Search Results (4,929)

Mycotoxin contamination remains a persistent threat to food safety in the Democratic Republic of the Congo (DRC) and neighboring countries, driven by conducive tropical agroecological conditions, inadequate post-harvest practices, and limited regulatory governance. This critical narrative review (2009–2024) synthesizes the occurrence data for major staple foods (maize, peanuts, cassava, sorghum, millet, and beans) and dairy products compiled from Google Scholar, ScienceDirect, MDPI and institutional sources. It examines the co-occurrence patterns, exposure pathways, and analytical and regulatory gaps. Warm, humid lowland environments favor Aspergillus and aflatoxins, whereas cooler, humid highland zones promote Fusarium, fumonisins, and deoxynivalenol. Across commodities, contamination intensifies along food value chains through inadequate drying, non-hermetic storage, insect damage, and prolonged handling, with processed products generally exhibiting the highest levels of mycotoxins. Regulated mycotoxins, including aflatoxins, fumonisins, trichothecenes, ochratoxins, and zearalenone, frequently exceed European Union (EU), East African Community (EAC), and Codex Alimentarius Commission (CAC) limits in staple foods. Their co-occurrence is widespread, including emerging mycotoxins such as beauvericin and enniatins, particularly in maize- and peanut-based products, raising concerns about potential additive or synergistic effects. Aflatoxin M1 in milk highlights plant–feed–animal–human transfer within a One Health framework. Despite increasing evidence, the available data remain fragmented and heterogeneous; rapid tests dominate, while few studies employ multi-mycotoxin LC-MS/MS methods. Cross-border trade between countries, such as Uganda, Tanzania, Zambia and Angola, facilitates the circulation of contaminated commodities in the absence of harmonized standards and risk-based controls. Priorities include harmonized regional surveillance, biomarker-based co-exposure assessment, cost-effectiveness evaluation of mitigation strategies, and regulatory alignment at borders. Coordinated, multisectoral action is essential to reduce chronic dietary exposure and improve food safety across the region. Full article

Soybean (Glycine max [L.] Merr.) is a globally important crop with a rapidly expanding body of genomics literature driven by advances in sequencing and functional genomics. Thousands of studies reference soybean genes using standardized Glyma identifiers; however, systematic analyses of how these identifiers are distributed across chromosomes in the scientific literature remain limited. Here, we present a chromosome-resolved bibliometric analysis of soybean gene mentions using a reproducible rule-based text mining approach. PubMed abstracts published between December 2006 and December 2025 were mined for standardized Glyma gene identifiers using regular-expression-based entity extraction. A total of 377 PubMed records were retrieved, of which 340 abstracts (90.2%) contained at least one Glyma gene identifier. The median number of unique genes mentioned per abstract was 1, with a maximum of 14 genes reported in a single study. Our results reveal three major patterns. First, soybean genomics research remains predominantly gene-centric, with most abstracts referencing one or two genes. Second, apparent chromosome-level disparities exist in literature representation within the subset of studies using standardized Glyma identifiers, with chromosomes 3 and 16 exhibiting the highest frequencies of unique gene mentions. A Chi-square goodness-of-fit test confirmed that these differences deviate significantly from a uniform distribution (χ² = 123.71, p < 0.001), indicating non-random patterns of gene reporting. Third, a small subset of genes dominates the literature, while the majority of annotated genes are mentioned infrequently, reflecting a long-tailed distribution of research attention. This analysis captures reporting patterns in studies that explicitly use standardized Glyma identifiers and therefore represents a defined subset of the broader soybean genomics literature. Within this scope, the findings highlight uneven adoption of standardized gene nomenclature and chromosome-level differences in research emphasis. More broadly, this study demonstrates the utility of transparent, rule-based text mining approaches for large-scale bibliometric analyses in plant science and provides a scalable framework for comparative analyses across crop species. Full article

