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Search Results (1,230)

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Keywords = habitat mapping

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27 pages, 17255 KB  
Article
Spatial Prioritization for the Zonation of a Reef System in a New Remote Marine Protected Area in the Southern Gulf of Mexico
by Juan Emanuel Frías-Vega, Rodolfo Rioja-Nieto, Erick Barrera-Falcón, Carlos Cruz-Vázquez and Lorenzo Alvarez-Filip
Diversity 2025, 17(10), 708; https://doi.org/10.3390/d17100708 (registering DOI) - 13 Oct 2025
Abstract
Coral reef ecosystems are biodiversity hotspots that provide essential ecological and environmental services but are increasingly threatened by anthropogenic pressure and climate change. Effective conservation of reef systems within Marine Protected Areas (MPAs) can be enhanced using spatially explicit approaches that integrate habitat [...] Read more.
Coral reef ecosystems are biodiversity hotspots that provide essential ecological and environmental services but are increasingly threatened by anthropogenic pressure and climate change. Effective conservation of reef systems within Marine Protected Areas (MPAs) can be enhanced using spatially explicit approaches that integrate habitat mapping and ecological metrics at seascape scales. In this study, we characterized the benthic seascape of Cayo Arenas and identified optimal priority conservation zones in one of the core zones of the recently established Southern Gulf of Mexico Reefs National Park (SGMRNP). In July 2023, ground-truthing was performed to quantify the cover of sand, calcareous matrix, macroalgae, hard corals and octocorals. Cluster analysis of quantitative data and ecological similarity between classes was used to identify the main benthic habitat classes. Object-based and supervised classification algorithms on a PlanetScope image were used to construct a thematic map of the benthic reef system. Based on the thematic map, habitat connectivity, β-diversity, patch compactness, and availability for commercial species were estimated. In addition, a benthic change analysis (2017–2013), based on the spectral characteristics of PlanetScope images, was performed. The layers obtained were then used to perform an iterative weighted overlay analysis (WOA) using 126 combinations. Six main habitat classes, with different coverages of hard corals, calcareous matrix, macroalgae, and sand, were identified. Habitats with calcareous matrix and sandy substrates dominated the seascape. High habitat compactness, connectivity, and β-diversity values were observed, suggesting habitat stability and ecologically dynamic areas. Based on the WOA, eight optimal priority areas for conservation were recognized. These areas are characterized by heterogeneous habitats, moderate coral cover, and high connectivity. We provide a spatially explicit approach that can strengthen conservation planning within the SGMRNP and other MPAs, particularly by assisting zonation and sub-zonation processes. Full article
19 pages, 7284 KB  
Article
Histological and Macromolecular Characterization of Folliculogenesis in Loggerhead Sea Turtles (Caretta caretta): Novel Insights into the Onset of Puberty
by Ludovica Di Renzo, Erica Trotta, Valentina Notarstefano, Laura Zonta, Elisabetta Giorgini, Luca Marisaldi, Giulia Mariani, Gabriella Di Francesco, Silva Rubini, Marco Matiddi, Cecilia Silvestri, Yakup Kaska, Giulia Chemello and Giorgia Gioacchini
Int. J. Mol. Sci. 2025, 26(20), 9934; https://doi.org/10.3390/ijms26209934 (registering DOI) - 12 Oct 2025
Abstract
The Adriatic Sea is a critical neritic habitat for juvenile and adult female loggerhead sea turtles (Caretta caretta), where intense anthropogenic pressures and environmental stressors may influence their reproductive biology. Knowledge on the onset of puberty in this population is limited [...] Read more.
