the δ13CVPDB in the biomass increased from −27.42‰ to 3460.06‰; the thiosulfate-oxidizing ability with produced SO42− increased from 60 mg/L to 287 mg/L; and the iron-oxidizing ability with Fe(II) decreased from 10 mM to 5.2 mM. In addition, iron-oxide crust formed outside the cells. Gene coding for energy metabolism involved in possible iron, manganese, and sulfur oxidation, and denitrification was identified by their genome analysis. This study sheds light on the function of the mixotrophic microbial community in the iron/manganese/sulfur cycles and the carbon fixation of the hydrothermal fields. Full article
(This article belongs to the Special Issue Diversity of Extremophiles in Hydrothermal Environments)
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23 pages, 2858 KB  
Article
Insights into Autotrophic Activities and Carbon Flow in Iron-Rich Pelagic Aggregates (Iron Snow)
by Qianqian Li, Rebecca E. Cooper, Carl-Eric Wegner, Martin Taubert, Nico Jehmlich, Martin von Bergen and Kirsten Küsel
Microorganisms 2021, 9(7), 1368; https://doi.org/10.3390/microorganisms9071368 - 23 Jun 2021
Cited by 6 | Viewed by 3887
Abstract
Pelagic aggregates function as biological carbon pumps for transporting fixed organic carbon to sediments. In iron-rich (ferruginous) lakes, photoferrotrophic and chemolithoautotrophic bacteria contribute to CO2 fixation by oxidizing reduced iron, leading to the formation of iron-rich pelagic aggregates (iron snow). The significance [...] Read more.
Pelagic aggregates function as biological carbon pumps for transporting fixed organic carbon to sediments. In iron-rich (ferruginous) lakes, photoferrotrophic and chemolithoautotrophic bacteria contribute to CO2 fixation by oxidizing reduced iron, leading to the formation of iron-rich pelagic aggregates (iron snow). The significance of iron oxidizers in carbon fixation, their general role in iron snow functioning and the flow of carbon within iron snow is still unclear. Here, we combined a two-year metatranscriptome analysis of iron snow collected from an acidic lake with protein-based stable isotope probing to determine general metabolic activities and to trace 13CO2 incorporation in iron snow over time under oxic and anoxic conditions. mRNA-derived metatranscriptome of iron snow identified four key players (Leptospirillum, Ferrovum, Acidithrix, Acidiphilium) with relative abundances (59.6–85.7%) encoding ecologically relevant pathways, including carbon fixation and polysaccharide biosynthesis. No transcriptional activity for carbon fixation from archaea or eukaryotes was detected. 13CO2 incorporation studies identified active chemolithoautotroph Ferrovum under both conditions. Only 1.0–5.3% relative 13C abundances were found in heterotrophic Acidiphilium and Acidocella under oxic conditions. These data show that iron oxidizers play an important role in CO2 fixation, but the majority of fixed C will be directly transported to the sediment without feeding heterotrophs in the water column in acidic ferruginous lakes. Full article
(This article belongs to the Section Environmental Microbiology)
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18 pages, 3674 KB  
Article
Hot in Cold: Microbial Life in the Hottest Springs in Permafrost
by Tatiana V. Kochetkova, Stepan V. Toshchakov, Kseniya S. Zayulina, Alexander G. Elcheninov, Daria G. Zavarzina, Vasiliy Yu. Lavrushin, Elizaveta A. Bonch-Osmolovskaya and Ilya V. Kublanov
Microorganisms 2020, 8(9), 1308; https://doi.org/10.3390/microorganisms8091308 - 27 Aug 2020
Cited by 21 | Viewed by 5725
Abstract
Chukotka is an arctic region located in the continuous permafrost zone, but thermal springs are abundant there. In this study, for the first time, the microbial communities of the Chukotka hot springs (CHS) biofilms and sediments with temperatures 54–94 °C were investigated and [...] Read more.
