Search Results (959)

The morphological traits of Vaccinium uliginosum L., including plant height, leaf area, and fruit weight, have changed significantly across an elevational gradient in the Changbai Mountains. To elucidate the molecular mechanisms underlying these morphological variations, RNA-Seq technology was employed to identify differentially expressed genes (DEGs), key metabolic pathways, and associated biological functions of V. uliginosum at seven elevations in the Changbai Mountains. A total of 1190 DEGs significantly associated with morphological variations were identified. These genes are mainly involved in lipid synthesis, carbohydrate metabolism, energy metabolism, and signal transduction. Redundancy analysis (RDA) revealed that fatty acyl-ACP thioesterase B (FATB) and ribulose-bisphosphate carboxylase small subunit (cbbS) exhibited a significant association with morphological variation. Integrated analysis indicated that high-altitude plants likely enhance lipid synthesis and cell wall stability while also inhibiting photosynthesis and carbohydrate metabolism. The regulatory mechanisms underlying hormone signal transduction may be relatively complex, as evidenced by the enhanced activity of gibberellin and reduced biological effects of auxin, abscisic acid, and ethylene. This study is the first to provide transcriptomic evidence elucidating the genetic basis of altitudinal morphological adaptation in V. uliginosum, integrating phenotypic traits with gene expression profiles across an elevational gradient. Full article

Arbuscular Mycorrhizal Fungi (AMF) can form symbiotic relationships with most plants. They can alleviate the toxic effects of heavy metals on plants. This study analyzed the effects of AMF (Diversispora versiformis, D.v.) on the physiological responses and root organic acid secretion of tomato (Solanum lycopersicum L.) under cadmium (Cd) stress, in order to elucidate how AMF enhance Cd tolerance. The results indicated that when the AMF inoculation rate of tomato seedlings ranged from 26.75% to 38.23%, the AMF treatment significantly promoted tomato growth. Cd significantly reduced the agronomic traits of tomato. However, AMF inoculation dramatically lowered the Cd level from 19.32 mg/kg to 11.54 mg/kg in tomato roots, and effectively reduced the negative effect of Cd toxicity on seedling growth. Cd stress also significantly reduced the chlorophyll fluorescence parameters, chlorophyll contents, and photosynthetic intensity parameters in seedling leaves, while the AMF treatment significantly increased these indicators. Under Cd stress, the AMF treatment significantly increased the activities of SOD, POD, and CAT, and reduced the levels of reactive oxygen species and the contents of osmotic regulatory substances in roots. Under Cd stress conditions, the AMF treatment also significantly increased the auxin level (57.24%) and reduced the abscisic acid level (18.19%), but had no significant effect on trans-zeatin riboside and gibberellin contents in roots. Cd stress markedly reduced the content of malic acid and succinic acid by 17.28% and 25.44%, respectively; however, after the AMF inoculation, these indicators only decreased by 2.47% and 2.63%, respectively. Under Cd stress, AMF could increase tomato roots’ antioxidant capacity to reduce ROS level, thereby alleviating the toxicity induced by ROS and maintaining reactive oxygen metabolism, enhancing the plant’s stress resistance. In summary, the AMF treatment enhances the osmotic regulation capacity and maintains the stability of cell membranes by reducing the levels of osmotic regulatory substances in roots. It also enhances the Cd tolerance of tomato plants by regulating the contents of root hormones and aerobic respiration metabolites, among other pathways. Therefore, inoculating plants with AMF is a prospective strategy for enhancing their adaptive capacity to Cd-polluted soils. Full article

Pre-harvest sprouting (PHS) reduces the quality and quantity of crop seeds. PHS can be imposed through the embryo or husk pathway of cereal crops. Most reported PHS seeds are imposed via the embryo pathway. Here, we generated transgenic rice plants overexpressing rice melatonin 2-hydroxylase (OsM2H), which catalyzes the hydroxylation of melatonin to 2-hydroxymelatonin (2-OHM). OsM2H overexpression (M2H-OE) showed PHS under paddy conditions. Germination assays revealed that intact seeds harvested at 26 and 36 days after heading (DAH) showed PHS, whereas dehusked seeds did not, indicating husk-imposed PHS. Overproduction of 2-OHM was observed in M2H-OE seeds compared to wild-type control. In addition, M2H-OE lines produced more hydrogen peroxide than the wild-type. 2-OHM-induced reactive oxygen species resulted in the induction of OsGA3ox2, a gibberellin (GA) biosynthesis gene, and repression of OsGA2ox3, a GA degradation gene, in caryopses at 2 DAH, but in the induction of the ABA degradation gene OsABA8ox3 in intact seeds at 26 DAH. In addition, M2H-OE seedlings were longer and showed increased levels of hydrogen peroxide and OsGA3ox2 expression versus the wild-type. This is the first report showing that 2-OHM can induce PHS via the husk pathway in rice seeds through the induction of GA biosynthetic and ABA degradation genes. Full article