The Adriatic Sea is a critical neritic habitat for juvenile and adult female loggerhead sea turtles (Caretta caretta), where intense anthropogenic pressures and environmental stressors may influence their reproductive biology. Knowledge on the onset of puberty in this population is limited by scarce information on the sub-adult stage, a transitional phase in which reproductive competence is acquired. This study integrated histological analysis and Fourier-transform infrared (FTIR) imaging spectroscopy to provide both structural and biochemical characterization of folliculogenesis, with emphasis on vitellogenesis, in C. caretta from the north-central Adriatic Sea. Histological analysis determined the progression of follicle development, while FTIR imaging, a label-free and spatially resolved technique, mapped the distribution of proteins, lipids, and nucleic acids across ovarian compartments. Logistic regression estimated the size at which 50% of females are sexually mature (L50) at 58.54 cm Curved Carapace Length (CCL). Based on this value, 60% of sub-adult females were already mature, indicating earlier puberty than previously inferred from macroscopic criteria. These preliminary results, along with reports of sporadic nesting in the Adriatic, raise the question of whether this basin may host further nesting events in the future. FTIR imaging proved to be a powerful tool for reproductive biology in non-model marine vertebrates. Full article
(This article belongs to the Special Issue A Molecular Perspective on Reproductive Health, 2nd Edition)
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22 pages, 4943 KB  
Article
Novel Wall Reef Identification Method Using Landsat 8: A Case Study of Microcontinent Areas in Wangiwangi Island, Indonesia
by Wikanti Asriningrum, Azura Ulfa, Edy Trihatmoko, Nugraheni Setyaningrum, Joko Widodo, Ahmad Sutanto, Suwarsono, Gathot Winarso, Bachtiar Wahyu Mutaqin and Eko Siswanto
Geosciences 2025, 15(10), 391; https://doi.org/10.3390/geosciences15100391 - 10 Oct 2025
Viewed by 78
Abstract
This study develops a geomorphological identification methodology for wall reefs in the microcontinental environment of Wangiwangi Island, Indonesia, using medium-resolution Landsat 8 satellite imagery and morphological analysis based on Maxwell’s geomorphological framework. The uniqueness of the wall reef landform lies in the fact [...] Read more.
This study develops a geomorphological identification methodology for wall reefs in the microcontinental environment of Wangiwangi Island, Indonesia, using medium-resolution Landsat 8 satellite imagery and morphological analysis based on Maxwell’s geomorphological framework. The uniqueness of the wall reef landform lies in the fact that the lagoon elongates on limestone, resulting in a habitat and ecosystem that develops differently from those of other shelf reefs, namely, platform reefs and plug reefs. Using Optimum Index Factor (OIF) optimization and RGB image composites, four reef types were successfully identified: cuspate reefs, open ring reefs, closed ring reefs, and resorbed reefs. A field check was conducted at fifteen observation sites, which included measurements of depth, turbidity, and water quality parameters, as well as an in situ benthic habitat inventory. The analysis results showed a strong correlation between image composites, geomorphological reef classes, and ecological conditions, confirming the successful adaptation of Maxwell’s classification to the Indonesian reef system. This hybrid integrated approach successfully maps the distribution of reefs on a complex continental shelf, providing an essential database for shallow-water spatial planning, ecosystem-based conservation, and sustainable management in the Coral Triangle region. Policy recommendations include zoning schemes for protected areas based on reef landform morphology, strengthening integrative monitoring systems, and utilizing high-resolution imagery and machine learning algorithms in further research. Full article
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18 pages, 12948 KB  
Article
Optimal Phenology Windows for Discriminating Populus euphratica and Tamarix chinensis in the Tarim River Desert Riparian Forests with PlanetScope Data
by Zhen Wang, Xiang Chen and Shuai Zou
Forests 2025, 16(10), 1560; https://doi.org/10.3390/f16101560 - 10 Oct 2025
Viewed by 160
Abstract
The desert riparian forest oasis, dominated by Populus euphratica and Tamarix chinensis, is an important barrier to protect the economic production and habitat of the Tarim River Basin. However, there is still a lack of high-precision spatial distribution data of desert ri-parian [...] Read more.
