Search Results (7,900)

The prized wild mushroom Tricholoma matsutake maintains distinctive microbiota within its dominant zone; however, the spatial and seasonal reorganization of microbiota from taxonomic and functional perspectives remain poorly understood. High-throughput amplicon sequencing was performed in warming (March–June) and cooling (September–December) seasons to compare microbial communities among T. matsutake-dominant (present, visible mycelium) and -nondominant soils (transition, adjacent with present; control, distant from fairy ring). Fungal and bacterial community structures in T. matsutake-dominant soils were obviously distinct (ANOSIM, R > 0.6, p = 0.001), and bacterial communities exhibited clear seasonal separation. The relative abundances of Ascomycota and Mortierellomycota significantly reduced, whereas mycorrhiza-helper bacteria, including Paenibacillus, Bacillus, and Cohnella, were enriched. Functional predictions suggested that the potential expression of cofactor and vitamin biosynthesis, nutrient degradation, and inorganic nutrient metabolism pathways may be enriched in T. matsutake-dominant soil. During the fruiting period, the expression of the predicted amino acid biosynthesis pathway may be reduced, whereas that of the cofactor/carrier/vitamin biosynthesis pathway may be enriched. Our findings suggest that T. matsutake dominance could be associated with the spatial and seasonal restructuring of soil microbial communities, potentially leading to the formation of functionally interconnected microbial networks. Therefore, this study predicts hidden ecological insights that, once biochemically validated, may be used to develop important strategies for the sustainable conservation and artificial cultivation of T. matsutake. Full article

Small-scale inland fisheries in the Amazon are critical for food security, yet their sustainability is increasingly threatened by overexploitation and environmental degradation. In data-limited contexts such as the northern Ecuadorian Amazon, the absence of continuous monitoring constrains the development of adaptive management strategies. This study develops an integrated socio-ecological baseline to support the establishment of fisheries agreements in five Indigenous communities of the Napo and Aguarico rivers. Through a participatory monitoring approach, we generated reproductive parameters (gonadosomatic index, fecundity, size at first maturity), population structure metrics, and length–weight relationships for key subsistence species across three hydrological phases. Reproductive investment exhibited marked seasonality, with peak gonadosomatic indices during rising waters in most species, identifying a critical period for protection. Life-history strategies ranged from high-fecundity periodic strategists to low-fecundity equilibrium species, implying differentiated vulnerability to harvesting. Community perceptions prioritized large migratory catfish and floodplain habitats, aligning with biological indicators of vulnerability. High performance in technical training demonstrated the feasibility of long-term local monitoring systems. By linking biological indicators with local ecological knowledge, this study proposes a pathway from baseline assessment to adaptive co-management. The framework presented here provides a transferable model for strengthening sustainability, governance, and food security in tropical small-scale fisheries facing persistent data limitations. Full article

Cladocora caespitosa is an endemic hermatypic scleractinian in the Mediterranean Sea, currently threatened by both environmental and anthropogenic pressures, whereas Oculina patagonica is a cryptogenic hermatypic scleractinian that is expanding across the basin. This study provides the first assessment of co-occurring natural populations of these shallow-water taxa, examining their population structures, habitat preferences, and responses to environmental stressors based on SCUBA surveys conducted in the summers and autumns of 2022 and 2023. Both species were dominated by medium- to large-sized colonies, indicating relatively stable population structures, with C. caespitosa exhibiting significantly higher densities than O. patagonica. Both scleractinians showed a preference for sub-vertical and vertical rocky substrates, although O. patagonica appeared more tolerant of horizontal surfaces. Disease events were more frequent and severe in C. caespitosa, particularly affecting larger colonies during autumn 2022, whereas O. patagonica showed lower incidence and greater resilience overall. Temporal comparisons suggest that O. patagonica may act as a strong competitor to C. caespitosa; however, both species demonstrate a considerable capacity for recovery, likely due to adaptation to high-stress environments. These findings highlight key differences in ecological strategies and vulnerability to environmental stressors, emphasizing the need for targeted conservation approaches to preserve Mediterranean shallow-water coral communities under accelerating climate change. Full article

