Search Results (1,467)

The SHAGGY-like kinase (SK) gene family regulates diverse developmental and abiotic stress response processes in plants. Although genome-wide analyses of SKs have been conducted in model plants such as Arabidopsis thaliana and rice, their characterization in the economically important crop Brassica rapa remains limited. In this study, we conducted a systematic genome-wide analysis of SK genes in three Brassica species. A total of 18, 16, and 18 SK members were identified in B. rapa, B. nigra, and B. oleracea, respectively, and phylogenetic analysis classified them into four distinct clades. Expression profiling revealed that BrSKβ-1 and BrSKβ-2 were specifically expressed in fertile floral buds, suggesting their critical roles in pollen development. Furthermore, co-expression analysis indicated that both genes were co-expressed with key regulators involved in pollen development, pollen sperm cell differentiation and pollen tube growth. Loss of BrSKβ-2 via CRISPR/Cas9 resulted in 25–65% pollen abnormality and reduced the germination rate of normal-appearing pollen to only 10%, confirming its essential role in male fertility. Together, these findings provide a comprehensive characterization of the SK gene family in Brassica and position BrSKβ-2 as a promising candidate for gene editing-based male sterility systems in B. rapa and related crops. Full article

Background: Zangqing ‘1127’, a hull-less barley type recognized for its high β-glucan content, holds significant agricultural and nutritional potential. Nonetheless, the molecular mechanisms underlying the degradation of β-glucan during barley germination have yet to be thoroughly investigated. Objectives: This study sought to identify the key proteins and pathways involved in this process using quantitative proteomics. Methods: Seeds of Zangqing ‘1127’ were collected at 0, 24, and 96 h post germination, and TMT-based quantitative proteomics was used to analyze changes in the proteome. To annotate the functions of differentially expressed proteins (DEPs), Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses were performed. Results: In total, 3230 unique proteins were identified, which included 610 DEPs during the germination phase. Enrichment analysis showed that these DEPs were primarily associated with key biological processes involved in β-glucan degradation, including cell wall modification, polysaccharide metabolism, and carbon metabolism. Five proteins exhibiting notably high expression levels were identified as potential regulatory candidates for this process. Conclusions: These results enhance our comprehension of the proteomic dynamics associated with β-glucan degradation during barley germination and suggest new candidate targets for functional studies. This study provides deeper insight into the molecular mechanisms governing β-glucan metabolism, with potential implications for agricultural improvement and the nutritional quality of barley. Full article

This study aimed to evaluate the effects of adding sludge generated in water treatment plants on the composting of sewage sludge, urban organic waste, and agroindustrial waste. Four treatments were conducted with different proportions of water treatment plant sludge (WTS). Four treatments were conducted with 0%, 10%, 20%, and 30% proportions of WTS. The different proportions allowed for the evaluation of the effects of WTS addition on composting. The study was carried out in composting reactors. Kinetic models were applied to study the degradation of organic matter. Physicochemical and microbiological parameters were analyzed. During the process, temperature variation and basal respiration exhibited similar patterns. Principal component analysis showed that the 30WTS (32.2% water treatment sludge) treatment presented higher values of cation exchange capacity (CEC)/total organic carbon (TOC) ratio (3.83), and germination index (94.35%), and lower values of TOC (23.67%) and C/N (carbon/nitrogen) ratio (14.45). The composts produced in all treatments complied with Brazilian regulations for the environmental and agronomic quality of organic composts. It was concluded that the inclusion of up to 30% of WTS in composting did not negatively affect the composting process and did not compromise the environmental or agronomic quality of the final organic composts. Full article

Ultrasound-assisted germination (UAG) has emerged as a process intensification strategy to enhance seed performance while improving resource efficiency. In this study, a multiphysics framework combining thermoacoustic modeling with experimental validation was developed to investigate resonance-driven UAG in Cucurbita pepo. Frequency-domain analysis identified 40 kHz as the resonance condition of the seed–fluid system, enabling spatial localization of acoustic energy. Simulations showed that temperature remained below 46 °C across all exposure times, excluding bulk thermal effects and supporting a predominantly mechanical activation mechanism. Experimental treatments (40 kHz, 1.5 MPa, 5–25 min) revealed a non-linear germination response. The optimal condition (10 min) increased final germination from ∼20% to 46.8% and reduced the time to steady state from 13 to 10 days. Statistical analysis confirmed significant improvements for treatments between 10 and 25 min ($p<0.001$), while 5 min showed no effect. Longer exposures did not produce proportional gains, indicating a finite acoustic energy window. Because daily water (0.45 L·day⁻¹) and electrical (0.438 kWh·day⁻¹) consumption remained constant, shorter process duration reduced cumulative resource demand. The optimal treatment decreased water use by 1.35 L (23.1%) and energy consumption by 1.29 kWh (22.7%). When normalized per germination output, energy and water requirements decreased by ∼67%. These results demonstrate that integrating resonance-based multiphysics modeling with experimental validation enables rational optimization of UAG, providing a scalable and resource-efficient strategy for controlled-environment agricultural systems. Full article

