Search Results (485)

Haploid breeding technology offers a promising means of significantly shortening the breeding cycle by rapidly generating homozygous inbred lines. Previous studies have shown that DMP8 is involved in haploid induction across various plant species. In this study, we performed whole-genome identification and bioinformatics analyses to investigate the evolutionary relationships, gene structures, conserved domains, and expression patterns of DMP gene family members in tomato (Solanum lycopersicum), pepper (Capsicum annuum) and eggplant (S. melongena). A total of seven, six, and eight DMP genes were identified in the genomes of tomato, pepper, and eggplant, respectively. All encoded proteins contained the DUF679 domain, and the DMP family members were clustered into three distinct groups. Collinearity analysis revealed species-specific expansions of DMP genes in the Solanaceae family. Phylogenetic analysis indicated that CaDMP8 and SmDMP8 are homologous to SlDMP8, with conserved gene and protein structures, suggesting that CaDMP8 and SmDMP8 are potential targets for developing haploid induction lines. Expression pattern analysis demonstrated that SlDMP4 and SlDMP8 are highly expressed in tomato flower tissues, suggesting their potential functional synergy. This study provides the first comprehensive insight into the evolutionary characteristics and functional diversification of the DMP gene family in Solanaceous vegetables. The findings offer a theoretical foundation for the targeted editing of DMP8 homologs to create haploid induction lines, which is critical for accelerating the genetic improvement of Solanaceous crops. Full article

In recent years, global climate fluctuation has been obvious and has had a significant impact on the food industry system, which makes the impact of climate change on the resilience of the food industry supply chain of great concern. Based on this, this paper selects the panel data of 30 provinces in China from 2011 to 2022; it takes the relationship between climate change and the toughness of the food industry supply chain as the entry point, and probes deeply into the intrinsic mechanism of the impact of climate change on the toughness of the food industry supply chain. The study found the following: First, climate change has a significant negative impact on the food industry supply chain resilience, and in climate change, the impact of temperature on the food industry supply chain resilience is significantly higher than the impact of rainfall on the food industry supply chain resilience. Second, the mechanism of the effect of climate change on food industry supply chains exhibits substantial heterogeneity between major food-producing regions and non-major food-producing ones and varies across different levels of mechanization. Third, crop diversification within the study scope remarkably mitigates the negative effect of temperature fluctuations on the resilience of the food industry supply chain. Therefore, the food supply chain system must enhance its capacity to withstand climate change, and current and future resilience should be strengthened by advancing the implementation of adaptation policies, plans, and actions that drive transformation. Full article

The cereal cyst nematode, Heterodera avena, is responsible for substantial economic losses in the global production of wheat, barley, and other cereal crops. Extracellular enzymes, particularly those from the glycoside hydrolase 18 (GH18) family, such as chitinases secreted by Trichoderma spp., play a crucial role in nematode control. However, the genome-wide analysis of Trichoderma longibrachiatum T6 (T6) GH18 family genes in controlling of H. avenae remains unexplored. Through phylogenetic analysis and bioinformatics tools, we identified and conducted a detailed analysis of 18 GH18 genes distributed across 13 chromosomes. The analysis encompassed gene structure, evolutionary development, protein characteristics, and gene expression profiles following T6 parasitism on H. avenae, as determined by RT-qPCR. Our results indicate that 18 GH18 members in T6 were clustered into three major groups (A, B, and C), which comprise seven subgroups. Each subgroup exhibits highly conserved catalytic domains, motifs, and gene structures, while the cis-acting elements demonstrate extensive responsiveness to hormones, stress-related signals, and light. These members are significantly enriched in the chitin catabolic process, extracellular region, and chitinase activity (GO functional enrichment), and they are involved in amino sugar and nucleotide sugar metabolism (KEGG pathway enrichment). Additionally, 13 members formed an interaction network, enhancing chitin degradation efficiency through synergistic effects. Interestingly, 18 members of the GH18 family genes were expressed after T6 parasitism on H. avenae cysts. Notably, GH18-3 (Group B) and GH18-16 (Group A) were significantly upregulated, with average increases of 3.21-fold and 3.10-fold, respectively, from 12 to 96 h after parasitism while compared to the control group. Meanwhile, we found that the GH18-3 and GH18-16 proteins exhibit the highest homology with key enzymes responsible for antifungal activity in T. harzianum, demonstrating dual biocontrol potential in both antifungal activity and nematode control. Overall, these results indicate that the GH18 family has undergone functional diversification during evolution, with each member assuming specific biological roles in T6 effect on nematodes. This study provides a theoretical foundation for identifying novel nematicidal genes from T6 and cultivating highly efficient biocontrol strains through transgenic engineering, which holds significant practical implications for advancing the biocontrol of plant-parasitic nematodes (PPNs). Full article