Jujube (Ziziphus jujuba Mill.) is an important economic fruit tree in China, and its in vitro culture technology is the key to achieving large-scale seedling cultivation. PGRs (Plant growth regulators) play a central regulatory role in all stages of jujube micropropagation, including explant initiation, proliferation, and rooting. This article provides a comprehensive overview of recent advances in in vitro culture of jujube, with a focus on the recommended exogenous phytohormone ratios, their effects, and underlying regulatory mechanisms across distinct varieties during the key stages such as in vitro culture, shoot proliferation, and root formation. The primary culture of most jujube varieties usually employs the MS medium, and it is recommended that auxin and cytokinin be used in combination. During the initial cultivation stage, the use of NAA (1-naphthaleneacetic acid) or IBA (indole butyric acid) is recommended at concentrations ranging from 0.1 to 1.0 mg/L. At the same time, 6-BA (6-benzylaminopurine) is suggested, with a concentration range of 0.5 to 2.5 mg/L. In the subculture multiplication of most jujube varieties, MS medium is used, and auxin (such as NAA, IBA), and TDZ (thidiazuron) and cytokinin (e.g., 6-BA) are used in combination. The recommended concentration range for auxin remains between 0.1 and 1.0 mg/L, and for cytokinin 6-BA between 0.5 and 2.5 mg/L, while the recommended concentration of TDZ is suggested to be below 0.01 mg/L. Rooting induction for most jujube varieties has predominantly been achieved using 1/2 MS medium, with growth regulator concentrations typically ranging from 0.5 to 3.0 mg/L. Full article

Plant growth regulators Gibberellin A3 (GA₃) and N-(2-chloro-4-pyridyl)-N′-phenylurea (CPPU) are widely used in ‘Shine Muscat’ cultivation to regulate berry shape and size. However, the molecular mechanisms underlying their regulation of berry shape remain poorly understood. This study was designed to elucidate the cytological processes and molecular basis through which GA₃ and CPPU modulate berry morphology in ‘Shine Muscat’. The results showed that spraying GA₃ or CPPU alone increases the hormone levels of endogenous auxin (IAA) and GA₃ and reduces the levels of endogenous 6-benzyladenine (6-BA). GA₃ treatment resulted in the number of cells per unit area being significantly reduced and the cell transverse and longitudinal diameters being significantly increased. CPPU treatment increases the number of cells per unit area, cell transverse and longitudinal diameters. In the results of CKvsG2 and CKvsC2 transcriptome sequencing, 2793 and 1082 differentially expressed genes (DEGs) were identified, respectively. These DEGs are significantly enriched in Gene Ontology (GO) terms related to plant hormones; the Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis revealed that the zeatin biosynthesis pathway (ko03030) is significantly enriched. The Arabidopsis response regulator (ARR) is down-regulated in response to GA₃ application and up-regulated in response to CPPU application. Transient overexpression of VvARR (OE-VvARR) in ‘Shine Muscat’ berry increased the number of berry cells and cell transverse and longitudinal diameters. Furthermore, virus-induced gene silencing of VvARR (VIGS-VvARR) reduced the number of berry cells but increased cell transverse and longitudinal diameters. The OE-VvARR grape hormone levels of endogenous GA₃, 6-BA, and IAA were significantly increased. In VIGS-VvARR grape, the levels of endogenous IAA and 6-BA are significantly increased, but there is no significant difference in endogenous GA₃. These findings offer novel insights into the molecular mechanisms by which GA₃ and CPPU govern berry development, corroborating the hypothesis that VvARR acts as a pivotal regulator mediating the effects of these plant growth regulators on berry cell morphology and, consequently, berry shape. Full article