Cascade reservoirs on the Drina River (Bosnia and Herzegovina) are heavily modified water bodies that require reliable biological tools for assessing trophic status and ecological potential. Under the Water Framework Directive (WFD), assessments of surface water ecological status and potential rely on biological quality elements, since aquatic communities integrate and respond to prevailing environmental conditions and thus serve as reliable indicators of water quality. This study aims to (i) describe phytoplankton diversity, biomass, and functional-group composition along the Drina reservoir cascade, (ii) examine monthly changes across the studied reservoirs, (iii) determine trophic status and ecological potential, and (iv) provide a preliminary estimate of total phosphorus thresholds that may support future setting of ecological potential boundaries. Phytoplankton composition and functional groups were analysed in three longitudinally connected reservoirs of the Drina River during four monthly surveys in 2024. A total of 80 phytoplankton taxa were recorded, with diatoms dominating most of the study period. The highest biomasses were recorded for Fragilaria crotonensis, Dinobryon divergens, Acanthoceras zachariasii and Sphaerocystis sp., while the dominant functional groups were P, E, A, and F. Phytoplankton assemblage structure showed moderate spatial differentiation among the reservoirs. Mean chlorophyll a and Carlson’s Trophic State Index indicated eutrophic conditions in the Višegrad Reservoir and mesotrophic conditions in the Perućac and Zvornik reservoirs, while biomass showed a pronounced summer maximum, particularly in Perućac. Ecological potential was generally classified as good or better, except for a moderate classification in the Zvornik Reservoir in late summer. The good/moderate TP boundary was estimated at 39 µg L⁻¹, linking EQR-based ecological assessment with the onset of eutrophic conditions. Overall, this study represents the first application of the phytoplankton functional group approach in cascade reservoirs in Bosnia and Herzegovina and may provide a valuable basis for the development of a phytoplankton-based monitoring framework in lakes and reservoirs, which is currently lacking. Full article

River corridor rehabilitation is increasingly expected to deliver coupled outcomes by combining ecological recovery with measurable improvements in human well-being. Cultural ecosystem services (CESs), the non-material benefits people derive from landscapes, are central to this objective but remain difficult to operationalize in securitized transboundary settings, where border governance, uneven mobility, and community histories shape access to rivers and the formation of cultural meanings. This study examines whether perceived conservation effectiveness is associated with higher CES value in the Lower Jordan River Basin (LJRB) and whether this association persists after accounting for the community-group structure. Using survey data from 445 respondents across seven community groups, the perceived CES valuation was assessed through a five-point Cultural Significance rating, analyzed alongside conservation-related and contextual variables. Conservation was measured through perceived conservation impact and self-reported conservation involvement (yes/no). A staged inference design combined group comparisons and multivariable regression with adjustments for the community-group structure and contextual controls. Conservation involvement was not associated with meaningful differences in Cultural Significance. The perceived conservation impact showed a positive association in pooled and simple models but lost independent significance after adjusting for community-group structure, which accounted for much of the explanatory power. These findings indicate that CES valuation in the LJRB is structured more by community-group differences and borderland conditions than by individual conservation participation, underscoring the importance of locally encounterable outcomes and group-tailored engagement strategies in transboundary river planning. Full article