The desert riparian forest oasis, dominated by Populus euphratica and Tamarix chinensis, is an important barrier to protect the economic production and habitat of the Tarim River Basin. However, there is still a lack of high-precision spatial distribution data of desert ri-parian forest species below 10 m. The recently launched PlanetScope CubeSat constella-tion, which provides daily earth observation imagery with a resolution of 3 m, offers a highly favorable dataset for mapping the high-resolution distribution of P. euphratica and T. chinensis and an unprecedented opportunity to explore the optimal phenology window to distinguish between them. In this study, time-series PlanetScope images were first used to extract phenological metrics of P. euphratica, dividing the annual life cycle into four phenology windows: duration of leaf expansion (DLE), duration of leaf maturity (DLM), duration of leaf fall (DLF), and duration of the dormancy period (DDP). The random forest model was used to obtain the classification accuracy of 16 phenological window combinations. Results indicate that after gap filling of vegetation index time series, the identification accuracy for P. euphratica and T. chinensis exceeded 0.90. Among individual phenology windows, the DLE window exhibited the highest classification accuracy (average F1-score 0.87). Among the two phenology window combinations, the DLE-DLF and DLE-DLM windows have the highest classification accuracy (average F1-score 0.90). Among the three phenology window combinations, DLE-DLM-DLF displayed the highest classification accuracy (average F1-score 0.91). Nevertheless, the inclusion of features within the DDP window led to a decrease in accuracy by 1–2% points, which was unfavorable for discriminating tree species. Additionally, features observed during the phenology asynchrony period were found to be more valuable for distinguishing between tree species. Our findings highlight the potential of PlanetScope constellation imagery in tree species classification, offering guidance for selecting optimal image acquisition timing and identifying the most valuable images within time series data for future large-scale tree mapping. Full article
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40 pages, 5213 KB  
Systematic Review
Forest Ecosystem Conservation Through Rural Tourism and Ecosystem Services: A Systematic Review
by Jing Peng, Jiangfeng Li, Liu Peng and Yuzhou Zhang
Forests 2025, 16(10), 1559; https://doi.org/10.3390/f16101559 - 10 Oct 2025
Viewed by 257
Abstract
This systematic review examines the role of rural tourism in promoting sustainable development, focusing on its interaction with forest ecosystems and the essential ecosystem services they provide. A comprehensive literature search across Scopus, PubMed, and Google Scholar identified 142 peer-reviewed articles, analyzed through [...] Read more.
This systematic review examines the role of rural tourism in promoting sustainable development, focusing on its interaction with forest ecosystems and the essential ecosystem services they provide. A comprehensive literature search across Scopus, PubMed, and Google Scholar identified 142 peer-reviewed articles, analyzed through qualitative synthesis and bibliometric mapping. The review highlights four thematic clusters in rural tourism research: impacts on rural areas, destination management, resident perspectives and cultural sustainability, and emerging themes like place attachment. It emphasizes the reliance of rural tourism on ecosystem services, including provisioning, regulating, cultural, and supporting, especially those linked to forest ecosystems. Examples from Monteverde, Costa Rica, and Tuscany, Italy, illustrate the role of rural tourism in supporting biodiversity conservation, habitat restoration, and sustainable agriculture. However, uncontrolled tourism in forested regions can lead to deforestation and ecosystem degradation, as seen in the Lake District, Masai Mara, and Rajasthan. The review stresses the need for sustainable practices to mitigate the negative impacts of tourism, advocating for an integrated sustainability framework that balances economic, environmental, and governance aspects. Best practices include eco-friendly infrastructure, community participation, and environmental education. The potential of emerging technologies, such as eco-certification systems and smart tourism, is explored to reduce the environmental footprint of tourism. The review calls for stronger policy integration, equitable benefit-sharing, capacity building, and longitudinal research to ensure resilient rural tourism that harmonizes ecosystem conservation with socio-economic development. In conclusion, the integration of sustainable practices and community involvement is crucial for aligning rural tourism with forest ecosystem conservation. Full article
(This article belongs to the Section Forest Ecology and Management)
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22 pages, 1223 KB  
Article
Assessing the Maturity Level of Socio-Technical Contexts Towards Green and Digital Transitions: The Adaptation of the SCIROCCO Tool Applied to Rural Areas
by Vincenzo De Luca, Mariangela Perillo, Carina Dantas, Almudena Muñoz-Puche, Juan José Ortega-Gras, Jesús Sanz-Perpiñán, Monica Sousa, Mariana Assunção, Juliana Louceiro, Umut Elmas, Lorenzo Mercurio, Erminia Attaianese and Maddalena Illario
Green Health 2025, 1(3), 16; https://doi.org/10.3390/greenhealth1030016 - 9 Oct 2025
Viewed by 133
Abstract
The NewEcoSmart project addresses the need to foster inclusive green and digital transitions in rural habitat sectors by systematically assessing local socio-technical readiness and tailoring capacity-building interventions. We adapted the validated SCIROCCO Exchange Maturity Self-Assessment Tool—selecting eight dimensions relevant to environmental, technological and [...] Read more.