Spinach is a dioecious vegetable and an excellent model for investigating plant sex differentiation. Exogenous gibberellin treatment induced sepal hypoplasia and sex reversal, converting 42% of stamens into pistils in male plants. Transcriptome analysis identified 112 male-biased genes enriched in stamen and pollen development, while hormone profiling revealed coordinated changes in GA, cytokinins, auxin, jasmonic acid, and abscisic acid. Functional assays demonstrated that silencing SpAMS or SpPGIP caused extensive carpelization, and in situ hybridization localized their expression to developing anthers. Dual-luciferase assays confirmed that SpAMS directly activates the B-class gene SpPI, and genomic mapping placed SpAMS in the pseudo-autosomal region of the Y chromosome. These results indicate that GA disrupts hormonal homeostasis and anther wall integrity, while the SpAMS–SpPI pathway regulates tapetal development to maintain male identity. Our findings identify SpAMS as a key male-promoting factor in spinach and provide a framework for elucidating sex determination mechanisms in dioecious plants. Full article

This study investigated the isolation and formulation of a bacterial conditioner as a biostimulant for Triticum durum (durum wheat) under salinity stress. An Algerian alkaline–saline soil was sampled, characterized for its physical and chemical characteristics and its culturable and total microbial community (16S rRNA gene metabarcoding). Three bacterial strains showing high 16S rRNA gene similarity to Pseudomonas putida, Bacillus proteolyticus, and Niallia nealsonii were selected for their plant growth-promoting (PGP) traits under different salinity levels, including phosphate solubilisation (194 µg mL⁻¹), hormone production (e.g., gibberellin up to 56 µg mL⁻¹), and good levels of hydrocyanic acid, ammonia, and siderophores. N. nealsonii maintained high indole production under saline conditions, while B. proteolyticus displayed enhanced indole synthesis at higher salt concentrations. Siderophore production remained stable for P. putida and N. nealsonii, whereas for B. proteolyticus a complete inhibition was registered in the presence of salt stress. The consortium density and application were tested under controlled conditions using Medicago sativa as a model plant. The effective biostimulant formulation was tested on Triticum durum under greenhouse experiments. Bacterial inoculation significantly improved plant growth in the presence of salt stress. Root length increased by 91% at 250 mM NaCl. Shoot length was enhanced by 112% at 500 mM NaCl. Total chlorophyll content increased by 208% at 250 mM NaCl. The chlorophyll a/b ratio increased by 117% at 500 mM. Also, reduced amounts of plant extracts were necessary to scavenge 50% of radicals (−22% at 250 mM compared to the 0 mM control). Proline content increased by 20% at both 250 mM and 500 mM NaCl. These results demonstrate the potential of beneficial bacteria as biostimulants to mitigate salt stress and enhance plant yield in saline soils. Full article

Lycoris longituba produces a single flower bearing six tepals. The double-petaled phenotype of L. longituba has gained significant interest in China due to its ornamental and commercial value in tourism industries. This double-petal phenotype, characterized by stamen petalization, shows improved esthetic characteristics compared with conventional single-petal form. However, the molecular mechanisms underlying this floral trait remain largely undefined. In this study, RNA-based comparative transcriptomic analysis was performed between single- and double-petaled flowers of L. longituba at the fully opened flower stage. Approximately 13,848 differentially expressed genes (DEGs) were identified (6528 upregulated and 7320 downregulated genes). Functional annotation through Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses revealed several DEGs potentially involved in double-petal development. Six candidate genes, including the hub genes LlbHLH49, LlNAC1, LlSEP, LlTIFY, and LlAGL11, were identified based on DEG functional annotation and weighted gene co-expression network analysis (WGCNA). Transcription factors responsive to phytohormonal signaling were found to play a pivotal role in modulating double-petal development. Specifically, 123 DEGs were involved in phytohormone biosynthesis and signal transduction pathways, including those associated with auxin, cytokinin, gibberellin, ethylene, brassinosteroid, and jasmonic acid. Moreover, 521 transcription factors (TFs) were identified, including members of the MYB, WRKY, AP2/ERF, and MADS-box families. These results improve the current understanding of the genetic regulation of the double tepal trait in L. longituba and offer a base for future molecular breeding strategies to enhance ornamental characteristics. Full article