In order to develop a new environmentally friendly microbial herbicide for the field of weed control, this study used the metabolite butyl hydroxybenzoate (BP) of the HY-02 strain of Alternaria as the research object. The BP emulsion formula was determined to be a mixture of BP, methanol, and Tween-20 in a ratio of 1:1:2 g/mL. The seed germination inhibition effect, the phytotoxicity of living plants, crop safety, and the field effect of the emulsion were studied. Research has found that adding 0.75% BP emulsion to the seed culture medium inhibits the germination of weed seeds such as Amaranthus retroflexus L., Malva verticillata L. var., and Chenopodium album L. While Brassica campestris L. seeds were unaffected, Triticum aestivum L and Hordeum vulgare L. stem and leaf growth were inhibited. Cucumis sativus L., Lactuca sativa L. var. asparagina, Spinacia oleracea L., and Capsicum annuum L. seeds are significantly inhibited, with germination rates below 20%. We sprayed 0.75% BP emulsion onto live potted plants; among the weeds, the incidence of Amaranthus retroflexus L., Lepyrodiclis holosteoides, Thlaspi arvense L, Galium spurium L., Malva verticillata L. var. Crispa, Chenopodium album L., and Avena fatua L reached 100%. The Pisum sativum L. and Triticum aestivum L. crops were not affected (NS), and they had slight plant height inhibition and slight susceptibility (LS) to highland Hordeum vulgare L. and peppers. They were highly phytotoxicity to Cucumis sativus L. and Spinacia oleracea L. Some plant leaves became infected and died, with incidences of 85% and 82%, respectively. The field experiment showed that after diluting the BP emulsifiable concentrate, the seedling stage spray was inoculated into the Triticum aestivum L. field, and it was found that the BP emulsifiable concentrate at the concentration of 1.00%~0.75% had a herbicidal effect on weeds such as Chenopodium album L., Elsholtzia densa Benth, and Amaranthus retroflexus L. in the Triticum aestivum L. field, and it was safe for Triticum aestivum L. crops in the field. These results indicate that BP emulsion could be developed into a new environmentally friendly microbial herbicide for field application in grass (Triticum aestivum L. and Hordeum vulgare L.) crops. At the same time, BP’s excellent antibacterial, low-toxicity, hydrolysis, and other effects can promote diversification in herbicide development. Full article

In recent years, agriculture has increasingly faced shocks related to climate change, pathogen outbreaks, and geopolitical instability, highlighting the need for sustainable regeneration strategies. This study develops an innovative Multi-Criteria Decision-Making (MCDM) framework that integrates the Delphi method, the Analytic Network Process (ANP), and the Aggregated Decision-Making (ADAM) method—the first application of this combination in the context of agricultural regeneration. The framework was applied to the Apulia region (Italy), heavily affected by the Xylella fastidiosa epidemic, and evaluated alternative crops across 30 economic, environmental, and socio-cultural sub-criteria. Results indicate that carob, walnut, and pistachio outperform other options by combining strong economic viability, climate resilience, and cultural compatibility. To mitigate the risks of monoculture, crop diversification strategies based on high-ranked alternatives are recommended. Sensitivity analysis confirmed the robustness of results, and the framework demonstrates high scalability, offering a transparent tool for policymakers in regions facing similar agricultural crises. Full article