The NewEcoSmart project addresses the need to foster inclusive green and digital transitions in rural habitat sectors by systematically assessing local socio-technical readiness and tailoring capacity-building interventions. We adapted the validated SCIROCCO Exchange Maturity Self-Assessment Tool—selecting eight dimensions relevant to environmental, technological and social innovation—and conducted a two-phase evaluation across three pilot sites in Italy, Portugal and Spain. Phase 1 mapped stakeholder evidence against predefined criteria; Phase 2 engaged local actors (45+ adults, SMEs and micro-firms) in a self-assessment to determine digital, green and entrepreneurial skill gaps. For each domain of the SCIROCCO Tool, local actors can assign a minimum of 0 to a maximum of 5. The final score of the SCIROCCO tool can be a minimum of 0 to a maximum of 40. Quantitative maturity scores revealed heterogeneous profiles (Pacentro and Majella Madre = 5; Yecla = 10; Adelo Area = 23), underscoring diverse ecosystem strengths and limitations. A qualitative analysis, framed by Smart Healthy Age-Friendly Environments (SHAFE) domains, identified emergent training needs that are clustered at three levels: MACRO (community-wide awareness and engagement), MESO (decision-maker capacity for strategic planning and governance) and MICRO (industry-specific practical skills). The adapted SCIROCCO tool effectively proposes the assessment of socio-technical maturity in rural contexts and guides the design of a modular, multi-layered training framework. These findings support the need for scalable deployment of interventions that are targeted to the maturity of the local ecosystems to accelerate innovations through equitable green and digital transformations in complex socio-cultural settings. Full article
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27 pages, 5598 KB  
Article
Spawning Habitat Partitioning of Sympatric Salmonid Populations in the Upper Bois Brule River, Wisconsin
by Benjamin T. Schleppenbach, Thomas R. Hrabik, Daniel D. McCann, Karen B. Gran and Greg G. Sass
Fishes 2025, 10(10), 506; https://doi.org/10.3390/fishes10100506 - 8 Oct 2025
Viewed by 150
Abstract
Spawning habitat partitioning can be important for maintaining sympatric fish species. Likewise, critical spawning habitat loss may challenge the long-term persistence of sympatric fish species. The Bois Brule River, Wisconsin, USA, is a spring-fed, western Lake Superior tributary that supports five naturally reproducing [...] Read more.
Spawning habitat partitioning can be important for maintaining sympatric fish species. Likewise, critical spawning habitat loss may challenge the long-term persistence of sympatric fish species. The Bois Brule River, Wisconsin, USA, is a spring-fed, western Lake Superior tributary that supports five naturally reproducing populations of salmonids (native brook trout Salvelinus fontinalis; introduced brown trout Salmo trutta, rainbow trout Oncorhynchus mykiss, coho salmon O. kisutch, and chinook salmon O. tshawytscha). Given increases in recreational angler use and predicted climate-associated changes to trout stream habitat, a better understanding of species interactions during spawning is important to guide future management and conservation of these anthropogenically derived sympatric native and introduced salmonids. Our aim was to establish whether there was partitioning or overlapping in the redd site location preferences among native and introduced salmonids inhabiting the Bois Brule River. We mapped species-specific redd locations by canoe over a 15.3 river km section known to be important for salmonid spawning and evaluated physical, flow, and thermal conditions of these habitats of the Bois Brule River during 2021–2022. We found that spring spawning rainbow trout and fall spawning pacific salmonids and brown trout used the same spawning locations on mid-channel, larger gravel reefs downstream of riffle sections. Native brook trout spawned on smaller substrates with lower streamflow on the edges of the channel, with the highest spawning activity occurring in littoral areas of lentic portions of the river. Our findings provide valuable knowledge of critical spawning habitats for sympatric salmonids that may inform habitat conservation and enhancement efforts in the Bois Brule River and other Great Lakes tributaries with similar sympatric, naturally reproducing salmonids populations. Full article
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13 pages, 1936 KB  
Article
Drought and Suboptimal Habitats Shape Norway Spruce Vulnerability to Bark Beetle Outbreaks in Białowieża Forest, Poland
by Wojciech Kędziora, Katarzyna Szyc, Joaquim S. Silva and Roman Wójcik
Land 2025, 14(10), 2014; https://doi.org/10.3390/land14102014 - 8 Oct 2025
Viewed by 197
Abstract
Norway spruce (Picea abies (L.) Karst.) is experiencing large-scale decline across Central Europe, with climate warming and bark beetle (Ips typographus L.) outbreaks as primary drivers. In lowland Białowieża Forest, Poland, spruce occupies a range of habitats that differ in their [...] Read more.