This study examines the evolution of the scientific literature on mining and heavy metals, with a particular focus on biosanitary risks associated with childhood exposure. The research integrates a systematic literature review following the PRISMA (Preferred Reporting Items for Systematic Reviews and Meta-Analyses) methodology, combined with a bibliometric analysis of Scopus-indexed publications, international epidemiological data, and an evaluation of the socio-environmental context in Ecuadorian mining regions. The PRISMA-based screening process was applied to identify, filter, and select relevant peer-reviewed studies, enabling the delimitation of a focused corpus of literature, with particular attention given to scientific contributions produced by Latin American researchers and institutions. The results reveal a significant concentration of knowledge production among a limited number of countries and institutions, the dominance of English as the main language of scientific communication, and the centrality of journals in environmental sciences and toxicology. While notable progress has been made in identifying contaminants and exposure pathways, governance structures, territorial disparities, and policy implementation processes remain insufficiently explored. In Ecuador, the rapid growth of mining concessions in ecologically sensitive zones presents potential threats to children’s neurocognitive development, highlighting the urgent need for ongoing surveillance, biomonitoring programs, and preventive public health measures. The study emphasizes the importance of strengthening regional research capacity and fostering more equitable international scientific collaborations to ensure that knowledge production is responsive to local contexts and effectively safeguards vulnerable populations. Full article

Arbuscular mycorrhizal fungi (AMF) are widely applied as bioinoculants to enhance crop performance, yet their broader ecological effects on rhizosphere microbial assembly under field conditions remain insufficiently understood. Here, we evaluated the impact of a commercial AMF inoculant and its carrier material on lettuce performance and rhizosphere microbial communities in an open-field experiment. We hypothesized that both viable AMF propagules and formulation components contribute to shifts in rhizosphere processes. Active AMF inoculation significantly increased root colonization and fresh biomass at harvest, confirming successful establishment and enhanced plant performance under field conditions. Colonization levels in the heat-inactivated carrier treatment were comparable to the non-inoculated control, indicating that the carrier did not inhibit indigenous AMF activity or induce nutrient-mediated suppression of symbiosis. Plant physiological responses were stage-dependent, supporting the context-dependent nature of AMF effects in dynamic field environments. High-throughput sequencing revealed no significant treatment effects on bacterial or fungal alpha diversity. However, beta-diversity analyses demonstrated significant compositional restructuring of rhizosphere communities, particularly within the bacterial domain. A stable core microbiome persisted across treatments, yet relative abundances and community evenness were altered by both active inoculation and carrier application. These results suggest that AMF inoculation reorganizes microbial community structure predominantly via shifts in ecological niche occupation. Collectively, our results show that AMF inoculation functions not only as a symbiotic nutrient-acquisition strategy but also as a driver of rhizosphere microbial reorganization under field conditions. Integrating plant performance with microbiome dynamics provides a more comprehensive framework for understanding and optimizing microbial inoculants in sustainable agricultural systems. Full article

Haptophytes are ubiquitous single-celled eukaryotic plankton in coastal and open oceans that play a key role in marine biogeochemical cycling. Understanding the size structure and community composition of active haptophytes is crucial for elucidating their diversity and ecological functions. This study investigated the diversity and community structure of pico- (0.2–3 μm) and nano-sized (3–20 μm) haptophytes in the surface waters of the western Pacific Ocean using high-throughput sequencing targeting the hypervariable V4 region of the 18S rRNA. The pico-sized community exhibited significantly higher diversity than the nano-sized community. Community composition varied significantly between size fractions, driven primarily by the genera Chrysochromulina and Syracosphaera. Furthermore, the nano-sized community was more strongly influenced by environmental variables than the pico-sized community, although neither size fraction displayed a clear coastal-to-open-ocean distribution pattern. Null and neutral community model analyses indicated that both size-fractionated communities were primarily regulated by stochastic processes, while deterministic processes exerted a greater influence on the nano-sized community. Co-occurrence network analysis revealed stronger interconnections and a higher number of keystone species within the nano-sized community. In both networks, intermediate taxa (relative abundances of 0.01% to 0.1%) exhibited the highest diversity and abundance among keystone species, highlighting their pivotal role in shaping the network structure and stability. Additionally, phylogenetic analyses revealed that while the majority of ZOTUs clustered with known taxa, multiple deep-branching, uncultured lineages were identified across both size fractions, indicating substantial uncharacterized genetic diversity. This study underscores the variability and hidden diversity of size-fractionated haptophyte community structures in oligotrophic open oceans, providing valuable insights into their functional significance in global biogeochemical cycles. Full article