Enterococci are widely used indicators of fecal contamination because they originate in the gastrointestinal tracts of warm-blooded animals, and species-level identification can support source attribution. This study evaluated the temporal abundance and species composition of enterococci in Quebrada Mondongo, southwestern Puerto Rico, a stream influenced by wastewater treatment plant (WWTP) effluent and nonpoint-source inputs. Five sampling campaigns for species distribution and fourteen for population quantification were conducted over approximately one year at the WWTP effluent discharge and at upstream and downstream stations. Enterococci concentrations exceeded the regulatory threshold for surface waters. Among the confirmed isolates, E. faecium dominated upstream and in the effluent, occurring approximately twofold more frequently than E. faecalis. Downstream, E. faecalis increased in relative abundance, shifting the species ratio of E. faecium/E. faecalis from 2.3–3.2 to 0.89. E. casseliflavus was detected at low frequency, and E. gallinarum was not observed. Virulence-associated genes (esp, gelE) were identified in ~75% of E. faecalis isolates, consistent with enhanced environmental persistence. Although upstream and effluent patterns reflected a strong human fecal signal, the downstream enrichment of E. faecalis suggests additional secondary inputs and/or naturalization. This study provides empirical evidence of species shifts in a tropical stream, with an increase in E. faecalis downstream of a WWTP despite E. faecium dominance in the effluent highlighting the likely influence of other nonpoint fecal sources within the watershed. Overall, these results suggest that the WWTP effluent did not contribute substantially to enterococci concentrations nor significantly influence the species composition of enterococci downstream in Quebrada Mondongo, highlighting the likely influence of other nonpoint fecal sources within the watershed. Full article

The hydrocarbon composition of liquefied PM1 aerosol samples collected using the particle into liquid system (PILS) at the Atmospheric Radiation Measurement (ARM) site of the Southern Great Plains (SGP) of the USA was analyzed in terms of organic compound composition. The results indicate that anthropogenic aliphatic compounds contributed significantly to the organic pool of PM1 fine aerosols in the ambient air of the rural area of the Southern Great Plains, with a broad range of aliphatic hydrocarbons (HCs) being the dominant organic component. The molecular markers of hopanes and steranes were generally absent or present in trace amounts in most samples, but a significant number of low-abundance hopanes and steranes were detected in only two samples, while the aromatic compounds were generally insignificant and comprised mainly low molecular weight naphthalene and its methylated derivatives. The overall composition of organic compounds and the back trajectories analysis for the sampling days suggest that the local petroleum refinery and vehicular emissions are the two major sources of the aliphatic and aromatic compounds in the fine aerosols, while plant wax may occasionally contribute a minor portion of organic matter. Furthermore, it was found that the organic composition of PM1 fine aerosol was clearly related to the ambient air temperature and suggests that the temperature is a controlling factor of organic aerosol formation. Full article

This study aimed to develop a multi-bioactive composite plant extract as an alternative to dietary antibiotics for application in animal production. Five plant materials were initially selected from 23 candidate plants via in vitro antibacterial, antioxidant, and anti-inflammatory screening, and formulated into three candidate extracts (C1, C2, C3) by orthogonal design, with respective dominant activities and moderate the other activities. Three feeding trials in mice demonstrated that administration of 1000 mg/kg C1 or C2 caused no adverse effects on hematological parameters or organ indexes. Supplementation with 250 mg/kg C1 or 125 mg/kg C2 significantly increased body weight gain and feed intake, reduced the feed-to-gain ratio, and modulated gut microbiota composition. In LPS-challenged mice, C1 and C2 restored jejunal villus height and crypt depth, downregulated the gene expression of TLR4, TNF-α, NF-κB, and IL-1β, and increased hepatic T-AOC activity while decreasing MDA content. Furthermore, a feeding trial in piglets demonstrated that dietary supplementation with 200 mg/kg C2 achieved growth performance comparable to that of conventional antibiotic supplementation, highlighting its potential as a substitute for feed antibiotics. In conclusion, this study has developed a new multi-bioactive composite plant extract that may serve as a promising alternative to feed antibiotics. Full article