Norway spruce (Picea abies (L.) Karst.) is experiencing large-scale decline across Central Europe, with climate warming and bark beetle (Ips typographus L.) outbreaks as primary drivers. In lowland Białowieża Forest, Poland, spruce occupies a range of habitats that differ in their suitability for long-term persistence. We hypothesized that climate change accelerates spruce decline by reducing resilience in suboptimal habitats and increasing susceptibility to bark beetle outbreaks, with long-term persistence limited to optimal hydrological sites. To address this, we analysed spruce share from 1902–2018, its distribution across suitable versus unsuitable habitats, and long-term climate records in relation to outbreaks. Historical maps, forest site classifications, and meteorological data were used to calculate hydro-climatic indices (HTC, SPEI-12, Selyaninov), and outbreak relationships were tested using Welch’s t-test and point-biserial correlation, including lag effects. Spruce share increased from 12% in 1902 to 27% in 2015 and then declined to 9% by 2018. In 2015, 75% of spruce-dominated stands occurred in unsuitable habitats. Bark beetle outbreaks were significantly associated with drought, with outbreak years showing lower precipitation (–121 mm), reduced Selyaninov k (mean 1.40 vs. 1.61), and more negative SPEI-12 values (–0.48 vs. 0.07) compared to non-outbreak years (p < 0.05). One-year lag analysis indicated drought as both a predisposing and triggering factor. These findings highlight the interaction of habitat suitability and drought as a key driver of spruce decline, supporting adaptive management strategies that retain spruce in optimal habitats while converting suboptimal stands to more drought-tolerant species. Full article
(This article belongs to the Section Land Use, Impact Assessment and Sustainability)
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15 pages, 2694 KB  
Article
Subterranean Biodiversity on the Brink: Urgent Framework for Conserving the Densest Cave Region in South America
by Robson de Almeida Zampaulo, Marconi Souza-Silva and Rodrigo Lopes Ferreira
Animals 2025, 15(19), 2899; https://doi.org/10.3390/ani15192899 - 3 Oct 2025
Viewed by 295
Abstract
Subterranean ecosystems represent some of the most unique and fragile habitats on Earth, yet they remain poorly understood and highly vulnerable to human-induced disturbances. Despite their ecological significance, these systems are rarely integrated into conservation planning, and surface-level protected areas alone are insufficient [...] Read more.
Subterranean ecosystems represent some of the most unique and fragile habitats on Earth, yet they remain poorly understood and highly vulnerable to human-induced disturbances. Despite their ecological significance, these systems are rarely integrated into conservation planning, and surface-level protected areas alone are insufficient to safeguard their biodiversity. In southeastern Brazil, a karst landscape spanning approximately 1200 km2, recognized as the region with the highest cave density in South America (approximately 2600 caves), is under increasing pressure from urban expansion, agriculture, and mining, all of which threaten the ecological integrity of subterranean habitats. This study sought to identify caves of high conservation priority by integrating species richness of non-troglobitic invertebrates, occurrence of troglobitic species, presence of endemic troglobitic taxa, and the degree of anthropogenic impacts, using spatial algebra and polygon-based mapping approaches. Agriculture and exotic forestry plantations (54%) and mining operations (15%) were identified as the most prevalent disturbances. A total of 32 troglobitic species were recorded, occurring in 63% of the 105 surveyed caves. Notably, seven caves alone harbor 25% of the region’s known cave invertebrate diversity and encompass 50% of its cave-restricted species. The findings highlight the global significance of this spot of subterranean biodiversity and reinforce the urgent need for targeted conservation measures. Without immediate action to mitigate unsustainable land use and resource exploitation, the persistence of these highly specialized communities is at imminent risk. Full article
(This article belongs to the Section Ecology and Conservation)
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26 pages, 12966 KB  
Article
Dynamic Co-Optimization of Features and Hyperparameters in Object-Oriented Ensemble Methods for Wetland Mapping Using Sentinel-1/2 Data
by Yue Ma, Yongchao Ma, Qiang Zheng and Qiuyue Chen
Water 2025, 17(19), 2877; https://doi.org/10.3390/w17192877 - 2 Oct 2025
Viewed by 326
Abstract
Wetland mapping plays a crucial role in monitoring wetland ecosystems, water resource management, and habitat suitability assessment. Wetland classification remains significantly challenging due to the diverse types, intricate spatial patterns, and highly dynamic nature. This study proposed a dynamic hybrid method that integrated [...] Read more.