The diversification of cover crops grown in soils with granulometric variability may potentially enhance microbial community and enzyme activities. Thus, the main goal was to evaluate the effect of autumn/winter cover crop sequences and cash crops in spring/summer on soil microbial biomass and enzyme activities. The experiment was conducted in open-field microplots (10 m × 1 m × 0.7 m), containing soils from B horizon of five Oxisols with granulometric variability and clay content ranging from 17 to 80 dag kg⁻¹. The treatments were three cover crops and a winter fallow with a completely randomized experimental design with three replicates. Soil samples from the 0–10 cm layer were collected to analyze soil microbial biomass of carbon and nitrogen, enzyme activities of the acid phosphatase, arylsulfatase, urease, and fluorescein diacetate hydrolysis. The number of nodules in soybean roots was average 63 ± 14.42 nodules per plant and dry mass of nodules was 169 ± 13.74 mg plant⁻¹. Soybean nodulation and N uptake ensured the supply of nitrogen to the soybean plants with 331 ± 82 mg plant⁻¹. Overall, diversified autumn/winter cover crop sequences provide plant residue, containing nutrients, and different carbon/nitrogen, which alters microbial biomass, the ratio of C_mic/N_mic, basal respiration, and soil enzyme activities within each Oxisol with different particle size distribution. Full article

The LHCB gene family plays a crucial role in light harvesting and photoprotection in plants by encoding key components of the photosystem II antenna complex. The LHCB genes are also involved in salt stress. In this study, we systematically identified and characterized 16 LbaLHCB genes in the economically important medicinal plant Lycium barbarum. Comprehensive bioinformatics analyses revealed that these genes are unevenly distributed across seven chromosomes, with notable gene clustering on chromosome 11. Phylogenetic analysis classified them into seven distinct subfamilies, with the LbaLHCB1 subfamily showing significant expansion through gene duplication events. qRT-PCR and transcriptome analyses revealed tissue-specific expression patterns, with LbaLHCB1.6 exhibiting preferential expression in developing fruits, suggesting its potential involvement in fruit development and quality formation. Under salt stress conditions, the LbaLHCB genes displayed dynamic temporal responses: LbaLHCB1.5 was rapidly induced during early stress (1–3 h), LbaLHCB7 reached peak expression at mid-phase (6–12 h), while LbaLHCB1.2 showed significant downregulation during late stress response (24 h). Promoter analysis identified multiple stress-responsive cis-elements, providing molecular insights into their regulation under abiotic stress. These findings significantly advance our understanding of the LbaLHCB gene family’s structural characteristics and functional diversification in L. barbarum, particularly in relation to photosynthesis regulation and stress adaptation. The study provides valuable genetic resources for future molecular breeding aimed at improving stress tolerance and fruit quality in this important medicinal crop. Full article

Background/Objectives: Leaf sheath hairiness (LSH) is an adaptive trait in wheat that improves tolerance to biotic and abiotic stresses. Although trichome development has been extensively studied in model plants, the genetic basis of LSH in Triticeae crops remains poorly defined. Methods: In this study, the inheritance and genetic architecture of LSH were investigated. Two F₂ populations were used, derived from crosses between the glabrous lines ‘Shumai 830’ and ‘Shumai 2262’ and the hairy line ‘Zhongkelanmai 1’. BSA-seq was combined with KASP marker genotyping to map and refine the trait locus. Candidate genes were evaluated through comparative genomics; sequence variation; and subcellular localization prediction. Results: Phenotypic evaluation revealed that LSH is a dominant trait, segregating at a 3:1 ratio in F₂ populations. BSA-seq identified a major locus, QLsh.cwnu-4D, on chromosome 4DL. Fine mapping with KASP markers refined this region to a 1.67 Mb interval overlapping a 530 kb trichome-associated linkage disequilibrium block in Aegilops tauschii. Within this interval, TaSAIN1-4D, a salt-inducible protein unique to Triticeae, was identified as the strongest candidate gene. Extensive sequence variation among alleles (TaSAIN1-4Da; TaSAIN1-4Db; TaSAIN1-4Dc), including large insertions and multiple SNPs, indicated potential functional diversification. Predicted nuclear localization of TaSAIN1-4D supports a role in trichome regulation and stress adaptation. The co-dominant KASP marker K-cwnu-4D-502238348 was tightly linked to LSH and cosegregated perfectly, making it a reliable tool for marker-assisted selection. Conclusions: This study clarifies the genetic architecture of leaf sheath hairiness in wheat and identifies TaSAIN1-4D as a likely regulator. These findings provide a practical marker-assisted selection tool that can accelerate the development of improved wheat varieties with desirable leaf surface traits. Full article