Modern agriculture faces significant challenges, such as population growth, the reduction in productive agricultural land, and, most importantly, climate change. To address these issues, non-thermal plasma treatment of seeds and plants has emerged as a promising alternative to conventional chemical-based methods. This advanced technology, a powerful chemical reactor in the gas phase, has various applications, from stimulating seed germination and plant growth to controlling pathogens. The effects of non-thermal plasma on seeds include morphological and chemical changes in the seed coat, increased permeability and water uptake, and the activation of some internal biochemical mechanisms. Studies have demonstrated improvements in germination, plant development, and the activation of internal biochemical mechanisms with the intensified production of secondary metabolites. Non-thermal plasma also contributes to reducing the microbial load, providing an effective and environmentally friendly method of disinfection. This review synthesises the current knowledge on non-thermal plasma sources used in plasma agricultural applications for seed treatments, emphasising that in some cases the exposure of seeds to such discharge stimulates germination and also promotes early seedling growth. In addition, it highlights reported biochemical and nutraceutical improvements, including changes in antioxidant capacity, phenolic content and other bioactive compounds which add considerable value to the resulting plants. Finally, the decontamination potential is discussed, along with results discussing the potential of NTP to decontaminate seeds, associated with an extension to the shelf-life of products and identifying key challenges and research gaps for implementing this technology in agricultural practices. The integration of this technology into modern agriculture, including vertical farms and hydroponic systems, opens up the prospect for more sustainable and productive agriculture. However, scaling up the process and optimising processing parameters remain important challenges that require further attention, research and technological development. Full article

Soil salinity remains a major constraint to rice productivity, particularly during early developmental stages when plants are highly sensitive to osmotic and ionic stress. In this study, we evaluated 201 genetically diverse rice genotypes from the 3K Rice Diversity Panel to investigate stage-specific mechanisms of salinity tolerance and develop machine learning-based predictive models for rapid phenotypic screening. Morphological and physiological traits were measured under control and saline conditions at germination and early seedling stages to derive Stress Tolerance Indices (STIs). The average membership function value (AMFV), calculated from multi-trait STI profiles, effectively captured variation in salinity responses and enabled classification of genotypes into five tolerance categories. Genome-wide association analysis using high-density SNP markers identified 36 significant marker–trait associations, including potentially novel SNPs on chromosomes 1 and 12. Several loci co-localized with candidate genes (LTR1, LGF1, OsCPS4, OsNCX7, and OsNHX4), while functional SNPs within genes (OsDRP2C, RLCK168, and OsMed37_2) and non-synonymous variants (qSVII11.1 and qSNaK3.1) further supported their candidacy in salinity tolerance. Mining favourable SNPs of causal genes identified superior multilocus combinations consistent with STI-based phenotypic patterns, with genotype 91-382 emerging as the strongest performer, exhibiting enhanced Na⁺ exclusion, K⁺ retention, and biomass resilience across developmental stages. To address multicollinearity among STI traits, we applied cross-validated LASSO (germination) and Elastic Net (early seedling) models, achieving high predictive accuracy and revealing a developmental shift from biomass-driven tolerance at germination to ion-regulatory processes at the seedling stage. Independent validation showed strong agreement between predicted and observed AMFVs. By integrating physiological indices, GWAS-derived SNP signals, and regularized machine learning approaches, this study provides a robust framework for identifying elite donors and accelerating breeding for salt-tolerant rice. Full article