Storage quality and texture properties determine the processing quality of sweet potato (Ipomoea batatas Lam.). Prohexadione calcium (Pro-Ca) and uniconazole (UCZ) are plant growth regulators that inhibit gibberellin biosynthesis, reducing excessive sweet potato growth and improving stress resistance. This study evaluated the impact of foliar applications—applied at 37.5 g·hm⁻² for both treatments—on the postharvest texture characteristics and storage performance of sweet potato storage roots. The experiments were conducted over two years (2023 and 2024) using two sweet potato cultivars, Zheshu13 (Z13) and Wanshu10 (W10). The results showed that Pro-Ca significantly improved the textural properties of sweet potatoes, including firmness, chewiness, and maximum adhesion force, especially in Z13 (p < 0.05). Pro-Ca also reduced the percentage of rotting and weight loss during storage (p < 0.05), offering a more sustainable option for sweet potato postharvest management compared to UCZ. Additionally, Pro-Ca treatment increased the soluble sugar content of Z13-2023 and W10-2024, as well as the amylose content, except for W10 (p < 0.05), which could enhance both the sweetness and texture of sweet potatoes. This study highlights the potential of Pro-Ca as an effective growth regulator for improving sweet potato storage and processing quality. Further research is needed to investigate the long-term effects and the molecular mechanisms underlying these benefits, particularly in relation to gibberellin inhibition, carbohydrate metabolism, and cell wall integrity during storage. Full article

As the only harvest organ of pepper, fruit size is an important yield determinant. To elucidate the molecular mechanisms underlying pepper fruit size, we performed histological, physiological, and transcriptomic analyses on the pepper varieties QB6 (large fruit) and CXJ82 (small fruit). High contents of auxin and cytokinin in the early stage of fruit development promoted the rapid division of fruit cells in both varieties, which provided sufficient cells for subsequent fruit enlargement. High gibberellin accumulation induced the elongation and expansion of QB6 pericarp cells. Transcriptome analysis showed that genes related to cell division, cell wall polysaccharide degradation, and photosynthesis were highly expressed in QB6 fruit, likely contributing to its larger size. In the hormone–signal transduction factor–gene interaction network, GID6, GID1, IAA12, MYC30, and SAUR36 exhibited high correlations with numerous genes related to cell division, the cell wall, and photosynthesis, emerging as key signal transduction factors for the hormone-mediated regulation of pepper fruit size. Weighted gene co-expression network analysis identified the transcription factors OFP20, HD-ZIP6, and HD-ZIP13 as fundamental for pepper fruit size regulation. Our results expand the understanding of hormone regulation of pepper fruit size, providing a foundation for the breeding and improvement of excellent pepper varieties. Full article

Disorders in soybean seed-filling can lead to wrinkled seeds, affecting yield and quality. Previous studies have demonstrated that some soybean cultivars from Jiamusi, Heilongjiang Province (cold-temperate continental monsoon, ~3.5 °C mean annual temperature, ~530 mm precipitation) exhibit seed-filling disorders when cultivated in Shenyang, Liaoning Province (mid-temperate semi-humid continental monsoon, ~8.3 °C, ~610 mm). However, the causes and regulatory mechanisms remain unclear. In this study, Henong 76 (a soybean cultivar with seeds less prone to wrinkling) and Heihe 43 (a soybean cultivar with seeds prone to wrinkling) were used as experimental materials. They were sown simultaneously in Jiamusi and Shenyang, respectively, to explore the causes of seed-filling disorders in Heihe 43. The results indicated that there were significant differences in the contents of soluble sugars and starch, as well as in the activities of sucrose synthase and invertase, between the seeds of Henong 76 and Heihe 43 grown in Shenyang. However, no significant differences were found between them in Jiamusi. Transcriptomic and metabolomic analyses suggested that genes related to controlling starch hydrolysis (isoamylase, α-amylase, and glycogen phosphorylase) and sucrose synthesis and decomposition (sucrose synthase, invertase, glucose-6-phosphate isomerase, and phosphoglucomutase) in Heihe 43 were upregulated in Shenyang. In contrast, genes regulating plant hormone signal transduction (auxin, gibberellin, abscisic acid, and cytokinin) were generally downregulated. These changes led to differences in metabolites, resulting in the occurrence of seed-filling disorders. Furthermore, we analyzed the climatic conditions of the two cultivars during the soybean seed-filling period. The results indicated that high temperature might be the primary meteorological factor contributing to the occurrence of seed-filling disorders. All results indicated that the insufficient accumulation of sugars in seeds due to exposure to high temperatures during the seed-filling period is the primary cause of the prone-to-wrinkling phenomenon of the Heihe 43 cultivar under the ecological conditions of Shenyang. Full article