This study aimed to assess the effect of organic amendment-based integrated nitrogen (N) application on major soil macronutrients, carbon (C) accumulation, crop productivity and N use efficiency (NUE) of different rice-based cropping patterns. This experiment was composed of various organic amendments ((i): control (no organic amendment, application of 100% N from urea); (ii): 25% N from compost + 75% N from urea; (iii): 25% N from cowdung + 75% N from urea; iv: 25% N from vermicompost + 75% N from urea) and rice-based cropping patterns ((i) rice–rice–rice, (ii) rice–fallow–rice–mustard, and (iii) rice–vegetables–rice). Organic amendments and soils (0–20 cm) were collected from farmers’ fields and were analyzed for major nutrients: N and organic C (OC), phosphorus (P), potassium (K) and sulphur (S). Soil OC accumulation potential, system productivity and partial factor productivity of N were also calculated. The results indicate that organic amendment application significantly enhanced soil OC (0.957–1.604%) compared to control (0.916–1.292%), with vermicompost attaining the highest OC content and OC accumulation potential (up to 24.15%), especially in the rice–vegetables–rice pattern. Vermicompost also predominantly increased N (22–62%) and S (51–78%) level in soils, while cowdung significantly amended P levels (155–178%) and contributed steadily to improved K levels in soil. Overall, nutrient improvements and soil fertility were highest under the rice–vegetables–rice system, followed by rice–fallow–mustard–rice and rice–rice–rice. System productivity was maximum in the rice–vegetables–rice pattern (up to 85.7 t ha⁻¹), with remarkable enhancements in NUE when organic amendments were applied. Cowdung and vermicompost both matched or exceeded the performance of chemical fertilizer in these cases. These results demonstrate the advantages of integrated N management and diversified cropping to improve nutrient cycling, soil health and sustainable productivity in rice-based agroecosystems. Full article

Chilling stress is a major abiotic factor that limits chili pepper (Capsicum annuum L.) cultivation by disrupting redox homeostasis, thereby impairing growth and fruit productivity. Superoxide dismutases (SODs), which catalyze the conversion of superoxide radicals into hydrogen peroxide and oxygen, serve as key components of the plant antioxidant defense system. However, the SOD gene family in chili pepper has not been comprehensively characterized. Therefore, this study aimed to characterize the SOD gene family in chili pepper and investigate their responses to chilling stress. We identified nine putative CaSOD genes and classified them into CZSOD, FeSOD, and MnSOD clades based on phylogenetic relationships and conserved domain architecture. Bioinformatic analyses revealed variation in physicochemical properties and predicted subcellular localizations, suggesting functional diversification. Transcriptome profiling indicated tissue-specific expression, with several CaSODs preferentially expressed in fruits and floral buds, while qRT-PCR analysis demonstrated that six CaSODs were transcriptionally induced under chilling stress. Functional validation in Nicotiana benthamiana leaves showed that transient expression of four selected CaSODs significantly enhanced SOD activity in an isoform-specific manner. Future studies should validate these genes across diverse chili pepper cultivars under field conditions and assess their potential for integration into breeding programs. Collectively, these findings provide new insights into the molecular and functional diversity of CaSODs, highlight their role in maintaining redox balance under chilling stress, and provide useful genetic resources for breeding stress-tolerant chili pepper and related crops. Full article

Conservation agriculture (CA) is widely recognized as the cornerstone of sustainable agriculture. It prioritizes minimizing soil disturbance, maintaining permanent soil cover, and diversifying crop species to restore soil health and ecosystem resilience. This review synthesizes the effects of CA on the soil’s physical–chemical and biological properties. It demonstrates its effectiveness in improving soil structure, enhancing organic carbon sequestration, promoting microbial activity, increasing water-use efficiency, and reducing erosion and nutrient losses. The paper then highlights the broad environmental, economic, and social benefits of CA. These include biodiversity conservation, reduced greenhouse gas emissions, improved yields, and increased food system resilience. The review explores the synergistic role of technological innovations such as precision agriculture, remote sensing, and digital tools in scaling CA for higher productivity and sustainability. The review then examines how socioeconomic conditions, institutional frameworks, and policy interventions shape CA adoption and impact. Despite its growing adoption, CA’s successful implementation will require strategies adapted for local needs, capacity-building, and supportive, inclusive policies. Finally, the review identifies key CA research gaps and future directions. This provides a comprehensive foundation to advance CA as a climate-smart, resilient, and sustainable pathway to ensure global food security and environmental stewardship. Full article

