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Keywords = gastroendoscopy

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14 pages, 262 KiB  
Article
Investigating Associations between HLA-DR Genotype, H. pylori Infection, and Anti-CagA IgA Seropositivity in a Turkish Gastritis Cohort
by Lokman Karataş, Zeynep Tatar, Eddie A. James and Mukaddes Colakogullari
Genes 2024, 15(3), 339; https://doi.org/10.3390/genes15030339 - 6 Mar 2024
Viewed by 2012
Abstract
Helicobacter pylori (H. pylori) is associated with gastric inflammation and mucosal antibodies against its cytotoxin-associated gene A (CagA) are protective. Vaccine-elicited immunity against H. pylori requires MHC class II expression, indicating that CD4+ T cells are protective. We hypothesized that the [...] Read more.
Helicobacter pylori (H. pylori) is associated with gastric inflammation and mucosal antibodies against its cytotoxin-associated gene A (CagA) are protective. Vaccine-elicited immunity against H. pylori requires MHC class II expression, indicating that CD4+ T cells are protective. We hypothesized that the HLA-DR genotypes in human populations include protective alleles that more effectively bind immunogenic CagA peptide fragments and susceptible alleles with an impaired capacity to present CagA peptides. We recruited patients (n = 170) admitted for gastroendoscopy procedures and performed high-resolution HLA-DRB1 typing. Serum anti-CagA IgA levels were analyzed by ELISA (23.2% positive) and H. pylori classified as positive or negative in gastric mucosal tissue slides (72.9% positive). Pearson Chi-square analysis revealed that H. pylori infection was significantly increased in DRB1*11:04-positive individuals (p = 0.027). Anti-CagA IgA was significantly decreased in DRB1*11:04 positive individuals (p = 0.041). In contrast, anti-CagA IgA was significantly increased in DRB1*03:01 positive individuals (p = 0.030). For these HLA-DRB1 alleles of interest, we utilized two in silico prediction methods to compare their capacity to present CagA peptides. Both methods predicted increased numbers of peptides for DRB1*03:01 than DRB1*11:04. In addition, both alleles preferred distinctively different CagA 15mer peptide sequences for high affinity binding. These observations suggest that DRB1*11:04 is a susceptible genotype with impaired CagA immunity, whereas DRB1*03:01 is a protective genotype that promotes enhanced CagA immunity. Full article
(This article belongs to the Section Molecular Genetics and Genomics)
14 pages, 1652 KiB  
Article
Pre-Cancerous Stomach Lesion Detections with Multispectral-Augmented Endoscopic Prototype
by Alexandre Krebs, Yannick Benezeth, Thomas Bazin, Franck Marzani and Dominique Lamarque
Appl. Sci. 2020, 10(3), 795; https://doi.org/10.3390/app10030795 - 22 Jan 2020
Cited by 7 | Viewed by 3582
Abstract
In this paper, we are interested in the in vivo detection of pre-cancerous stomach lesions. Pre-cancerous lesions are unfortunately rarely explored in research papers as most of them are focused on cancer detection or conducted ex-vivo. For this purpose, a novel prototype [...] Read more.
In this paper, we are interested in the in vivo detection of pre-cancerous stomach lesions. Pre-cancerous lesions are unfortunately rarely explored in research papers as most of them are focused on cancer detection or conducted ex-vivo. For this purpose, a novel prototype is introduced. It consists of a standard endoscope with multispectral cameras, an optical setup, a fiberscope, and an external light source. Reflectance spectra are acquired in vivo on 16 patients with a healthy stomach, chronic gastritis, or intestinal metaplasia. A specific pipeline has been designed for the classification of spectra between healthy mucosa and different pathologies. The pipeline includes a wavelength clustering algorithm, spectral features computation, and the training of a classifier in a “leave one patient out” manner. Good classification results, around 80%, have been obtained, and two attractive wavelength ranges were found in the red and near-infrared ranges: [745, 755 nm] and [780, 840 nm]. The new prototype and the associated results give good arguments in favor of future common use in operating rooms, during upper gastrointestinal exploration of the stomach for the detection of stomach diseases. Full article
(This article belongs to the Special Issue Computer-aided Biomedical Imaging 2020: Advances and Prospects)
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