Wetland mapping plays a crucial role in monitoring wetland ecosystems, water resource management, and habitat suitability assessment. Wetland classification remains significantly challenging due to the diverse types, intricate spatial patterns, and highly dynamic nature. This study proposed a dynamic hybrid method that integrated feature selection and object-oriented ensemble model construction to improve wetland mapping using Sentinel-1 and Sentinel-2 data. The proposed feature selection approach integrates the ReliefF and recursive feature elimination (RFE) algorithms with a feature evaluation criterion based on Shapley additive explanations (SHAP) values, aiming to optimize the feature set composed of various variables. During the construction of ensemble models (i.e., RF, XGBoost, and LightGBM) with features selected by RFE, hyperparameter tuning is subsequently conducted using Bayesian optimization (BO), ensuring that the selected optimal features and hyperparameters significantly enhance the accuracy and performance of the classifiers. The accuracy assessment demonstrates that the BO-LightGBM model with ReliefF-RFE-SHAP-selected features achieves superior performance to the RF and XGBoost models, achieving the highest overall accuracy of 89.4% and a kappa coefficient of 0.875. The object-oriented classification maps accurately depict the spatial distribution patterns of different wetland types. Furthermore, SHAP values offer global and local interpretations of the model to better understand the contribution of various features to wetland classification. The proposed dynamic hybrid method offers an effective tool for wetland mapping and contributes to wetland environmental monitoring and management. Full article
(This article belongs to the Special Issue Remote Sensing of Spatial-Temporal Variation in Surface Water)
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21 pages, 11783 KB  
Article
Spatio-Temporal Pattern Analysis of African Swine Fever Spreading in Northwestern Italy—The Role of Habitat Interfaces
by Samuele De Petris, Tommaso Orusa, Annalisa Viani, Francesco Feliziani, Marco Sordilli, Sabatino Troisi, Simona Zoppi, Marco Ragionieri, Riccardo Orusa and Enrico Borgogno-Mondino
Animals 2025, 15(19), 2886; https://doi.org/10.3390/ani15192886 - 2 Oct 2025
Viewed by 544
Abstract
African swine fever (ASF) is a highly contagious viral disease with significant impacts on domestic pigs and wild boar populations. This study applies GIS-based spatial analysis to monitor ASF outbreaks in northwestern Italy (Piedmont and Liguria) and identify areas at increased risk. Key [...] Read more.
African swine fever (ASF) is a highly contagious viral disease with significant impacts on domestic pigs and wild boar populations. This study applies GIS-based spatial analysis to monitor ASF outbreaks in northwestern Italy (Piedmont and Liguria) and identify areas at increased risk. Key factors considered include pig density, wildlife proximity, and environmental conditions. The spatial analysis revealed that central–western municipalities exhibited higher risk due to favorable environmental conditions and dense wild boar populations, while peripheral areas showed a temporal delay in outbreak emergence. Mapping the spreading rate and habitat interfaces allowed the development of a spatial risk model, which was further analyzed using geostatistical techniques to understand disease dynamics. The results demonstrate the effectiveness of geospatial modeling in identifying high-risk zones, characterizing spatio-temporal patterns, and supporting targeted prevention and surveillance strategies. These findings provide actionable insights for ASF management and resource allocation. Future studies may refine these models by integrating additional datasets and environmental variables, enhancing predictive capacity and applicability across different regions. Full article
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33 pages, 20327 KB  
Article
Automated Detection of Beaver-Influenced Floodplain Inundations in Multi-Temporal Aerial Imagery Using Deep Learning Algorithms
by Evan Zocco, Chandi Witharana, Isaac M. Ortega and William Ouimet
ISPRS Int. J. Geo-Inf. 2025, 14(10), 383; https://doi.org/10.3390/ijgi14100383 - 30 Sep 2025
Viewed by 181
Abstract
Remote sensing provides a viable alternative for understanding landscape modifications attributed to beaver activity. The central objective of this study is to integrate multi-source remote sensing observations in tandem with a deep learning (DL) (convolutional neural net or transformer) model to automatically map [...] Read more.