Background: Bahiagrass (Paspalum notatum), a key cultivated grass worldwide, includes both sexual diploid and apomictic tetraploid cytotypes. Finding new diploid populations is crucial for the species’ genetic improvement and conservation. Objectives: We aimed to determine the ploidy levels of 168 P. notatum accessions from subtropical South America, analyze the geographic distribution of cytotype diversity, and identify new diploid zones. Methods: Using chromosome counts and flow cytometry, we georeferenced our data with existing literature to map cytotype distribution. Results: We discovered five previously unknown diploid centers in Argentina, Brazil, and Paraguay, two of which resulted from the naturalization of diploid cultivars. One location hosted a mixed-ploidy population (diploid, tetraploid, and pentaploid), confirming ongoing hybridization. Our results show that human activity actively creates new centers of genetic diversity, serving as a dynamic source of raw material for crop resilience. These neonative diversification zones are not only of scientific interest but also vital, evolving hotspots for germplasm conservation. Conclusions: This study presents a new framework for understanding the interactions between crop and wild relatives and highlights the urgent need for conservation in the rapidly changing South American grasslands. Full article

Rice (Oryza sativa) provides a major food resource worldwide, playing an important role in the global economy. Leptocorisa acuta (Hemiptera: Alydidae), commonly known as the rice seed bug, is a major pest of paddy crops in many rice-growing regions and it is considered a potential invasive pest in the United States. Here, we investigated the genetic structure and demographic history of 18 populations sampled from China and southeast Asia using double-digest restriction site-associated DNA sequencing (ddRAD-seq). Then, we performed niche modeling based on occurrence records under current and future climate scenarios. Our analyses suggested that the lack of genetic structure among populations of L. acuta is related to recent diversification, strong flight, and dispersal capability, leading to a high level of gene flow. The demographic history was not strongly affected by the last glacial maximum. Ecological niche modeling predicts that future suitable areas will expand in Asia and America, relative to the current conditions. The ecological niche results demonstrated that L. acuta is a potentially invasive pest to the United States (mainly Florida and nearby areas) under current and future scenarios. Moreover, the moderately and highly suitable areas will increase in America (primarily located in North America, namely Florida and nearby areas, and Mexico), Central American and Caribbean countries, and some regions of South America. Some South American countries have extensive rice crops and broadly suitable habitats that may indicate a higher invasion risk. Through population genetics, our study supports the strong dispersal capacity of this insect pest and calls for vigilance against its invasion in some countries in the Americas. Full article

Heavy metal pollution is becoming increasingly severe, and cadmium (Cd) is one of the most threatening pollutants. The PCR (Plant cadmium resistance) gene encodes a class of small transmembrane proteins containing the PLAC8 motif, which confer cadmium tolerance to plants through multiple mechanisms such as efflux, compartmentalization, chelation, and antioxidant activity, and regulate fruit size and ion homeostasis. This study systematically integrated the PLAC8/PCR gene families from mosses, monocots, and dicots, revealing their structural and functional relationships, evolutionary trajectories, and functional diversification patterns through phylogenetic and motif analyses, providing a theoretical basis for cadmium-resistant breeding and environmental remediation. Future research should further integrate multi-omics and gene editing technologies to deeply elucidate the transport mechanism of the PCR protein pentamer and the functional differences of key motifs (CCXXXXCPC, CCXXCAL, and CCXXG), and conduct field trials to assess their ecological safety and crop application potential. Full article

Three wild edible plant species native to the Mediterranean region, Sanguisorba verrucosa, Eruca vesicaria, and Scorzonera laciniata, were investigated to evaluate their potential for cultivation and integration into human diets. All three species were positively rated in sensory evaluations and exhibited high levels of specific metabolites of nutritional and health-related interest. Moderate concentrations of β-carotene were found across all species. Notably, S. verrucosa and E. vesicaria contained appreciable amounts of vitamin C, and the phenolic content in S. verrucosa exceeded that of many commonly consumed vegetables. Each species also proved to be a rich source of distinct organic acids: S. verrucosa for fumaric acid, E. vesicaria for citric acid, and S. laciniata for quinic acid. Although domestication led to a reduction in several bioactive compounds, the nutritional value of these plants remains significant. The compositional and sensory profiles of these species highlight their promise as leafy vegetables for sustainable diets and as functional food ingredients. Furthermore, their cultivation could support biodiversity conservation efforts and reduce harvesting pressure on wild populations, contributing to more sustainable agricultural practices. Full article