Picnomon acarna (L.) Cass. is a Mediterranean medicinal plant with limited phytochemical and bioactivity characterisation. In this study, methanolic extracts obtained by maceration (MAC), Soxhlet (SOE), and ultrasound-assisted extraction (UAE) were comparatively investigated to determine their phytochemical composition and biological potential. Liquid chromatography–electrospray ionisation–tandem mass spectrometry (LC–ESI–MS/MS) analysis identified and quantified 24 phenolic compounds, with hesperidin, chlorogenic acid, and hyperoside as the dominant constituents. The maceration extract exhibited the highest total phenolic content (29.06 mg GAE/g extract) and showed superior antioxidant performance across six complementary assays [2,2-diphenyl-1-picrylhydrazyl (DPPH), 2,2′-azinobis-(3-ethylbenzothiazoline-6-sulfonic acid) (ABTS), cupric reducing antioxidant capacity (CUPRAC), ferric reducing antioxidant power (FRAP), phosphomolybdenum, and ferrous-ion chelation), reflected by the highest relative antioxidant capacity index (RACI = 0.93). Enzyme inhibition assays revealed extraction-dependent activity patterns: Soxhlet and ultrasound extracts demonstrated stronger acetylcholinesterase inhibition (IC₅₀ ≈ 1.23 mg/mL), while Soxhlet extract showed the most potent tyrosinase (AChE) inhibition (IC₅₀ = 1.48 mg/mL). α-Amylase inhibition was comparable among extracts (IC₅₀ = 1.90–2.03 mg/mL). Pearson correlation analysis indicated strong relationships between major phenolics and antioxidant activity. Molecular docking further supported these findings, showing favourable binding affinities of hesperidin, hyperoside, and chlorogenic acid toward α-amylase and acetylcholinesterase, while only chlorogenic acid and hyperoside demonstrated favourable interactions with tyrosinase-related protein-1 (TYRP1), whereas hesperidin did not exhibit a meaningful binding affinity. Overall, the results demonstrate that the extraction strategy significantly influences the phenolic composition and multi-target bioactivity of P. acarna, highlighting its potential as a source of natural antioxidant and enzyme-modulating compounds. Full article

This study investigates the impact of inoculating seeds with bacterial endophytes isolated from Vitis amurensis Rupr. on endophytic community composition in Arabidopsis thaliana (L.) Heynh. Ten bacterial isolates of the genera Agrobacterium, Bacillus, Curtobacterium, Erwinia, Frondihabitans, Gordonia, Pantoea, Pseudomonas, Sphingomonas, and Xanthomonas were applied to seeds and some visible phenotypic effects were observed on plant growth after two weeks. High-throughput sequencing of 16S rRNA revealed that the native endophytic microbiome of A. thaliana was dominated by Gammaproteobacteria, Actinomycetes, Bacteroidia, and Alphaproteobacteria. The key families were Microscillaceae, Chitinophagaceae, Rhizobiaceae, Rhodanobacteraceae, Nocardioi-daceae, Nocardiaceae, Xanthomonadaceae, Devosiaceae, Microbacteriaceae, Crocinitomi-caceae, Pseudomonadaceae, Solimonadaceae, Comamonadaceae, Caulobacteraceae, and Micrococcaceae. Arabidopsis seed inoculation with Agrobacterium sp. R8SCh-B12, Curtobacterium sp. P7SA-B3, and Gordonia aichiensis P6PL2 significantly reduced alpha diversity (Shannon index) and altered beta diversity relative to controls, indicating strong community restructuring. These three isolates, along with Pseudomonas sp. R8SCh-B2, Sphingomonas sp. RA62c-B5, Xanthomonas sp. R7SCh-B6, and Bacillus velezensis AMR25, successfully colonized the plant tissues, as evidenced by significant increases in genus-specific amplicon sequence variants, ASVs (up to 17,820-fold for Curtobacterium sp. ASV33). In contrast, Pantoea sp. P7SCH-B5, Erwinia sp. R8SCh-B3, and Frondihabitans sp. RA62c-B2 failed to colonize A. thaliana, despite being applied to the seeds, suggesting the existence of mechanisms restraining colonization. These findings demonstrate that only a subset of grapevine-derived endophytes can effectively colonize A. thaliana, and that successful colonization correlates with significant shifts in the native microbiome, even in the absence of overt phenotypic changes. This emphasizes the importance of strain-specific compatibility in plant–endophyte interactions. Thus, we report the first descriptions of several novel endophytes that colonized Arabidopsis plants and establish a convenient model to investigate plant–bacterial interactions. Full article