Remote sensing provides a viable alternative for understanding landscape modifications attributed to beaver activity. The central objective of this study is to integrate multi-source remote sensing observations in tandem with a deep learning (DL) (convolutional neural net or transformer) model to automatically map beaver-influenced floodplain inundations (BIFI) over large geographical extents. We trained, validated, and tested eleven different model configurations in three architectures using five ResNet and five B-Finetuned encoders. The training dataset consisted of >25,000 manually annotated aerial image tiles of BIFIs in Connecticut. The YOLOv8 architecture outperformed competing configurations and achieved an F1 score of 80.59% and pixel-based map accuracy of 98.95%. SegFormer and U-Net++’s highest-performing models had F1 scores of 68.98% and 78.86%, respectively. The YOLOv8l-seg model was deployed at a statewide scale based on 1 m resolution multi-temporal aerial imagery acquired from 1990 to 2019 under leaf-on and leaf-off conditions. Our results suggest a variety of inferences when comparing leaf-on and leaf-off conditions of the same year. The model exhibits limitations in identifying BIFIs in panchromatic imagery in occluded environments. Study findings demonstrate the potential of harnessing historical and modern aerial image datasets with state-of-the-art DL models to increase our understanding of beaver activity across space and time. Full article
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18 pages, 5175 KB  
Article
Integrating Habitat Prediction and Risk Assessment to Prioritize Conservation Areas for the Long-Tailed Goral (Naemorhedus caudatus)
by Soyeon Park, Minkyung Kim and Sangdon Lee
Animals 2025, 15(19), 2848; https://doi.org/10.3390/ani15192848 - 29 Sep 2025
Viewed by 315
Abstract
Human activities have accelerated the extinction of species, driving biodiversity loss and ecosystem degradation. Establishing protected areas (PAs) that encompass habitats of endangered species is essential for achieving biodiversity conservation and ecosystem protection goals. This study aimed to identify and prioritize critical conservation [...] Read more.
Human activities have accelerated the extinction of species, driving biodiversity loss and ecosystem degradation. Establishing protected areas (PAs) that encompass habitats of endangered species is essential for achieving biodiversity conservation and ecosystem protection goals. This study aimed to identify and prioritize critical conservation areas for the endangered long-tailed goral (Naemorhedus caudatus) in five regions of Gangwon and Gyeongbuk Provinces, South Korea. The MaxEnt model was applied to predict the potential habitat of the species, considering key environmental factors such as topographic, distance-related, vegetation, and land cover variables. The InVEST Habitat Risk Assessment (HRA) model was used to quantitatively assess cumulative risks within the habitat from the impacts of forest development and anthropogenic pressures. Subsequently, the Zonation software was employed for spatial prioritization by integrating the outputs of the models, and core conservation areas (CCAs) with high ecological value were identified through overlap analysis with 1st-grade areas from the Ecological and Nature Map (ENM). Results indicated that suitable habitats for the long-tailed goral were mainly located in forested regions, and areas subjected to multiple stressors faced elevated habitat risk. High-priority areas (HPAs) were primarily forested zones with high habitat suitability. The overlap analysis emphasized the need to implement conservation measures targeting CCAs while also managing additional HPAs outside CCAs, which are not designated as ENM. This study provides a methodological framework and baseline data to support systematic conservation planning for the long-tailed goral, offering practical guidance for future research and policy development. Full article
(This article belongs to the Section Mammals)
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18 pages, 8627 KB  
Article
Habitat Suitability and Relative Abundance of the European Wildcat (Felis silvestris) in the Southeastern Part of Its Range
by Despina Migli, Christos Astaras, Nikolaos Kiamos, Stefanos Kyriakidis, Yorgos Mertzanis, George Boutsis, Nikolaos Oikonomakis, Yiannis Tsaknakis and Dionisios Youlatos
Animals 2025, 15(19), 2816; https://doi.org/10.3390/ani15192816 - 26 Sep 2025
Viewed by 230
Abstract
The European wildcat exhibits considerable plasticity in its habitat requirements across its distribution, with differences increasing along a continental-scale latitudinal gradient. While wildcats often favor deciduous and mixed forests with dense cover and prey, studies show these preferences vary across their expansion. Range-wide [...] Read more.