Chukotka is an arctic region located in the continuous permafrost zone, but thermal springs are abundant there. In this study, for the first time, the microbial communities of the Chukotka hot springs (CHS) biofilms and sediments with temperatures 54–94 °C were investigated and analyzed by NGS sequencing of 16S rRNA gene amplicons. In microbial mats (54–75 °C), phototrophic bacteria of genus Chloroflexus dominated (up to 89% of all prokaryotes), while Aquificae were the most numerous at higher temperatures in Fe-rich sediments and filamentous “streamers” (up to 92%). The electron donors typical for Aquificae, such as H2S and H2, are absent or present only in trace amounts, and the prevalence of Aquificae might be connected with their ability to oxidize the ferrous iron present in CHS sediments. Armatimonadetes, Proteobacteria, Deinococcus-Thermus, Dictyoglomi, and Thermotogae, as well as uncultured bacteria (candidate divisions Oct-Spa1-106, GAL15, and OPB56), were numerous, and Cyanobacteria were present in low numbers. Archaea (less than 8% of the total community of each tested spring) belonged to Bathyarchaeota, Aigarchaeota, and Thaumarchaeota. The geographical location and the predominantly autotrophic microbial community, built on mechanisms other than the sulfur cycle-based ones, make CHS a special and unique terrestrial geothermal ecosystem. Full article
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9 pages, 534 KB  
Article
Characteristics of an Iron-Reducing, Moderately Acidophilic Actinobacterium Isolated from Pyritic Mine Waste, and Its Potential Role in Mitigating Mineral Dissolution in Mineral Tailings Deposits
by Ivan Nancucheo and D. Barrie Johnson
Microorganisms 2020, 8(7), 990; https://doi.org/10.3390/microorganisms8070990 - 2 Jul 2020
Cited by 5 | Viewed by 3760
Abstract
Reactive pyritic mine tailings can be populated by chemolithotrophic prokaryotes that enhance the solubilities of many metals, though iron-reducing heterotrophic microorganisms can inhibit the environmental risk posed by tailings by promoting processes that are the reverse of those carried out by pyrite-oxidising autotrophic [...] Read more.
Reactive pyritic mine tailings can be populated by chemolithotrophic prokaryotes that enhance the solubilities of many metals, though iron-reducing heterotrophic microorganisms can inhibit the environmental risk posed by tailings by promoting processes that are the reverse of those carried out by pyrite-oxidising autotrophic bacteria. A strain (IT2) of Curtobacterium ammoniigenes, a bacterium not previously identified as being associated with acidic mine wastes, was isolated from pyritic mine tailings and partially characterized. Strain IT2 was able to reduce ferric iron under anaerobic conditions, but was not found to catalyse the oxidation of ferrous iron or elemental (zero-valent) sulfur, and was an obligate heterotrophic. It metabolized monosaccharides and required small amounts of yeast extract for growth. Isolate IT2 is a mesophilic bacterium, with a temperature growth optimum of 30 °C and is moderately acidophilic, growing optimally at pH 4.0 and between pH 2.7 and 5.0. The isolate tolerated elevated concentrations of many transition metals, and was able to grow in the cell-free spent medium of the acidophilic autotroph Acidithiobacillus ferrooxidans, supporting the hypothesis that it can proliferate in acidic mine tailings. Its potential role in mitigating the production of acidic, metal-rich drainage waters from mine wastes is discussed. Full article
(This article belongs to the Special Issue Microbial Diversity in Extreme Environments)
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24 pages, 706 KB  
Review
Distribution of Acidophilic Microorganisms in Natural and Man-Made Acidic Environments
by Sabrina Hedrich and Axel Schippers
Curr. Issues Mol. Biol. 2021, 40(1), 25-48; https://doi.org/10.21775/cimb.040.025 - 11 Mar 2020
Cited by 64 | Viewed by 2598
Abstract
Acidophilic microorganisms can thrive in both natural and man-made environments. Natural acidic environments comprise hydrothermal sites on land or in the deep sea, cave systems, acid sulfate soils and acidic fens, as well as naturally exposed ore deposits (gossans). Man-made acidic environments are [...] Read more.