A pluripotent callus is central to genetic transformation in Cinnamomum parthenoxylon; however, the molecular and cellular mechanisms regulating callus formation and subsequent differentiation remain unelucidated, hindering progress in its genetic improvement. This study systematically investigated the dynamic changes during the in vitro regeneration of C. parthenoxylon through morphological observations, physiological assays, and transcriptomic analyses, while comparing differences in callus formation under varying induction conditions to elucidate the mechanism of its high-efficiency regeneration. The results showed that the formation of a pluripotent callus is a critical step in C. parthenoxylon regeneration, characterized by the presence of highly proliferative cell zones. Compared to an ordinary callus (P3C), a pluripotent callus (P3) exhibited higher activities of polyphenol oxidase (PPO) and indole-3-acetic acid oxidase (IAAO), as well as elevated levels of zeatin riboside (ZR) and abscisic acid (ABA). In contrast, P3 showed lower levels of soluble sugars, soluble proteins, malondialdehyde (MDA), indole-3-acetic acid (IAA), and gibberellins (GA), a reduced IAA/ZR ratio, and diminished peroxidase (POD) activity. Weighted gene co-expression network analysis (WGCNA) identified 27 hub transcription factors (TFs) strongly associated with IAA/ZR, primarily from the ERF, bHLH, MYB, WRKY, and C3H families. Gene Ontology (GO) and the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses revealed the significant enrichment of differentially expressed genes (DEGs) related to plant hormone signal transduction and cell wall metabolism during pluripotent callus acquisition. Further investigations revealed that five genes encoding a putative indole-3-acetic acid-amido synthetase GH3.1, protein TIFY 10A, a two-component response regulator ARR2-like isoform X2, and xyloglucan endotransglucosylase/hydrolase, likely promoting callus pluripotency by modulating plant hormone signaling and cell wall metabolism, thereby enhancing in vitro regeneration in C. parthenoxylon. In summary, this study provides critical insights into the molecular mechanisms of C. parthenoxylon regeneration and offers valuable germplasm resources for establishing an efficient and stable genetic transformation system via tissue culture. Full article

Strawberry propagation relies predominantly on asexual reproduction via runner plants, making runners a critical organ for cultivation. Runners develop from axillary buds under specific environmental conditions. While long-day photoperiods and higher temperatures are key factors for inducing runner formation in most strawberry varieties, certain everbearing cultivars exhibit enhanced runner formation even under short-day conditions. Gibberellin (GA) is indispensable for runner bud outgrowth, with cytokinin and auxin synergistically regulating runner outgrowth. Genetically, GA biosynthesis genes strongly influence runner formation. Transcription factors such as LAM, SOC1, and HAN have recently been identified as key regulators. However, the genetic control of runner formation in strawberries, especially for cultivated octoploid strawberry cultivars, is not yet fully elucidated. This review synthesizes current knowledge on the environmental and genetic regulation of strawberry runner induction, providing a theoretical foundation for artificial control of runner formation. Full article

Achieving high yield while maintaining disease resistance is a crucial goal in rice breeding programs. In this research, two cultivated rice varieties, Jia58 and Runxiang3, were selected as parental lines. A new variety, designated as the new variety RXN2, was generated and identified through a breeding process that involved hybridization of the parental lines followed by irradiation-induced mutagenesis of the offspring. Compared with its parental lines, RXN2 shows increased plant height, higher yield, and stronger resistance to bacterial blight. Comprehensive transcriptomic and metabolic analyses indicate that pathways associated with growth, such as gibberellin and auxin signaling, are upregulated in RXN2. Meanwhile, defense-related pathways, especially those involving jasmonic acid and peroxidase metabolism, are significantly enhanced. These results provide new insights into the trade-offs between growth and defense and elucidate the genetic and metabolic underpinnings of the simultaneous improvement in grain yield and disease resistance in rice. Full article

Grain shape is a critical determinant of rice yield, quality, and market value. Recent advances in molecular biology, genomics, and systems biology have revealed a complex regulatory network governing grain development, integrating genetic loci, plant hormone signaling, transcriptional regulation, protein ubiquitination, epigenetic modifications, and environmental cues. This review summarizes key genetic components such as QTLs, transcription factors, and hormone pathways—including auxin, cytokinin, gibberellin, brassinosteroids, and abscisic acid—that influence seed size through regulation of cell division, expansion, and nutrient allocation. The roles of the ubiquitin–proteasome system, miRNAs, lncRNAs, and chromatin remodeling are also discussed, highlighting their importance in fine-tuning grain development. Furthermore, we examine environmental factors that impact grain filling and size, including temperature, light, and nutrient availability. We also explore cutting-edge breeding strategies such as gene editing, functional marker development, and wild germplasm utilization, along with the integration of multi-omics platforms like RiceAtlas to enable intelligent and ecological zone-specific precision breeding. Finally, challenges such as pleiotropy and non-additive gene interactions are discussed, and future directions are proposed to enhance grain shape improvement for yield stability and food security. Full article