Background/Objectives: Glyphosate-based formulations are globally pervasive pollutants increasingly recognized as potential contributors to antimicrobial resistance (AMR) in environmental microbiomes. Although glyphosate is designed to inhibit plant 5-enolpyruvylshikimate-3-phosphate synthase, it also affects microbial metabolism, stress response, and genetic exchange. This review synthesizes the pathways through which glyphosate, its metabolite aminomethylphosphonic acid (AMPA), and commercial mixtures influence resistance-associated phenotypes and the dissemination of antibiotic resistance (ABR). Methods: A critical synthesis of the literature was conducted to evaluate the mechanistic and ecological interactions between glyphosate exposure and bacterial resistance in soil, aquatic, and host-associated microbiomes. Results: Experimental evidence showed that sublethal glyphosate exposure induced oxidative stress, altered membrane permeability, activated multidrug efflux pumps, and promoted tolerance phenotypes that could modify antibiotic susceptibility. It also enhances mutation rates and horizontal gene transfer processes associated with the emergence of resistance under controlled conditions. At the community level, glyphosate exposure is associated with microbiome restructuring and enrichment of resistance determinants, often without major shifts in overall diversity of the microbiome. These effects have been reported at environmentally relevant concentrations, although the evidence remains largely derived from laboratory and mesocosm studies. Conclusions: Glyphosate acts as both a biochemical modulator of resistance-related phenotypes and an environmental selective pressure that shapes microbial communities. Its widespread use and environmental persistence position it as a context-dependent contributor to the emergence and dissemination of AMR through interacting mechanistic and ecological pathways. Integrating AMR endpoints into pesticide risk assessments and surveillance frameworks is warranted, in addition to expanded field-based validation. Full article

Marine mucilage events are intensifying in semi-enclosed seas under accelerating climate- and nutrient-driven pressures, yet their ecosystem-level consequences for aquaculture-linked coastal habitats remain insufficiently documented. This study provides an integrated spatiotemporal assessment of water quality, phytoplankton community structure, and biometric responses of Mytilus galloprovincialis during and after the 2025 mucilage outbreak in the Gulf of Erdek (Sea of Marmara, Türkiye). Mucilage accumulation was associated with sharp increases in turbidity, total suspended solids, and particulate organic matter, alongside declines in dissolved oxygen and pH. Phytoplankton assemblages exhibited marked seasonal restructuring: the mucilage period was characterized by the coexistence of mucilage-forming taxa, non-toxic bloomers, and multiple harmful algal bloom (HAB) groups, including DSP- and ASP-related species, whereas post-mucilage conditions were dominated by non-toxic diatoms with substantially reduced HAB representation. The dinoflagellate species representing the May period in terms of abundance were Noctiluca scintillans and Prorocentrum micans; the diatom species were Chaetoceros radiatus, Cylindrotheca closterium, Pseudo-nitzschia pseudodelicatissima, and Thalassiosira rotula; and the coccolithophore was Phaeocystis pouchetii. Mussel biometric analyses revealed biometric indices and condition values markedly below regional historical baselines during the mucilage event, alongside reduced meat yield, followed by pronounced compensatory growth during the post-mucilage period. Our findings demonstrate that mucilage acts as both a physical and biological stressor, driving short-term ecological shifts in phytoplankton diversity and imposing substantial but reversible physiological impacts on mussel stocks. These results underscore the need for continuous biodiversity monitoring frameworks that integrate mucilage dynamics, HAB occurrence, and aquaculture resilience in regions vulnerable to climate-enhanced organic aggregate formation. Full article