Acidophilic microorganisms can thrive in both natural and man-made environments. Natural acidic environments comprise hydrothermal sites on land or in the deep sea, cave systems, acid sulfate soils and acidic fens, as well as naturally exposed ore deposits (gossans). Man-made acidic environments are mostly mine sites including mine waste dumps and tailings, acid mine drainage and biomining operations. The biogeochemical cycles of sulfur and iron, rather than those of carbon and nitrogen, assume centre stage in these environments. Ferrous iron and reduced sulfur compounds originating from geothermal activity or mineral weathering provide energy sources for acidophilic, chemolithotrophic iron- and sulfur-oxidizing bacteria and archaea (including species that are autotrophic, heterotrophic or mixotrophic) and, in contrast to most other types of environments, these are often numerically dominant in acidic sites. Anaerobic growth of acidophiles can occur via the reduction of ferric iron, elemental sulfur or sulfate. While the activities of acidophiles can be harmful to the environment, as in the case of acid mine drainage, they can also be used for the extraction and recovery of metals, as in the case of biomining. Considering the important roles of acidophiles in biogeochemical cycles, pollution and biotechnology, there is a strong need to understanding of their physiology, biochemistry and ecology. Full article
12 pages, 1389 KB  
Article
Laboratory Scale Investigations on Heap (Bio)leaching of Municipal Solid Waste Incineration Bottom Ash
by Jarno Mäkinen, Marja Salo, Jaakko Soini and Päivi Kinnunen
Minerals 2019, 9(5), 290; https://doi.org/10.3390/min9050290 - 11 May 2019
Cited by 17 | Viewed by 5291
Abstract
Municipal solid waste incineration bottom ash (MSWI BA) is the main output of the municipal solid waste incineration process, both in mass and volume. It contains some heavy metals that possess market value, but may also limit the utilization of the material. This [...] Read more.
Municipal solid waste incineration bottom ash (MSWI BA) is the main output of the municipal solid waste incineration process, both in mass and volume. It contains some heavy metals that possess market value, but may also limit the utilization of the material. This study illustrates a robust and simple heap leaching method for recovering zinc and copper from MSWI BA. Moreover, the effect of autotrophic and acidophilic bioleaching microorganisms in the system was studied. Leaching yields for zinc and copper varied between 18–53% and 6–44%, respectively. For intensified copper dissolution, aeration and possibly iron oxidizing bacteria caused clear benefits. The MSWI BA was challenging to treat. The main components, iron and aluminum, dissolved easily and unwantedly, decreasing the quality of pregnant leach solution. Moreover, the physical nature and the extreme heterogeneity of the material caused operative requirements for the heap leaching. Nevertheless, with optimized parameters, heap leaching may offer a proper solution for MSWI BA treatment. Full article
(This article belongs to the Special Issue Recent Advances in Hydro- and Biohydrometallurgy)
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22 pages, 1069 KB  
Article
Evolution of Microbial “Streamer” Growths in an Acidic, Metal-Contaminated Stream Draining an Abandoned Underground Copper Mine
by Catherine M. Kay, Owen F. Rowe, Laura Rocchetti, Kris Coupland, Kevin B. Hallberg and D. Barrie Johnson
Life 2013, 3(1), 189-210; https://doi.org/10.3390/life3010189 - 7 Feb 2013
Cited by 71 | Viewed by 10119
Abstract
A nine year study was carried out on the evolution of macroscopic “acid streamer” growths in acidic, metal-rich mine water from the point of construction of a new channel to drain an abandoned underground copper mine. The new channel became rapidly colonized by [...] Read more.
A nine year study was carried out on the evolution of macroscopic “acid streamer” growths in acidic, metal-rich mine water from the point of construction of a new channel to drain an abandoned underground copper mine. The new channel became rapidly colonized by acidophilic bacteria: two species of autotrophic iron-oxidizers (Acidithiobacillus ferrivorans and “Ferrovum myxofaciens”) and a heterotrophic iron-oxidizer (a novel genus/species with the proposed name “Acidithrix ferrooxidans”). The same bacteria dominated the acid streamer communities for the entire nine year period, with the autotrophic species accounting for ~80% of the micro-organisms in the streamer growths (as determined by terminal restriction enzyme fragment length polymorphism (T-RFLP) analysis). Biodiversity of the acid streamers became somewhat greater in time, and included species of heterotrophic acidophiles that reduce ferric iron (Acidiphilium, Acidobacterium, Acidocella and gammaproteobacterium WJ2) and other autotrophic iron-oxidizers (Acidithiobacillus ferrooxidans and Leptospirillum ferrooxidans). The diversity of archaea in the acid streamers was far more limited; relatively few clones were obtained, all of which were very distantly related to known species of euryarchaeotes. Some differences were apparent between the acid streamer community and planktonic-phase bacteria. This study has provided unique insights into the evolution of an extremophilic microbial community, and identified several novel species of acidophilic prokaryotes. Full article
(This article belongs to the Special Issue Extremophiles and Extreme Environments)
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