Wooden, nature-based barrier structures are widely implemented after wildfire in Mediterranean forests to reduce runoff connectivity and trap sediment, yet their ecological footprint on early plant recovery remains poorly quantified in Greece. We assessed two-year vascular plant recovery in forest landscapes burned during the 2021 wildfire season (Parnitha, Attica; Mavrolimni, Corinthia/Peloponnese) using repeated field surveys in 2022 and 2023. Sixteen permanent plots were established within operational rehabilitation works and assigned to the dominant structure types: wattles (brush/branch piles), contour-oriented hillslope log barriers, and channel log dams. In each year, vascular plant composition and recovery endpoints (species richness and diversity indices, density, cover, and aboveground biomass) were quantified using standardized quadrat sampling. Vegetation cover and biomass increased strongly from 2022 to 2023 at both sites, indicating rapid early reassembly. Against this dominant year effect, structure type was associated with pronounced biodiversity and compositional differences, most clearly in Parnitha where log barriers exhibited markedly reduced diversity in 2022 and community turnover patterns differed among structures. Plot-level PERMANOVA on Bray–Curtis dissimilarities calculated from log(x + 1)-transformed abundances did not detect a statistically significant structure type effect in either year (p > 0.05), whereas descriptive Bray–Curtis heatmaps suggested compositional contrasts among structure type × year combinations. Indicator–species analysis further identified a limited set of taxa associated with specific structures, suggesting provisional structure-linked microsite filtering during early assembly. By quantifying community composition and indicator taxa alongside structural recovery, this study provides operational-scale evidence that common wooden post-fire measures may be associated with early biodiversity signals in the first two years after fire, although these patterns should be regarded as provisional given the short monitoring period and limited replication. Incorporating these signals into post-fire land management can improve intervention design and placement, aligning risk reduction with biodiversity recovery in Mediterranean landscapes. Full article

Litter input, including aboveground and belowground plant residues such as leaves, branches, and roots, is a major pathway of carbon return to forest soils. The prevailing paradigm in forest carbon management emphasizes litter input as the primary driver of soil organic carbon (SOC) sequestration. Here, litter input refers specifically to experimental litter manipulation, including litter-addition and litter-removal treatments. Although numerous experimental studies have examined the effects of litter manipulation on SOC, several limitations remain. By synthesizing 1555 global observations, we demonstrate that climate zone, not litter manipulation per se, is the dominant moderator of SOC fraction responses. Litter addition significantly increased labile fractions (light fraction: +60%) but left MAOC largely unchanged. Conversely, litter removal depleted labile pools yet failed to destabilize MAOC. This universal inertia of MAOC challenges the assumption that litter management directly enhances long-term carbon stability. Furthermore, we reveal a critical climate dependency: tropical forests show attenuated carbon gains under litter addition, while temperate systems are more responsive. Our findings necessitate a paradigm shift from uniform litter-based strategies to climate-zone-specific forest management, prioritizing the protection of existing soil carbon in vulnerable biomes over indiscriminate litter augmentation. Full article

The mycoheterotrophic plant Monotropa uniflora relies on fungal symbionts for carbon and nutrient acquisition. However, its interactions with other microbial groups, beyond ectomycorrhizal fungi, remain unexplored. Here, we characterized bacterial and fungal communities associated with M. uniflora across two compartments: ectomycorrhizospheric soil linked to the mycorrhizal network and the surface-sterilized lower stem endosphere. Microbial community composition was assessed using high-throughput amplicon sequencing of the bacterial 16S rRNA gene and the fungal ITS region. Fungal richness was consistently higher in ectomycorrhizospheric soil than in the stem endosphere, whereas bacterial alpha diversity showed no consistent differences between compartments. Multivariate analyses suggested compartment-associated patterns in both bacterial and fungal community composition. Ectomycorrhizospheric soil was dominated by saprotrophic fungal taxa and bacterial groups with predicted metabolic potential, including taxa associated with iron, sulfur and nitrogen cycling. In contrast, the lower stem endosphere was enriched in bacterial taxa commonly associated with anaerobic and nitrogen-related metabolisms. Functional predictions further suggested an increase of carbon fixation-related pathways in rhizosphere-associated bacterial communities. Together, these results indicate that M. uniflora is associated with distinct and structured microbial assemblages across soil and internal plant compartments, highlighting the predicted functional potential of bacterial communities in nutrient- and carbon-related processes in mycoheterotrophic plant–soil systems alongside fungal partners. Full article