Apple pomace represents an important agro-industrial residue with high moisture content and significant environmental burden if improperly managed. This study investigated its thermochemical valorisation into biochar via two processes, followed by comprehensive physicochemical characterization and agronomic evaluation. Elemental analysis revealed carbon enrichment from 47.89% in raw material to 77–78% after the thermal process, evidencing a progressive aromatization. Scanning electron microscopy, Fourier transform infrared spectroscopy, and Raman analysis confirmed a temperature-dependent transition from partially amorphous carbon (400 °C) to more ordered aromatic structures (450 °C), while excessive thermal treatment (550 °C) increased structural defects. ICP-OES revealed an enrichment in thermally stable metals (Fe, Al, Mn) and limited Cd accumulation. Germination assays using Triticum aestivum L. demonstrated that biochar produced at 400 °C significantly improved the germination uniformity and seedling height (14.1 mm), as well as biomass accumulation compared to the control soil sample. The fertilizer addition increased the soluble Na and electrical conductivity (up to 643 µS/cm), potentially inducing transient salinity stress. Soil chemical analysis indicated increased K availability in soils amended with biochar produced at 400 °C, whereas the combination of biochar obtained at 450 °C with fertilizer conducted to elevated concentrations of certain trace metals, mainly Ni and Cr, highlighting the demand for careful monitoring. Overall, the biochar produced at 400 °C yielded to an optimal balance between structural stability, nutrient enrichment, and agronomic performance, evidencing that apple pomace may be a viable feedstock for sustainable biochar production within circular bioeconomy frameworks. Full article

Since 2007, green tides have recurrently occurred in the Yellow Sea during spring and summer, with a massive outbreak recorded in 2021. Given the critical significance of green tide monitoring and prediction for marine ecological security and sustainable development, this study developed a satellite remote sensing-validated coupled simulation system for green tide drift and growth, by integrating multi-source satellite remote sensing data and oceanographic reanalysis datasets. Leveraging this system, we systematically analyzed the spatiotemporal evolution characteristics and underlying driving mechanisms of both routine green tide processes in 2014–2015 and the extreme 2021 event. Satellite images with low cloud cover and extensive green tide distribution were screened to confirm the accuracy of green tide drift trajectories and distribution ranges for validating the model’s reliability, and the results demonstrated the spatial consistency between simulation results and satellite observations. The validated model was used to track the drift and growth–decline processes of green tides and investigate the underlying cause of high-biomass appearance in 2021. Combined with environmental parameters, our analyses revealed that variations in attachment substrates alter wind resistance coefficients, thereby potentially accelerating the northward drift velocity of green tides. Furthermore, substrate properties may exert a significant regulatory effect on the attachment, germination, and biomass accumulation of Ulva prolifera spores, which could be a leading factor driving the massive green tide outbreak. Full article

Programmed cell death (PCD) is a pivotal biological process that occurs at various stages of plant development, including embryogenesis and seed germination. This study investigated whether the absence of PCD in endosperm cells is connected to the poor germination of Viola odorata seeds. Seeds of poorly germinating V. odorata and well-germinating V. × wittrockiana were either cold-stratified for 10 days or left untreated. Germination tests, tetrazolium viability tests, Western blot analyses for caspase-like proteases, and Terminal deoxynucleotidyl transferase (TdT) dUTP nick end labeling (TUNEL) assays for DNA strand break detection were performed. The results revealed that V. odorata seeds did not germinate, regardless of stratification or lack thereof, whereas in V. × wittrockiana, stratification significantly increased their germination capacity (34 ± 6.5% vs. 56.5 ± 9.8% in non-stratified and stratified seeds, respectively). The tetrazolium viability test revealed that V. odorata seeds were nonviable (100% nonviable endosperm and 96% nonviable embryos in total), whereas the seeds of V. × wittrockiana were highly viable (63% and 59% endosperm and embryos in total, respectively). Western blot analysis revealed that in the germinating seeds of V. × wittrockiana, caspase-like activity was detected in the endosperm but not in the embryos, whereas in seeds that failed to germinate, the PCD signal in the endosperm was very weak. In the seeds of V. odorata, caspase-like activity was detected in the embryos and endosperm collected directly after 10 days of stratification, but no signal was detected in the seeds left to germinate for one month after cold stratification. TUNEL assays revealed DNA strand breaks in the peripheral part of the endosperm in V. odorata and in non-germinating V. × wittrockiana, whereas in the germinating seeds of V. × wittrockiana, DNA strand breaks were detected in the endosperm cells adjacent to the embryo. These findings indicate that endosperm-localized PCD facilitates nutrient mobilization to the embryo and seems crucial for successful germination. Overall, these results suggest that PCD contributes to the regulation of seed germination in Viola spp. Full article