Soil nutrient loss and infertility in rocky desertification areas severely constrain ecological restoration. Exploring the impacts of external field remediation technologies on soil quality in these regions may offer novel strategies for soil enhancement and ecosystem recovery. This study conducted a three-month experiment to investigate the impact of continuous electric (ET, 20 V) and magnetic (MT, 200 mT) field treatments on soil nutrients, enzyme activities, and bacterial communities in simulated moderate and severe rocky desertification soils. Results showed that although an overall declining trends in total contents of key soil nutrients (Total nitrogen, total phosphorus, and total potassium), both electric and magnetic field treatments effectively mitigated the decreases of total nitrogen and potassium content (with the exception of total phosphorus) in rocky desertification soils, while improving their available contents compared to the control (CK). Electric field application significantly reduced the pH of moderate and severe rocky desertification soils through electrolysis, shifting the soil from alkaline (pH 7.69 and 7.73, respectively) to slightly acidic (pH 6.71 and 6.37, respectively); Both electric and magnetic field treatments enhanced urease and sucrase activities in moderately and severely rocky desertified soils. Compared to the CK, the increases were 21.92%, 4.46%, 5.70%, and 66.43% in moderately rocky desertified soil, and 10.06%, 42.15%, 20.66%, and 0.93% in severely rocky desertified soil, respectively. Their effects on phosphatase and catalase activities varied with the degree of rocky desertification. However, in severely rocky desertified soil, both treatments significantly increased phosphatase and catalase activities by 19.55%, 24.63%, 61.07%, and 38.05% compared to the CK, respectively. Furthermore, both electric and magnetic treatments significantly reduced bacterial α-diversity (chao1, ACE, Shannon, Simpson, and Pielou J indices) but optimized community structure by enriching dominant phyla with specific ecological functions, such as Pseudomonadota (7.63–41.10%), Bacteroidota (13.52–69.29%), and Verrucomicrobiota (38.26–104.81%). Functional prediction revealed that the abundances of dominant pathways (such as chemoheterotrophy, aerobic chemoheterotrophy, and nitrogen fixation) was enhanced following both treatments. Mantel analysis further indicated strengthened correlations among soil nutrients, enzyme activities, and bacterial communities, particularly under magnetic field treatment. These findings demonstrate that electric and magnetic field applications effectively facilitate nutrient cycling, stimulate enzyme activities, and optimize microbial community structure, thereby improving soil ecological functions and overall quality in rocky desertification regions, highlighting their potential for ecological restoration in karst areas. Full article

The escalating challenge of solid waste disposal necessitates innovative recycling strategies. This study aims to constructed technosols from bulk solid wastes (fly ash, straw and sewage sludge) for the dual purpose of sustainable waste management and the rehabilitation of degraded land. Following a 150-day incubation period, six resulting technosols were systematically evaluated for aggregate stability, bacterial community structure, and biological safety to assess their viability as functional soil materials. All constructed technosols had a pH of 7.44–7.71 and were enriched in soil organic matter, nitrogen, and phosphorus. Aggregate stability (R_0.25: 46.6–64.0%) surpassed that of typical Chinese soils. Bacterial analysis revealed a stable consortium of 165 core genera, accounting for 92.93–98.11% of the total relative abundance, and were dominated by six phyla (Proteobacteria, Bacteroidota, Planctomycetota, Gemmatimonadota, Firmicutes, Actinobacteriota). The addition of straw modulated phylum structure, elevating Bacteroidota and reducing Proteobacteria. The bacterial communities exhibited clear functional hierarchy at class and order levels, with dominant groups forming a complementary carbon–nitrogen–phosphorus cycling network. Functional prediction further indicated distinct differentiation in carbon and nitrogen metabolic pathways. The technosols were non-phytotoxic and significantly enhanced the growth of Portulaca oleracea, increasing plant height (4.9–86.7%), dry weight per plant (67.3–605.4%), and SPAD values (8.1–15.9%), respectively. This study provides a sustainable strategy for repurposing solid wastes into functional technosols, aligning with circular economy principles and offering a viable solution for the ecological restoration of degraded lands such as mining areas. Full article