Maple (Acer spp.) seeds are potential sources of fat-soluble nutrients and bioactive compounds, yet they remain comparatively understudied. This study compared six market-derived Acer seed types by quantifying phospholipids (PLs), fatty acids, carotenoids, and phytosterols, and by evaluating total phenolic content (TPC) and DPPH radical scavenging activity in methanolic extracts. Total phospholipid contents varied markedly among samples (17.94–295.87 mg/100 g), with phosphatidylcholine (PC), phosphatidylethanolamine (PE), and phosphatidylinositol (PI) as the predominant classes. Fatty acid profiles were dominated by oleic acid (C18:1) and linoleic acid (C18:2), and nervonic acid (NA; C24:1) was consistently detected in all samples at 0.17–1.88 g/100 g (4.55–7.89% of total fatty acids). β-Sitosterol ranged from 16.58 ± 1.41 to 37.46 ± 1.62 mg/100 g. Carotenoid composition varied among the tested samples, and Jeju red maple showed the highest provitamin A potential, including the exclusive detection of α-carotene and the highest retinol activity equivalent. Antioxidant indices also differed significantly among samples (TPC: 317.89–897.12 mg GAE/100 g; DPPH: 81.37–93.27%), but TPC was not consistently proportional to DPPH activity, suggesting contributions from non-phenolic constituents. Pearson correlation analysis further showed exploratory co-variation patterns among the measured variables across the tested samples. Overall, the tested market-derived Acer seed materials exhibited marked compositional diversity and antioxidant potential, supporting their further evaluation as candidate functional food, nutraceutical, and value-added plant lipid resources. Full article

The plant-specific TCP transcription factor family plays crucial roles in morphogenesis and stress adaptation. While characterized in many species, this family remains unstudied in Punica granatum. We performed the first genome-wide analysis of the TCP family in pomegranate, identifying 24 PgTCP genes classified into the PCF, CIN, and CYC/TB1 subclades, supported by conserved gene structures and motifs. Evolutionary analysis indicated segmental duplication and purifying selection shaped this family. Expression profiling revealed distinct spatiotemporal patterns: PgTCP2/9/14/21 were highly expressed in flowers, with PgTCP21 also notably abundant in fruit tissues (seed coats and pericarp), suggesting roles in reproductive development. PgTCP19, an ortholog of the branching suppressor BRC1, showed dominant expression in dormant buds, implicating it in shoot architecture regulation. Furthermore, PgTCP5 and the miR319-targeted PgTCP22 were leaf-predominant, indicating a function in leaf development. Under abiotic stress, PgTCPs displayed dynamic, treatment-specific responses. A subset of genes was rapidly induced by cold, while PgTCP14 and PgTCP23 showed sustained upregulation during drought. Several light-responsive PgTCPs were suppressed under shading. This study provides a foundational resource, functionally classifies the PgTCP family, and identifies key candidates regulating organ development and stress resilience for future functional validation and molecular breeding in pomegranate. This work provides the first comprehensive overview of the TCP gene family in pomegranate and offers candidate genes for future functional studies related to development and stress responses. Full article