White mold caused by Sclerotinia sclerotiorum (Lib.) de Bary continues to threaten yield and quality and remains a stubborn, sometimes unpredictable constraint in many cropping systems. The pathogen’s broad host range and its capacity to persist for years as sclerotia mean that fields can carry risk long after visible symptoms fade. Disease development is often driven by short windows of favorable temperature and moisture that promote germination and ascospore release and dispersal, while myceliogenic infection from soil-borne sclerotia can also initiate disease directly. Yet dependable control is still undermined by durable inoculum, limited stable host resistance, variable biocontrol performance, and shrinking chemical options together with fungicide resistance risk. Here we consolidate current understanding and ongoing uncertainties around sclerotial formation and germination cues, the environmental drivers that shape epidemic onset, and the processes governing host colonization, including the roles of cell wall-degrading enzymes, oxalic acid, and redox regulation, as well as the continuing debate over necrotrophic versus hemibiotrophic phases. Management is considered from a practical perspective, covering cultural risk reduction, forecasting-guided fungicide programmes supported by resistance-management principles, and biological control strategies targeting sclerotia. Across systems, the evidence points to the same lesson: single tactics rarely remain reliable under field variability, whereas integrated packages that reduce soil inoculum and align interventions with risk are more durable. Future priorities include resolving early infection events, improving prediction of carpogenic germination under changing climates, increasing the consistency of biocontrol, and accelerating resistance breeding supported by genomic resources. Full article

Amid growing concerns about climate change and its potential impacts on food security and malnutrition, there is a need for climate-smart crops to help mitigate these challenges. African yam bean (Sphenostylis stenocarpa) and Bambara groundnut (Vigna subterranea) are considered climate-smart neglected or underutilised species (NUS) in sub-Saharan Africa (SSA). These legumes are rich in nutrients, comprising fats, carbohydrates, and protein, as well as essential micronutrients. However, their use is constrained by the presence of antinutritive factors (ANFs) such as oxalates, tannins, and phytates, which reduces mineral bioaccessibility and protein digestibility. Fermentation provides a cost-effective means of effectively reducing these antinutrients, thereby making these crops more mainstream due to their enhanced bioavailability and bioactivity. This review summarises the impact of diverse microbes and fermentation techniques on the bioavailability of essential nutrients in Bambara groundnut and African yam bean. The importance of pre-treatment steps such as soaking, germination, dehulling, and thermal treatment will also be discussed. By synthesising recent studies, the review explores the mechanisms by which fermentation degrades the ANFs, enhances nutrient bioavailability and improves protein digestibility from these crops. This review explores the pivotal roles of fermenting microbes, such as species of Lactobacillus and Bacillus, during the process of biotransformation. Full article

Salinity is a major constraint on lettuce (Lactuca sativa L.) production and is known to inhibit seed germination. However, the physiological and biochemical processes underlying this sensitivity remain unclear. Therefore, this study aimed to investigate how salinity affects seed germination in two lettuce cultivars, ‘Susan’ (a highly salt-sensitive cultivar) and ‘Yafa’ (a low salt-sensitive cultivar), with particular emphasis on the roles of catalase and endo-β-mannanase enzyme activities. Seeds were subjected to both low salinity (0, 0.1, 0.2, 0.3, 0.5, 1, 3, and 5 mM NaCl) and high salinity (0, 10, 20, 40, 80, 160, and 320 mM NaCl) under standard germination conditions to evaluate germination percentage, mean germination time, and enzyme activity. Seedling emergence was also assessed in different growing media, including perlite, sand, peatmoss, and cocopeat. The results showed that salinity significantly reduced germination percentage and seedling length and increased mean germination time, with inhibition occurring at ≥0.1 mM NaCl in ‘Susan’ and ≥40 mM NaCl in ‘Yafa’; both cultivars failed to germinate at 320 mM. The ’Yafa’ had a high seedling emergence in all growing media, but ’Susan‘ seeds only emerged in perlite, which had the lowest salinity. Catalase activity increased markedly under salt stress, particularly in ‘Susan,’ indicating elevated oxidative burden, while endo-β-mannanase activity declined with increasing salinity, especially in the highly salt-sensitive cultivar of ‘Susan’. Correlation analysis showed that germination percentage had a significant and positive correlation with endo-β-mannanase activity and had a significant and negative correlation with catalase activity across salinity levels. In conclusion, salinity-induced inhibition of lettuce seed germination appears to be associated with changes in antioxidant enzyme activity and reduced endosperm weakening capacity, as reflected by altered catalase and endo-β-mannanase activities, thereby contributing to cultivar-dependent differences in salt sensitivity. Full article