Using a coordinated multi-year monitoring dataset collected during the 2020–2024 partial-opening management period, we examined benthic diatom assemblages across the Sejong, Gongju, and Baekje weirs in the Geum River, Republic of Korea. Seasonal surveys at eight stations were used to evaluate spatiotemporal variation in water quality and benthic diatom community structure under this hydrological management regime. Annual basin-wide averages showed gradual interannual changes in water quality, including declines in total phosphorus, total nitrogen, chlorophyll-a, turbidity, and biochemical oxygen demand after 2021, accompanied by increased dissolved oxygen. Diatom community indices based on relative-abundance data showed corresponding temporal variation, with decreased dominance and increased Shannon diversity, evenness, and taxon richness. Ordination analyses indicated gradual differentiation between the earlier (2020–2021) and later (2022–2024) monitoring groups within the study period, whereas random forest models showed limited explanatory power and were treated as exploratory. Overall, the results support benthic diatoms as sensitive descriptors of ecological change in flow-regulated monsoonal rivers while underscoring the value of long-term monitoring where true pre-intervention biological baselines are unavailable. Full article

Schizopygopsis younghusbandi is an endemic and economically important fish in the Qinghai-Xizang Plateau, but its aquaculture is limited by harsh environmental conditions and incomplete understanding of host–microbiome–environment interactions. This study applied metagenomic sequencing to examine how different culture environments affect growth, water microbial communities, and gut microbiome network stability. Three-year-old juveniles (initial body weight 50.57 ± 1.88 g) were reared for 90 days in five systems: conventional pond (P), wetland (WL), concrete tank (G), river (R), and recirculating aquaculture system (RC). No significant differences in initial body weight or length were observed among groups (p > 0.05). Fish in the RC system achieved the highest final body weight, weight gain rate, and specific growth rate (p < 0.05), while survival rates were highest in the river and RC groups and lowest in ponds (p < 0.05). Microbial diversity and community composition differed significantly among culture modes, with bacterial and protozoan communities showing the strongest environmental responsiveness. Co-occurrence network analyses revealed that RC and G systems exhibited higher network complexity, density, and proportion of positive correlations, reflecting enhanced microbial interaction and ecological stability, whereas the WL system showed reduced network connectivity. Correlation analysis indicated that bacterial abundance was positively associated with total nitrogen, total phosphorus, and dissolved oxygen (p < 0.05), highlighting environmental regulation of microbial assemblages. Overall, the aquaculture environment shapes gut microbial networks, which closely relate to growth performance. Recirculating aquaculture systems can mitigate growth limitations in plateau fish by stabilizing the environment and reinforcing gut microbial communities, providing a sustainable strategy for high-altitude aquaculture development. Full article

Aquatic–terrestrial ecotones are highly dynamic biogeochemical hotspots where hydrological fluctuations profoundly influence microbial community structure and ecosystem functioning. However, the mechanisms underlying microbial community responses across hydrological gradients remain insufficiently understood. In this study, 16S rRNA gene sequencing was used to comparatively analyze bacterial communities in the waterward and landward zones of the drawdown area of the Danjiangkou Reservoir. The results showed that bacterial community composition differed significantly between the two zones, and waterlogging markedly increased bacterial α-diversity. Community variation was primarily associated with key environmental factors, including total phosphorus (TP), soil moisture content (SMC), and nitrate nitrogen (NO₃⁻-N). Compared with the landward zone, stochastic processes contributed more to community assembly in the waterward zone, which also exhibited higher network complexity and topological stability. In addition, several keystone taxa were identified, suggesting their potential roles in maintaining network structure and ecological stability. Functional prediction further revealed distinct metabolic potentials between zones, with enhanced anaerobic and redox-related functions in the waterward zone and predominantly aerobic metabolism in the landward zone. These findings suggest that hydrological fluctuations reshape bacterial community structure and potential ecological functions by jointly regulating water availability and nutrient dynamics. This study provides new insights into microbial ecological processes in reservoir riparian zones and offers a scientific basis for the management of aquatic–terrestrial ecotone ecosystems. Full article