The desert ecosystem harbors a resilient microbial community that sustains plant life under extreme stress. Understanding the endophytic microbiota of desert flora provides key insights into how these microorganisms enable plant survival and maintain ecological balance in arid landscapes. To date, the endophytic bacterial communities of dominant desert plants in the Arabian Peninsula have not been comprehensively characterized. Here, we investigated the endophytic microbiota of five co-adapted desert species, namely, Schweinfurthia papilionacea, Sesuvium verrucosum, Ochtocloa compressa, Helianthemum nummularium, and Convolvulus arvensis. These plants coexist in hyper-arid habitats and exhibit exceptional tolerance to drought, salinity, and nutrient scarcity. We hypothesized that, despite their phylogenetic divergence, these plants host functionally convergent microbial communities shaped by desert selection pressures. Using 16S rRNA gene amplicon sequencing, we obtained 3.4 million high-quality reads from 25 samples. Clustering at 97% similarity revealed 35 phyla and 17 dominant genera, highlighting notable microbial richness and ecological complexity. Alpha-diversity indices showed comparable species richness across hosts, while beta-diversity indicated community differentiation driven by environmental filtering. The dominant phyla included Pseudomonadota, Actinomycetota, Cyanobacteriota, and Bacillota, reflecting microbial adaptation to extreme desert conditions. Functional pathway prediction revealed enrichment of genes associated with DNA repair and protein turnover, suggesting metabolic flexibility and enhanced survival under stress. Overall, this study provides a comparative metagenomic insight into the endophytic bacterial communities of five desert plant species, uncovering a consistent pattern of functional convergence across diverse hosts. The findings suggest the presence of shared functional traits among the endophytic microbiota examined here, offering preliminary evidence for microbial contributions to plant resilience in arid environments. Full article

Soil organic carbon (SOC) stocks in cacao agroecosystems are characterized by accumulating large amounts. They depend on the balance between organic matter inputs (plant residues, roots) and losses (decomposition, erosion), being closely related to climatic conditions, soil nature, vegetation type, topography, and land management practices. The objective of this study was to quantify SOC stocks (0–30 cm) and assess key soil fertility indicators across 107 georeferenced sampling locations in cacao production systems of Guamal (Meta, Colombian Llanos Piedmont). Soil pH varies between extremely acidic and moderately acidic (3.8–6.0; mean 4.57), while available P (Bray II) and exchangeable bases showed low concentrations. Organic carbon concentration averaged 1.18% and bulk density averaged 1.17 g cm⁻³. SOC stocks averaged 41.10 Mg C ha⁻¹, ranging from 7.49 to 81.55 Mg C ha⁻¹, evidencing marked spatial contrasts in carbon storage. Spearman correlations highlighted coupled soil chemical controls, including positive associations of pH with Ca²⁺ and P availability and strong negative associations of pH and P with exchangeable Al³⁺, consistent with acidity-driven fertility constraints. Principal component analysis (PCA) further identified a dominant fertility gradient structured by pH, P availability, and Ca²⁺, and a second axis related to organic carbon and cation retention. Spatial modeling using inverse distance weighting (IDW) in ArcGIS supported the visualization of SOC stock variability across the study area. Overall, the results indicate that SOC stocks in these predominantly sandy soils are strongly influenced by acidity-related constraints and heterogeneous nutrient status, underscoring the need for site-specific management to jointly enhance soil fertility and climate-mitigation potential in cacao systems. Therefore, it would be advisable in the future to address the study of differential variations in soil C storage related to chemical fertilizer application rates, especially in the long term. Full article

In this study, we investigated the chemical composition, antimicrobial and antibiofilm activities, and cytotoxicity of Thuja occidentalis L. (thuja) and Myrtus communis L. (myrtle) essential oils (EOs) to evaluate their potential as natural alternatives for topical applications. Thuja EOs were extracted from fresh and dried leaves and cones, while myrtle EO was extracted from fresh leaves. GC-MS analysis revealed that myrtle EO was rich in oxygenated monoterpenes (58.2%), predominantly eucalyptol (41.86%) and α-pinene (20.98%). In contrast, thuja EOs were dominated by monoterpene hydrocarbons (55–82%), with α-pinene as the major component (29–66%), and their composition varied markedly with plant organ and moisture state. Myrtle EO displayed the most potent and broad-spectrum antimicrobial activity, with MIC values as low as 3.096 µL/mL against Staphylococcus aureus and Escherichia coli, and effectively inhibited microbial adherence. Thuja EOs showed selective activity, particularly against Gram-positive bacteria and Candida parapsilosis, with EOs extracted from fresh leaves and cones exhibiting the lowest MICs (1.95–7.8 µL/mL). All EOs did not show cytotoxicity to human keratinocytes at concentrations ≤125 µg/mL and, when diluted to 0.05%, indicated excellent skin compatibility in human patch tests. This study suggests that myrtle and thuja EOs, particularly myrtle, are promising and safe natural antimicrobial agents for dermatological and cosmetic formulations. Full article