Pollen development is a complex process that is highly sensitive to environmental stresses. Abscisic acid (ABA), a key hormone mediating plant growth and stress responses, has been implicated in the regulation of sexual reproduction, especially pollen development, yet its precise regulatory role remains unclear. This study investigated the effects of exogenous ABA on Arabidopsis thaliana pollen development and function through integrated phenotypic, cytological, and transcriptomic approaches. ABA treatment specifically impaired pollen function by reducing germination rates and inhibiting pollen tube elongation, which resulted in shortened siliques and decreased seed set, without affecting pollen morphology or viability. Transcriptome analysis of mature anthers revealed a transient and time-dependent transcriptional response, with the number of differentially expressed genes (DEGs) peaking at 8 h post-ABA treatment and markedly declining by 22 h. These DEGs were enriched in stress-response pathways (e.g., salt, cold, and dehydration), hormone signaling, and carbohydrate metabolism. Moreover, we identified 25 differentially expressed transcription factors and 16 pollen development and function-related genes, highlighting their key roles in ABA-mediated regulation. In parallel, 146 differentially expressed lncRNAs (DELs) were identified, which formed 144 cis-regulatory pairs with genes involved in ABA response and pollen tube growth, with their predicted targets enriched in pathways such as hormone and MAPK signaling, carbohydrate metabolism and stress response. Trans-regulatory analysis further revealed that these DELs co-expressed with DEGs in modules enriched for stress response, pollen development, and tube growth pathways. Notably, key pollen function genes showed strong co-expression with DELs, indicating that lncRNAs participate in ABA-induced transcriptional reprogramming that shifts metabolic resources from growth to defense, thereby suppressing pollen germination and tube elongation. Together, these findings elucidate a coordinated regulatory network involving mRNAs, lncRNAs and transcription factors roles in modulating ABA responses during pollen/anther development. Full article

There is a growing demand for sustainable crop strategies that reduce the use of agrochemicals while improving productivity. This study investigates distillation residues of Salvia rosmarinus to develop a novel biostimulant with enhanced antifungal activity, together with natural additives that ensure homogeneity and water dispersibility. Accordingly, several residual by-products released from agroforestry processes and regarded as “plant protection products” were evaluated in phytotoxicity tests in seeds of Lactuca sativa and Lolium perenne. The tested substances included solvents (ethanol, glycerol, propylene glycol, and DMSO) and adjuvants (soy lecithin, polysorbate-20, acetic acid, and ascorbic acid). Those showing the lowest adverse effects were combined with the extract following a 3² factorial design. Most formulations exhibited good water dispersibility and significantly enhanced the germination index of Lactuca sativa, while simultaneously reducing the growth of Lolium perenne and the fungus Aspergillus flavus, all in a clear dose–response manner, as suggested by the four-parameter log-logistic (log₁₀(x)) models. These results indicate that both stimulatory and inhibitory effects were strongly influenced by concentrations, highlighting the importance of optimizing application doses. Among the evaluated carriers, the one lacking glycerol and containing high ratios of polysorbate-20 and soy lecithin demonstrated the most balanced overall performance in terms of physical stability, dispersibility, and biological activity, a response that can be attributed to the combined contribution of the extract and the selected carrier components. Overall, this study demonstrates that bioagrochemicals derived from agroforestry by-products can provide dual-function agricultural applications (biostimulant/antifungal or herbicide/antifungal), while supporting the framework of the circular bioeconomy. Full article

Phosphogypsum (PG) has the potential to elevate phosphorus levels in compost; however, it may also retard the composting maturation process, and its underlying mechanism for phosphorus activation remains unclear. In this study, sawdust was mixed with pig manure or chicken manure at a ratio of 1:4 (m:m, fresh weight) and added 10% PG as the treatment group, and added no PG as control treatment. The entire composting process lasts for 60 days. During the composting process, temperature was monitored daily, pH, electrical conductivity (EC), germination index (GI), phosphorus and its distribution were measured to monitor the composting process, and bacterial communities and predict phosphate-solubilizing genes and bacteria through the KEGG database. Pearson correlation analysis between phosphate-solubilizing bacteria and phosphorus components was conducted. The results demonstrated that (1) PG supplementation delayed the temperature rise and humification during composting, yet the final compost maturity was maintained (GI ≈ 90%). (2) PG addition increased the abundance of the ppx-gppa and phoR genes in pig manure compost, while enhancing the phnE and phoP genes in chicken manure compost. (3) In pig manure composting, Dietzia and Clostridium sensu stricto_1 were identified as key bacteria responsible for phosphorus activation, and promoting their growth favored phosphorus mobilization. (4) In chicken manure compost, Lactobacillus and Pseudomonas played crucial roles in phosphorus activation, though inhibiting their growth was found to enhance phosphorus availability. Overall, PG addition promoted phosphorus activation in compost, significantly increasing the NaHCO₃-P content in both pig manure and chicken manure composts (by 9.36 and 17.86 percentage points, respectively). Full article