The European wildcat exhibits considerable plasticity in its habitat requirements across its distribution, with differences increasing along a continental-scale latitudinal gradient. While wildcats often favor deciduous and mixed forests with dense cover and prey, studies show these preferences vary across their expansion. Range-wide conservation efforts will benefit from incorporating knowledge generated by robust regional ecological models. We used data from a large camera trap grid (n = 292 stations), spanning across eight wildcat-associated habitats, within its range in northern Greece, to understand the regional ecological parameters affecting the species’ habitat selection. We analyzed the data using single-season density-induced detection heterogeneity occupancy models (Royle–Nichols), considering 12 environmental and anthropogenic parameters. The global model’s GoF was high (p = 0.9). Elevation and percent forest cover were both significantly negatively related to wildcat occupancy (as derived from the modeled “relative abundance index” N). Likewise, there was a negative, but moderate, relation between distance to freshwater bodies and human settlements with wildcat occupancy. We used the model-average coefficients to generate a predictive map of wildcat relative abundance across northern Greece, which identified 47,930 km2 of potential wildcat habitat. Assuming a range of densities between 0.05 and 0.3 ind/km2 in areas with predicted low, medium, and high relative abundance, we speculate the putative wildcat population in northern Greece to be between 3535 and 7070 individuals. The findings, which vary from ecological models of the species in northern Europe, show the need for regional models and the importance of Greece, and the Balkan peninsula, for the species. Full article
(This article belongs to the Section Ecology and Conservation)
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36 pages, 35564 KB  
Article
Enhancing Soundscape Characterization and Pattern Analysis Using Low-Dimensional Deep Embeddings on a Large-Scale Dataset
by Daniel Alexis Nieto Mora, Leonardo Duque-Muñoz and Juan David Martínez Vargas
Mach. Learn. Knowl. Extr. 2025, 7(4), 109; https://doi.org/10.3390/make7040109 - 24 Sep 2025
Viewed by 433
Abstract
Soundscape monitoring has become an increasingly important tool for studying ecological processes and supporting habitat conservation. While many recent advances focus on identifying species through supervised learning, there is growing interest in understanding the soundscape as a whole while considering patterns that extend [...] Read more.
Soundscape monitoring has become an increasingly important tool for studying ecological processes and supporting habitat conservation. While many recent advances focus on identifying species through supervised learning, there is growing interest in understanding the soundscape as a whole while considering patterns that extend beyond individual vocalizations. This broader view requires unsupervised approaches capable of capturing meaningful structures related to temporal dynamics, frequency content, spatial distribution, and ecological variability. In this study, we present a fully unsupervised framework for analyzing large-scale soundscape data using deep learning. We applied a convolutional autoencoder (Soundscape-Net) to extract acoustic representations from over 60,000 recordings collected across a grid-based sampling design in the Rey Zamuro Reserve in Colombia. These features were initially compared with other audio characterization methods, showing superior performance in multiclass classification, with accuracies of 0.85 for habitat cover identification and 0.89 for time-of-day classification across 13 days. For the unsupervised study, optimized dimensionality reduction methods (Uniform Manifold Approximation and Projection and Pairwise Controlled Manifold Approximation and Projection) were applied to project the learned features, achieving trustworthiness scores above 0.96. Subsequently, clustering was performed using KMeans and Density-Based Spatial Clustering of Applications with Noise (DBSCAN), with evaluations based on metrics such as the silhouette, where scores above 0.45 were obtained, thus supporting the robustness of the discovered latent acoustic structures. To interpret and validate the resulting clusters, we combined multiple strategies: spatial mapping through interpolation, analysis of acoustic index variance to understand the cluster structure, and graph-based connectivity analysis to identify ecological relationships between the recording sites. Our results demonstrate that this approach can uncover both local and broad-scale patterns in the soundscape, providing a flexible and interpretable pathway for unsupervised ecological monitoring. Full article
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